Gene

KWMTBOMO04413  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005395

Annotation

PREDICTED:_loquacious_isoform_X5_[Bombyx_mori]

Location

Bomo_Chr8(-):6361945-6367183      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.675

CDS

ATGGAAGGGAATACGGTCCACCCGCATCCATCTGTGGTACCGGGTTTACCACCCGGTGTTATCCATGGAATGACAGTGCACGGCAGTGGACCGAACGGTGAACACATTCCTCACGGTCCAAGACGCCGCTATCAGACCCGACCCAAACCTAATAACTTGCAAAGATTGCCTTTGGACGAGGCGGCCAAGAGGGAAATGGAATCACTTCCTACAAAGACTCCTGTCTCTGTTTTGCAAGAGCTGTTGGCACGTCGTGGAACTGTTCCTAAATATGAACTAGTCCAGATAGAAGGCATGATACATGAACCCACTTTCCGGTACAGAGTAACTGTGGCTGATTTAGTTGCAATGGGCACTGGTCGCTCAAAAAAAGAGGCAAAGCACTCTGCAGCCAAGGCTTTACTGGACAAGTTAACTGGTGCTACACCAGCTGATCAGACTACCAATGGCAATGTTCCTGAAACTGGTGCTGTAGTACCTACATTTGAAGATAAACTAATGGGTAATCCTGTTGGATGGCTTCAGGAGTTGTGTATGTCACGATTCTGGCCACCACCATCTTACCATGCTGAAAACGATGACAATGTTAATAGACGTTTGCCCCATGAACGTCAATTTACGATCATTTGCACATTGCTCAAGCGCCGTGAAGTTGGTACAGGCAAGTCAAAGAAATTAGCTAAACGGCAAGCTGCCTACAAGATGTGGCAGGCCTTACAGGACAACCCACCAGAATCCTTCCAGAATGATGATGAGGGCGGTGTTGCGGCCCGTTATGCCGATTTGAAAGATAGTAAAATCTCCACATTGACCACGAGCCATAGCCATAAAGTGTCGCAGTTCCACAAACATCTCAAACAGTCTGTTGGCCCCAACCTGGCCAAGTTGCAGGTGACACCACTAAACAATAAGGATTTTAACTTCGTTCAGTTCTTGCAAGAAATAGCATCAGAGCAATCTTTTGAGGTGACCTATGTCGACATAGAAGAAAAGTCTATGACTGGTCTATGTCAGTGTCTTGTCCAGCTTTCCACATTGCCAGTAGCTGTATGCCACGGAGCCGGCCTCACCAGCAAGGATGCCCAGTCATCTGCTGCTCAGAACGCCTTGGAGTATCTCAAGATTATGACCAAAAAGTGA

Protein

MEGNTVHPHPSVVPGLPPGVIHGMTVHGSGPNGEHIPHGPRRRYQTRPKPNNLQRLPLDEAAKREMESLPTKTPVSVLQELLARRGTVPKYELVQIEGMIHEPTFRYRVTVADLVAMGTGRSKKEAKHSAAKALLDKLTGATPADQTTNGNVPETGAVVPTFEDKLMGNPVGWLQELCMSRFWPPPSYHAENDDNVNRRLPHERQFTIICTLLKRREVGTGKSKKLAKRQAAYKMWQALQDNPPESFQNDDEGGVAARYADLKDSKISTLTTSHSHKVSQFHKHLKQSVGPNLAKLQVTPLNNKDFNFVQFLQEIASEQSFEVTYVDIEEKSMTGLCQCLVQLSTLPVAVCHGAGLTSKDAQSSAAQNALEYLKIMTKK

