Gene

KWMTBOMO04399

Pre Gene Modal

BGIBMGA005238

Annotation

PREDICTED:_F-box/LRR-repeat_protein_4_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr8(-):5869863-5884241      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.039 Nuclear   Reliability : 1.098

CDS

ATGCAGAGTGCGTCTGATGTAATATCATCGTTGTTTTGGCTTAAAGACAATAGTGATATTGAAGAAGACCCAGAACAACAAATTGTAGAGCAATTTGTGCAAAATGTTGAAGACTTTAGCTCTCAGTACGGAAGTGAAATCAGTGTTTCATATACAGCTTTCAACCTCCGGGGTCCACCATCCAATTTTCCTGACTACGGAGATTACCCTCAAGCCTTCGTTATGAGGACTTATGGCACCTGGTGGGATGAAGCTCCATCAGCACAAGAAGACTACATGCCACAGAATGCAAGCACTATAACAAGTCAAGACTTTGTAGAAGTATCTTTCGAGAGGGCGGTTTACCCCCTAGAGGTGTCTGTCTTCGAAACGTATAACCCCGGAGCGTTGGTCAGGATATGGGCTCGTGGTCCCACATCTTGGATGCTGCTATGGGAAGGAGAACCAGAGTATGTAGGCGACAGGCCGAGGATATTCAGCCCTCCAATACGACAATTGAATGTTCCAACAAGGATATTAAGATTGGAGTTCAACCACAAACTACTGCCATACTATACGGAATTAGACGCAGTGCTACTTAAAGGCTTACAGCCCCCGAATTTTGTCAAAATGAAGAATAATTTCGCATACCCGAGTCTGTTCTATCCGAAAACTCAGGCTGCCGTTGAAAAGGGTCAACTTCTCAACAAAATCATCGCGTCGAATCTCCACGAAAGCGTTGCCTCGCGAATGAATATGCAACGCATACAAGCGAAACCAGACACGGGACCGCCGCTTGGAGATTTTCAACGATTACCGGTAAGTTATTACGTATTACGTTACCGGTCACCGTCCTCGCCGAACCCGTAG

Protein

MQSASDVISSLFWLKDNSDIEEDPEQQIVEQFVQNVEDFSSQYGSEISVSYTAFNLRGPPSNFPDYGDYPQAFVMRTYGTWWDEAPSAQEDYMPQNASTITSQDFVEVSFERAVYPLEVSVFETYNPGALVRIWARGPTSWMLLWEGEPEYVGDRPRIFSPPIRQLNVPTRILRLEFNHKLLPYYTELDAVLLKGLQPPNFVKMKNNFAYPSLFYPKTQAAVEKGQLLNKIIASNLHESVASRMNMQRIQAKPDTGPPLGDFQRLPVSYYVLRYRSPSSPNP

Uniprot

H9J6U6   A0A3S2NXR1   A0A2H1WIV2   A0A212EWL5   A0A194Q1T5   A0A0N1IH23   + More
A0A0L7LQC6   A0A1B6FB31   A0A1B6GSY4   A0A1B6KMC1   A0A2J7PBN4   A0A2J7PBM0   A0A2J7PBM5   A0A067RL02   A0A1I8PUZ4   W8C5U3   A0A3L7I682   V9GWU9   A0A3Q0CIL9   A0A139WCZ7   G1PTY3  

Pubmed

19121390    22118469    26354079    26227816    24845553    24495485    + More
29704459    12040188    19468303    21183079    24129315    28071753    18362917    19820115    21993624   

EMBL

BABH01028507    BABH01028508    BABH01028509    BABH01028510    BABH01028511    BABH01028512    + More
BABH01028513    RSAL01000030    RVE51684.1    ODYU01008966    SOQ53003.1    AGBW02011946    OWR45876.1    KQ459580    KPI99288.1    KQ459761    KPJ20138.1    JTDY01000342    KOB77619.1    GECZ01022293    JAS47476.1    GECZ01004219    JAS65550.1    GEBQ01027397    JAT12580.1    NEVH01027081    PNF13732.1    PNF13730.1    PNF13733.1    KK852452    KDR23668.1    GAMC01001508    GAMC01001507    JAC05049.1    RAZU01000102    RLQ72762.1    AL683854    AL772230    CH466538    EDL05541.1    KQ971361    KYB25810.1    AAPE02031026    AAPE02031027   

Proteomes

UP000005204    UP000283053    UP000007151    UP000053268    UP000053240    UP000037510    + More
UP000235965    UP000027135    UP000095300    UP000273346    UP000000589    UP000189706    UP000007266    UP000001074   

PRIDE

H9J6U6   

Pfam

PF12937   F-box-like        + More
PF13516   LRR_6
PF00646   F-box
PF00160   Pro_isomerase

Interpro

IPR001810   F-box_dom        + More
IPR032675   LRR_dom_sf       
IPR036047   F-box-like_dom_sf       
IPR006553   Leu-rich_rpt_Cys-con_subtyp       
IPR001611   Leu-rich_rpt       
IPR029000   Cyclophilin-like_dom_sf       
IPR002130   Cyclophilin-type_PPIase_dom       

SUPFAM

SSF81383   SSF81383        + More
SSF50891   SSF50891       

Gene 3D

3.80.10.10     2.40.100.10    

ProteinModelPortal

H9J6U6   A0A3S2NXR1   A0A2H1WIV2   A0A212EWL5   A0A194Q1T5   A0A0N1IH23   + More
A0A0L7LQC6   A0A1B6FB31   A0A1B6GSY4   A0A1B6KMC1   A0A2J7PBN4   A0A2J7PBM0   A0A2J7PBM5   A0A067RL02   A0A1I8PUZ4   W8C5U3   A0A3L7I682   V9GWU9   A0A3Q0CIL9   A0A139WCZ7   G1PTY3  

KEGG

101736612    K10270 F-box and leucine-rich repeat protein 4 | (RefSeq) F-box/LRR-repeat protein 4

GO

GO:0042026   GO:0016018   GO:0003755   GO:0051082   GO:0005758   GO:0016607  

Length:

282

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0015

Exp number, first 60 AAs:

0

Total prob of N-in:

0.02992

outside

1  -  282

 

 

Pi

217.444835

Theta

172.464092

Tajima's D

1.271666

CLR

0.011086

CSRT

0.729013549322534

Interpretation

Uncertain