Gene

KWMTBOMO04398

Pre Gene Modal

BGIBMGA005238

Annotation

PREDICTED:_F-box/LRR-repeat_protein_4_isoform_X2_[Bombyx_mori]

Location

Bomo_Chr8(-):5851376-5863211      View in EpiBrowser

Location in the cell

Extracellular   Reliability : 1.883

CDS

ATGTATTTTAATTCATTTCAGGACGAAACAATACTATCGGTAATGAAGTTCTTAGATATGCAATCTCTTTGTAGATGCGCACAAGTCAACAGACATTTCAACAGATTGGCCTACGACTCTATACTATATCGGAGCATCGATCTGAGGCCATATTGGCATTGTGTGCAATCGCAGGTTTTGGTGACGCTGTCCTTGAGATGCAAGTTTCTGCAGAAATTAGACCTCTCGTGGTGCGGGAGTCATCGCATGATATATTCACATTACGTTGTCAATTTCCTAAAAGAGAGCGGCACAGAATTAACGCACTTAAGAATGAACTGTTGTAAATTCGTGGACAACGCCGTGCTTCGAACGATTGTTGACATAGCGCCGTTCTTACAAGAGCTATGCCTACGTTCAGTAGTCGGCTGCACCGATTGGATCTGTTTGGCGTCTTTGAGGAACTTACGACGCTTAGACTTATACAGAACCGACATCAACACGGCGGCAGCTGTCAACATCATTAGGTTCAATCCCGGCTTGGAGCACCTTAACGTCGGTTCGTGCAAGATGATATCGGCCATGGACGAAGTGGCCATAGCTTTGGGAGCGAATTGCCCGAACCTGATATCGGTCGACTTCTGGAAATCCTACTCTTTGACTCCAAACGGAATAAGGGCCTTGGGAAATTGTAAGAAACTACAGGAACTGGATGTCGGATGGTGTCTACAGGCCGGCGGCTCGGGCGAATGGCTGGCGTGGCTCGCCGGCACAGAGCTACGTAAGTTGTTCCTCGGCGCGTTGCGCGGTGTCTGCGATAGAGATTTGCGTTCGTTGCTGCCACGAGCGCCGAAGCTGACGCAGCTCGACCTGCTCGGCGTCAGGGCGGTCACGTCGGACGTGTGCGATTCAATATTAGCAGAGTGTCGCGAGTTAAGGCTTCTGGACGTTAGCTTCTGCGATCAGATTCAAGAGTCTCAGGTATTAGAATGGCGAGAACAATATCCTCACGTCAATATAAAAAGGTCCTTTCAGTCGGCCAACTTGAATACCGATCCTAATCCTTTATTTTTAGCGCCTAGCTTAGAATAA

Protein

MYFNSFQDETILSVMKFLDMQSLCRCAQVNRHFNRLAYDSILYRSIDLRPYWHCVQSQVLVTLSLRCKFLQKLDLSWCGSHRMIYSHYVVNFLKESGTELTHLRMNCCKFVDNAVLRTIVDIAPFLQELCLRSVVGCTDWICLASLRNLRRLDLYRTDINTAAAVNIIRFNPGLEHLNVGSCKMISAMDEVAIALGANCPNLISVDFWKSYSLTPNGIRALGNCKKLQELDVGWCLQAGGSGEWLAWLAGTELRKLFLGALRGVCDRDLRSLLPRAPKLTQLDLLGVRAVTSDVCDSILAECRELRLLDVSFCDQIQESQVLEWREQYPHVNIKRSFQSANLNTDPNPLFLAPSLE

