Gene

KWMTBOMO04409

Pre Gene Modal

BGIBMGA005402

Annotation

PREDICTED:_probable_ATP-dependent_DNA_helicase_HFM1_[Amyelois_transitella]

Location

Bomo_Chr8(+):6328664-6330322      View in EpiBrowser

Full name

Probable ATP-dependent DNA helicase HFM1      

Location in the cell

PlasmaMembrane   Reliability : 1.979

CDS

ATGTTTCCGCACTTGCAGTCTCTAATCATTAGCGGCGTTGGCTGTCACCACGCTGGGCTCCTATTCGAAGAGAGAATGTACATTGAGAGCGCGTTCAGAAACAGAGATCTACCAATACTTATTACCACCACCACGCTCGCTATGGGCGTAAATTTACCAGCTCATTTAGTGATCATCAAGAATACACAGCAATACGTTAACGGAGCTTATCAGGAATACAGTATAAGTACGGTATTGCAAATGGTCGGTCGAGCTGGACGACCGCAATTCGACACCGAAGCTACCGCCGTCATAATGACGAGACTTGCCGATAAGGTGAGTCCTGATATTAATTAG

Protein

MFPHLQSLIISGVGCHHAGLLFEERMYIESAFRNRDLPILITTTTLAMGVNLPAHLVIIKNTQQYVNGAYQEYSISTVLQMVGRAGRPQFDTEATAVIMTRLADKVSPDIN

Description

Required for crossover formation and complete synapsis of homologous chromosomes during meiosis.

Catalytic Activity

ATP + H2O = ADP + H(+) + phosphate

Similarity

Belongs to the helicase family. SKI2 subfamily.

Keywords

ATP-binding   Complete proteome   Helicase   Hydrolase   Meiosis   Nucleotide-binding   Reference proteome  

Feature

chain  Probable ATP-dependent DNA helicase HFM1

Uniprot

H9J7B0   A0A2H1W4Q4   A0A2A4IWG5   A0A194PWH8   A0A212EHY6   A0A3S2NV24   + More
W4XYW1   A0A2R7VNT0   G3WP41   W4XIW2   K7EBL3   A0A383ZMP0   A0A094LLJ3   A0A0Q3Q1S2   A0A3Q0GH13   A0A3Q0GDK2   G1KUQ1   H0VA28   M3XZQ8   H3CNC9   F7ARR8   A0A286ZUN5   F1LWY1   F1S4E9   G5ASI6   A0A287BMJ1   A0A093HRD6   A0A151M532   A0A091MH88   A0A151M534   A0A091KPU4   A0A383ZNB6   A0A1L8GMZ3   A0A2U3ZHX7   F6WRW2   A0A340Y4G3   A0A384C3M7   A0A2U3ZHX9   G1L0V4   A0A2I0MDY0   G3PSW6   A0A2I0UMQ7   A0A3Q7QJB0   A0A2U3ZHY8   A0A3Q7VWX0   A0A1S3HGY3   A0A2Y9SAA3   E2R5U9   D2HUC3   A0A1V4JYQ1   E2RA34   A0A091QWS2   A0A2Y9LHR9   A0A1V4JYN5   A0A1V4JYQ2   A0A1V4K0C3   A0A2Y9ITI2   A0A3Q7S1S8   A0A341BCJ9   G3I0Y7   A0A3L7H9E0   A0A2Y9LPT0   A0A091XSM1   A0A2Y9LJZ4   A0A2U4A133   A0A091HRT4   A0A091FKX5   A0A091TN48   A0A2Y9LHG4   A0A091QL31   A0A1S2ZUG5   A0A091CP49   A0A1U7UKT7   W5MC30   A0A2U3XBS1   A0A3Q0D1F8   A2RUV5   A0A091NMI4   A0A2Y9H2I8   A0A2U3XBP4   F1MFR1   A0A093IT05   A0A091T3U2   A0A2U9BJU0   A0A3Q1IZJ9   H0Z6Z6   A0A3Q1JBL2   A0A091MBM7   A0A0A0AJ85   A0A087QHI4   A0A3L8SPX5   H0XZQ2   U3JGG5   A0A091L989   A0A2Y9RCB7   A0A3Q1J4S4   A0A093QF48   A0A3P8T6N5   A0A2D0SW76   A0A2D0SVQ9  

EC Number

3.6.4.12

Pubmed

19121390    26354079    22118469    21709235    18464734    21993624    + More
15496914    17495919    15057822    21993625    22293439    27762356    19892987    20010809    23371554    16341006    21804562    29704459    19393038    20360741    30282656   