Uniprot

H9J7A3   A0A2H1W2A7   A0A2P1DM84   A0A2A4J626   A0A2A4J754   A0A0K0K6V6   + More
A0A2P1DM92   V9VKN9   D7UT12   A0A194Q2P6   A0A212EHY9   S4P8M2   A0A1E1W369   A0A2P1DM68   A0A1E1WCV2   A0A0L7LLD4   A0A194RCD3   A0A0C9QIA9   A0A2J7PGL5   A0A1Y1LH45   A0A026X4P0   D6X0T5   E2AR52   E2B2Z2   A0A3L8D986   K7J0W7   A0A1B6I3C8   F4W8R2   A0A067QMI2   A0A088A7A0   A0A2A3ED79   A0A1B6EHY9   A0A151IK93   A0A151WT23   A0A2P1DM90   A0A158NKG1   A0A154PMD9   A0A232FF22   A0A0L7QNN6   A0A1B6CST5   A0A1B6BYY4   A0A1B6DEH2   M4QN86   A0A2P1DM80   U4U8Z6   A0A1B6KCU0   A0A023F662   U5EUP9   A0A182GZ79   A0A0D3QFR6   A0A0N0BBH2   T1H861   A0A023EQG9   A0A1S4FKA5   A0A0N7Z949   A0A0A9Z792   E0W0M6   A0A1L8DVE7   A0A1L8DVH6   A0A0A9Z4Z9   A0A182MJ00   A0A240SY95   A0A1B0CE97   A0A0V0GEI7   A0A1J1IVW3   A0A1L8DVG6   A0A224XS41   A0A084WG83   A0A069DSG5   A0A1Y1LJA9   K7Y7N2   B0WCK8   A0A182NBU0   N6SXE7   A0A182WGL7   T1J8G5   A0A0C9RE50   A0A1Q3F487   A0A182IZ74   A0A1Q3F446   A0A182QLC9   A0A182P4B9   A0A182XG93   A0A182VL93   A0A182KTY8   A0A182HRU6   A0A2J7PGL4   A0A1B6K619   A0A182UIX0   A0A1S4H2U1   A0A182SZU0   Q7PM57   A0A182JQ45   A0A067ZUY0   A0A0L0BLY5   W8C8Q0   A0A1I8PK51   A0A2P1DM51   W5JAU0  

Pubmed

19121390    26354079    22118469    23622113    26227816    28004739    + More
24508170    18362917    19820115    20798317    30249741    20075255    21719571    24845553    21347285    28648823    23537049    25474469    26483478    24945155    27129103    25401762    26823975    20566863    24438588    26334808    23232437    20966253    12364791    26108605    24495485    20920257    23761445   

EMBL

BABH01013596    ODYU01005767    SOQ46962.1    MG225435    AVK59446.1    NWSH01002755    + More
PCG67567.1    PCG67566.1    JX481278    AGS40931.1    MG225434    AVK59445.1    KF717087    AHC98012.1    AB566387    BAJ11656.1    KQ459589    KPI97680.1    AGBW02014758    OWR41099.1    GAIX01004134    JAA88426.1    GDQN01009650    GDQN01008374    JAT81404.1    JAT82680.1    MG225436    AVK59447.1    GDQN01006240    JAT84814.1    JTDY01000707    KOB76149.1    KQ460397    KPJ15262.1    GBYB01003259    JAG73026.1    NEVH01025177    PNF15475.1    GEZM01055718    GEZM01055716    JAV72972.1    KK107021    EZA62384.1    KQ971372    EFA09556.1    GL441871    EFN64091.1    GL445250    EFN89961.1    QOIP01000011    RLU16673.1    GECU01026311    JAS81395.1    GL887908    EGI69553.1    KK853163    KDR10415.1    KZ288279    PBC29687.1    GECZ01032230    JAS37539.1    KQ977294    KYN03945.1    KQ982762    KYQ51062.1    MG225420    AVK59431.1    ADTU01018820    ADTU01018821    KQ434978    KZC13022.1    NNAY01000332    OXU29153.1    KQ414851    KOC60179.1    GEDC01020810    JAS16488.1    GEDC01031103    JAS06195.1    GEDC01013207    JAS24091.1    KC316042    AGH30331.1    MG225451    AVK59462.1    KB632100    ERL88818.1    GEBQ01030720    JAT09257.1    GBBI01002013    JAC16699.1    GANO01002221    JAB57650.1    JXUM01098982    KQ564461    KXJ72239.1    KJ598055    AJF11546.1    KQ436033    KOX67534.1    ACPB03010167    GAPW01001761    JAC11837.1    GDKW01001539    JAI55056.1    GBHO01003265    GBRD01007410    GDHC01010710    JAG40339.1    JAG58411.1    JAQ07919.1    DS235861    EEB19182.1    GFDF01003685    JAV10399.1    GFDF01003657    JAV10427.1    GBHO01003262    GBRD01007411    JAG40342.1    JAG58410.1    AXCM01002017    AJVK01000995    AJVK01000996    AJVK01000997    AJVK01000998    AJWK01008688    AJWK01008689    AJWK01008690    AJWK01008691    AJWK01008692    GECL01000375    JAP05749.1    CVRI01000058    CRL02681.1    GFDF01003656    JAV10428.1    GFTR01005605    JAW10821.1    ATLV01023462    KE525343    KFB49227.1    GBGD01002044    JAC86845.1    GEZM01055719    GEZM01055717    JAV72971.1    JX679520    AFX89033.1    DS231888    EDS43579.1    APGK01052997    KB741218    ENN72449.1    JH431954    GBYB01006630    JAG76397.1    GFDL01012698    JAV22347.1    GFDL01012777    JAV22268.1    AXCN02000690    APCN01001747    PNF15476.1    GECU01000795    JAT06912.1    AAAB01008980    EAA14308.5    KF192312    AHY18682.1    JRES01001667    KNC21066.1    GAMC01002839    JAC03717.1    MG225421    AVK59432.1    ADMH02001647    ETN61572.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000037510    UP000053240    + More
UP000235965    UP000053097    UP000007266    UP000000311    UP000008237    UP000279307    UP000002358    UP000007755    UP000027135    UP000005203    UP000242457    UP000078542    UP000075809    UP000005205    UP000076502    UP000215335    UP000053825    UP000030742    UP000069940    UP000249989    UP000053105    UP000015103    UP000009046    UP000075883    UP000092462    UP000092461    UP000183832    UP000030765    UP000002320    UP000075884    UP000019118    UP000075920    UP000075880    UP000075886    UP000075885    UP000076407    UP000075903    UP000075882    UP000075840    UP000075902    UP000075901    UP000007062    UP000075881    UP000037069    UP000095300    UP000000673   