Uniprot

A0A3S2NXR1   H9J6U6   A0A212FJQ6   A0A194Q1T5   A0A0N1IH23   A0A2H1WIF1   + More
A0A1E1W9H0   A0A1B6LFS7   A0A2P8Y557   A0A1B6DHT4   A0A1B6KMC1   A0A1B6JFS5   A0A023F0F6   A0A1B6GSY4   A0A067RL02   A0A1S3DRU7   A0A2J7PBM0   A0A146M2F1   A0A0A9Z1R1   A0A2J7PBM5   A0A0C9R4F9   E2C0C4   A0A088AK83   A0A154PGS9   A0A2A3ECK3   K7J1T4   A0A232F8Z2   A0A310SPB6   A0A2J7PBN4   E0VK57   A0A026WYR6   A0A0M8ZZM7   A0A151J5A4   E2ARZ3   A0A2P8XC30   A0A2S2NQR3   A0A151XAI0   A0A158NH63   A0A195B7W1   A0A195FG79   A0A1B0D3K2   J9K0S0   A0A336LTK7   A0A1B0CEB9   A0A151I8N4   A0A182GA70   Q16NM0   A0A0P6IV65   A0A1S4FUQ1   V4AZM6   Q16GM5   A0A2S2Q7R8   C3ZQG1   A0A1S3IKW0   A0A1W4XBL9   B0WPD9   T1ITN6   A0A210PSH5   A0A1I8PUZ4   A0A0K8VCB2   B4HD82   A0A1I8NAV7   A0A0N8ECW9   T1PB53   A0A3B0K5X0   A0A1J1IBV8   Q29GN3   A0A1A9WCH9   B4GVC3   A0A0K8V7A1   E9IJP6   B4ND39   A0A0P5QN84   A0A0P5RWG8   A0A0P5HPE2   A0A0P5L7Z7   A0A1B0B2C8   A0A0P5NXW1   A0A0A1XQV5   A0A0P5NPB5   A0A1B0AHV0   A0A0P5P1D5   B4Q2R7   A0A0P4YUZ7   W8CDR1   A0A034WHA2   B4JJ09   A0A0P5TWG5   A0A0P6D2Q3   A0A0P5M1I5   A0A0P5Y8G5   A0A0N8ATL5   A0A0P5GCH8   A0A1W4VVX0   A0A0N8A6U3   A0A0P5ZHG1  

Pubmed

19121390    22118469    26354079    29403074    25474469    24845553    + More
26823975    25401762    20798317    20075255    28648823    20566863    24508170    30249741    21347285    26483478    17510324    26999592    23254933    18563158    28812685    17994087    25315136    15632085    21282665    25830018    17550304    24495485    25348373   