EMBL

BABH01013596    ODYU01006288    SOQ48003.1    NWSH01005710    PCG64019.1    KQ459589    + More
KPI97677.1    AGBW02014758    OWR41095.1    RSAL01000063    RVE49498.1    AAGJ04028426    KK854008    PTY09197.1    AEFK01152901    AEFK01152902    AEFK01152903    AEFK01152904    KL359789    KFZ64664.1    LMAW01002002    KQK82116.1    AAKN02004044    AAKN02004045    AAKN02004046    AAKN02004047    AEYP01031963    AEYP01031964    AEMK02000025    AABR07014161    JH166735    EHA99996.1    KL206716    KFV85228.1    AKHW03006584    KYO19627.1    KK828177    KFP74399.1    KYO19626.1    KK537306    KFP29804.1    CM004472    OCT85181.1    ACTA01066455    ACTA01074455    ACTA01082455    ACTA01090455    ACTA01098455    ACTA01106455    ACTA01114455    ACTA01122455    AKCR02000018    PKK27866.1    KZ505681    PKU47327.1    AAEX03004823    GL193394    EFB13360.1    LSYS01005497    OPJ77339.1    KK707602    KFQ31339.1    OPJ77340.1    OPJ77338.1    OPJ77337.1    JH001037    EGW07141.1    RAZU01000247    RLQ62559.1    KK735808    KFR15916.1    KL217788    KFO98646.1    KL447073    KFO69596.1    KK479827    KFQ60141.1    KK800274    KFQ28265.1    KN125242    KFO18955.1    AHAT01018350    BC133060    BC121498    KL387128    KFP90307.1    KK566757    KFW04798.1    KK437011    KFQ69021.1    CP026249    AWP04338.1    ABQF01035428    ABQF01035429    ABQF01035430    KK528167    KFP68886.1    KL871737    KGL93095.1    KL225597    KFM00688.1    QUSF01000010    RLW05663.1    AAQR03023018    AAQR03023019    AAQR03023020    AAQR03023021    AAQR03023022    AAQR03023023    AGTO01001511    KL307548    KFP52432.1    KL416641    KFW82722.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000283053    UP000007110    + More
UP000007648    UP000002279    UP000261681    UP000051836    UP000189705    UP000001646    UP000005447    UP000000715    UP000007303    UP000002280    UP000008227    UP000002494    UP000006813    UP000053584    UP000050525    UP000186698    UP000245340    UP000002281    UP000265300    UP000261680    UP000008912    UP000053872    UP000007635    UP000286641    UP000286642    UP000085678    UP000002254    UP000190648    UP000248483    UP000248482    UP000286640    UP000252040    UP000001075    UP000273346    UP000053605    UP000245320    UP000054308    UP000053760    UP000079721    UP000028990    UP000189704    UP000018468    UP000245341    UP000189706    UP000008143    UP000248481    UP000009136    UP000246464    UP000265040    UP000007754    UP000053858    UP000053286    UP000276834    UP000005225    UP000016665    UP000248480    UP000265080    UP000221080   

PRIDE

F1LWY1    F1S4E9    G3I0Y7    A2RUV5   

Pfam

PF00271   Helicase_C        + More
PF00270   DEAD
PF02889   Sec63
PF00069   Pkinase

Interpro

IPR027417   P-loop_NTPase        + More
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR004179   Sec63-dom       
IPR036390   WH_DNA-bd_sf       
IPR011009   Kinase-like_dom_sf       
IPR008271   Ser/Thr_kinase_AS       
IPR017441   Protein_kinase_ATP_BS       
IPR000719   Prot_kinase_dom       

SUPFAM

SSF52540   SSF52540        + More
SSF46785   SSF46785       
SSF56112   SSF56112       

CDD

cd00079  HELICc

ProteinModelPortal

H9J7B0   A0A2H1W4Q4   A0A2A4IWG5   A0A194PWH8   A0A212EHY6   A0A3S2NV24   + More
W4XYW1   A0A2R7VNT0   G3WP41   W4XIW2   K7EBL3   A0A383ZMP0   A0A094LLJ3   A0A0Q3Q1S2   A0A3Q0GH13   A0A3Q0GDK2   G1KUQ1   H0VA28   M3XZQ8   H3CNC9   F7ARR8   A0A286ZUN5   F1LWY1   F1S4E9   G5ASI6   A0A287BMJ1   A0A093HRD6   A0A151M532   A0A091MH88   A0A151M534   A0A091KPU4   A0A383ZNB6   A0A1L8GMZ3   A0A2U3ZHX7   F6WRW2   A0A340Y4G3   A0A384C3M7   A0A2U3ZHX9   G1L0V4   A0A2I0MDY0   G3PSW6   A0A2I0UMQ7   A0A3Q7QJB0   A0A2U3ZHY8   A0A3Q7VWX0   A0A1S3HGY3   A0A2Y9SAA3   E2R5U9   D2HUC3   A0A1V4JYQ1   E2RA34   A0A091QWS2   A0A2Y9LHR9   A0A1V4JYN5   A0A1V4JYQ2   A0A1V4K0C3   A0A2Y9ITI2   A0A3Q7S1S8   A0A341BCJ9   G3I0Y7   A0A3L7H9E0   A0A2Y9LPT0   A0A091XSM1   A0A2Y9LJZ4   A0A2U4A133   A0A091HRT4   A0A091FKX5   A0A091TN48   A0A2Y9LHG4   A0A091QL31   A0A1S2ZUG5   A0A091CP49   A0A1U7UKT7   W5MC30   A0A2U3XBS1   A0A3Q0D1F8   A2RUV5   A0A091NMI4   A0A2Y9H2I8   A0A2U3XBP4   F1MFR1   A0A093IT05   A0A091T3U2   A0A2U9BJU0   A0A3Q1IZJ9   H0Z6Z6   A0A3Q1JBL2   A0A091MBM7   A0A0A0AJ85   A0A087QHI4   A0A3L8SPX5   H0XZQ2   U3JGG5   A0A091L989   A0A2Y9RCB7   A0A3Q1J4S4   A0A093QF48   A0A3P8T6N5   A0A2D0SW76   A0A2D0SVQ9  

PDB

5ZWO     E-value=6.59077e-21,     Score=241

KEGG

101742032    K15271 ATP-dependent DNA helicase HFM1/MER3 [EC:3.6.4.12] | (RefSeq) probable ATP-dependent DNA heli

GO

GO:0003676   GO:0005524   GO:0004386   GO:0000712   GO:0006401   GO:0004004   GO:0051321   GO:0004672  

Length:

111

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

16.02414

Exp number, first 60 AAs:

16.00001

Total prob of N-in:

0.11873

POSSIBLE N-term signal

sequence

outside

1  -  111

 

 

Pi

460.110845

Theta

197.15765

Tajima's D

3.535916

CLR

0.950525

CSRT

0.994750262486876

Interpretation

Uncertain