PRIDE

H9J7A3    D7UT12   

Pfam

PF00035   dsrm        + More
PF16482   Staufen_C
PF02889   Sec63

Interpro

IPR014720   dsRBD_dom        + More
IPR032478   Staufen_C       
IPR004179   Sec63-dom       

CDD

cd00048  DSRM

ProteinModelPortal

H9J7A3   A0A2H1W2A7   A0A2P1DM84   A0A2A4J626   A0A2A4J754   A0A0K0K6V6   + More
A0A2P1DM92   V9VKN9   D7UT12   A0A194Q2P6   A0A212EHY9   S4P8M2   A0A1E1W369   A0A2P1DM68   A0A1E1WCV2   A0A0L7LLD4   A0A194RCD3   A0A0C9QIA9   A0A2J7PGL5   A0A1Y1LH45   A0A026X4P0   D6X0T5   E2AR52   E2B2Z2   A0A3L8D986   K7J0W7   A0A1B6I3C8   F4W8R2   A0A067QMI2   A0A088A7A0   A0A2A3ED79   A0A1B6EHY9   A0A151IK93   A0A151WT23   A0A2P1DM90   A0A158NKG1   A0A154PMD9   A0A232FF22   A0A0L7QNN6   A0A1B6CST5   A0A1B6BYY4   A0A1B6DEH2   M4QN86   A0A2P1DM80   U4U8Z6   A0A1B6KCU0   A0A023F662   U5EUP9   A0A182GZ79   A0A0D3QFR6   A0A0N0BBH2   T1H861   A0A023EQG9   A0A1S4FKA5   A0A0N7Z949   A0A0A9Z792   E0W0M6   A0A1L8DVE7   A0A1L8DVH6   A0A0A9Z4Z9   A0A182MJ00   A0A240SY95   A0A1B0CE97   A0A0V0GEI7   A0A1J1IVW3   A0A1L8DVG6   A0A224XS41   A0A084WG83   A0A069DSG5   A0A1Y1LJA9   K7Y7N2   B0WCK8   A0A182NBU0   N6SXE7   A0A182WGL7   T1J8G5   A0A0C9RE50   A0A1Q3F487   A0A182IZ74   A0A1Q3F446   A0A182QLC9   A0A182P4B9   A0A182XG93   A0A182VL93   A0A182KTY8   A0A182HRU6   A0A2J7PGL4   A0A1B6K619   A0A182UIX0   A0A1S4H2U1   A0A182SZU0   Q7PM57   A0A182JQ45   A0A067ZUY0   A0A0L0BLY5   W8C8Q0   A0A1I8PK51   A0A2P1DM51   W5JAU0  

PDB

5ZAM     E-value=3.35694e-33,     Score=354

KEGG

100499495    K18420 RISC-loading complex subunit TARBP2 | (RefSeq) Loqs; loquacious

GO

GO:0030422   GO:0008047   GO:0003725   GO:0016301   GO:0004386   GO:0003723   GO:0035197   GO:0070883   GO:0070578   GO:0090065   GO:0046782   GO:1903798  

Length:

379

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01579

Exp number, first 60 AAs:

0.00558

Total prob of N-in:

0.01119

outside

1  -  379

 

 

Pi

282.345114

Theta

179.893932

Tajima's D

0.42513

CLR

15.970057

CSRT

0.499675016249188

Interpretation

Uncertain