EMBL

RSAL01000030    RVE51684.1    BABH01028507    BABH01028508    BABH01028509    BABH01028510    + More
BABH01028511    BABH01028512    BABH01028513    AGBW02008240    OWR53973.1    KQ459580    KPI99288.1    KQ459761    KPJ20138.1    ODYU01008873    SOQ52845.1    GDQN01007543    JAT83511.1    GEBQ01017563    JAT22414.1    PYGN01000914    PSN39389.1    GEDC01012052    JAS25246.1    GEBQ01027397    JAT12580.1    GECU01009606    JAS98100.1    GBBI01003777    JAC14935.1    GECZ01004219    JAS65550.1    KK852452    KDR23668.1    NEVH01027081    PNF13730.1    GDHC01005859    JAQ12770.1    GBHO01004417    JAG39187.1    PNF13733.1    GBYB01011184    GBYB01015276    JAG80951.1    JAG85043.1    GL451770    EFN78583.1    KQ434889    KZC10380.1    KZ288285    PBC29458.1    NNAY01000698    OXU26929.1    KQ760551    OAD59843.1    PNF13732.1    DS235239    EEB13763.1    KK107063    QOIP01000005    EZA61152.1    RLU22874.1    KQ435811    KOX72873.1    KQ980017    KYN18214.1    GL442209    EFN63767.1    PYGN01003399    PSN29548.1    GGMR01006934    MBY19553.1    KQ982339    KYQ57373.1    ADTU01015139    KQ976574    KYM80332.1    KQ981625    KYN39029.1    AJVK01002926    AJVK01002927    ABLF02031566    UFQT01000115    SSX20291.1    AJWK01008723    KQ978346    KYM94755.1    JXUM01155771    KQ572294    KXJ68049.1    CH477816    EAT35965.1    GDUN01000310    JAN95609.1    KB200084    ESP03193.1    CH478258    EAT33396.1    GGMS01004458    MBY73661.1    GG666661    EEN45217.1    DS232022    EDS32314.1    JH431493    NEDP02005525    OWF39443.1    GDHF01015796    GDHF01009946    GDHF01001783    JAI36518.1    JAI42368.1    JAI50531.1    CH479781    EDW38630.1    GDIQ01039116    JAN55621.1    KA645924    AFP60553.1    OUUW01000015    SPP88683.1    CVRI01000044    CRK96470.1    CH379064    EAL32076.2    CH479192    EDW26410.1    GDHF01017522    JAI34792.1    GL763877    EFZ19217.1    CH964239    EDW82748.2    GDIQ01111927    JAL39799.1    GDIQ01095680    JAL56046.1    GDIQ01230338    JAK21387.1    GDIQ01198645    JAK53080.1    JXJN01007607    GDIQ01143225    JAL08501.1    GBXI01000891    JAD13401.1    GDIQ01161278    JAK90447.1    GDIQ01141525    JAL10201.1    CM000162    EDX01661.1    GDIP01222372    JAJ01030.1    GAMC01001506    JAC05050.1    GAKP01005819    JAC53133.1    CH916370    EDW00550.1    GDIP01123134    JAL80580.1    GDIQ01083654    JAN11083.1    GDIQ01165472    JAK86253.1    GDIP01063004    JAM40711.1    GDIQ01244139    JAK07586.1    GDIQ01242993    JAK08732.1    GDIP01176793    JAJ46609.1    GDIP01114248    GDIP01043660    JAM60055.1   

Proteomes

UP000283053    UP000005204    UP000007151    UP000053268    UP000053240    UP000245037    + More
UP000027135    UP000079169    UP000235965    UP000008237    UP000005203    UP000076502    UP000242457    UP000002358    UP000215335    UP000009046    UP000053097    UP000279307    UP000053105    UP000078492    UP000000311    UP000075809    UP000005205    UP000078540    UP000078541    UP000092462    UP000007819    UP000092461    UP000078542    UP000069940    UP000249989    UP000008820    UP000030746    UP000001554    UP000085678    UP000192223    UP000002320    UP000242188    UP000095300    UP000008744    UP000095301    UP000268350    UP000183832    UP000001819    UP000091820    UP000007798    UP000092460    UP000092445    UP000002282    UP000001070    UP000192221   

PRIDE

H9J6U6   

Pfam

PF12937   F-box-like        + More
PF13516   LRR_6
PF00646   F-box
PF00560   LRR_1

Interpro

IPR001810   F-box_dom        + More
IPR036047   F-box-like_dom_sf       
IPR032675   LRR_dom_sf       
IPR006553   Leu-rich_rpt_Cys-con_subtyp       
IPR001611   Leu-rich_rpt       

SUPFAM

SSF81383   SSF81383       

Gene 3D

3.80.10.10    

ProteinModelPortal

A0A3S2NXR1   H9J6U6   A0A212FJQ6   A0A194Q1T5   A0A0N1IH23   A0A2H1WIF1   + More
A0A1E1W9H0   A0A1B6LFS7   A0A2P8Y557   A0A1B6DHT4   A0A1B6KMC1   A0A1B6JFS5   A0A023F0F6   A0A1B6GSY4   A0A067RL02   A0A1S3DRU7   A0A2J7PBM0   A0A146M2F1   A0A0A9Z1R1   A0A2J7PBM5   A0A0C9R4F9   E2C0C4   A0A088AK83   A0A154PGS9   A0A2A3ECK3   K7J1T4   A0A232F8Z2   A0A310SPB6   A0A2J7PBN4   E0VK57   A0A026WYR6   A0A0M8ZZM7   A0A151J5A4   E2ARZ3   A0A2P8XC30   A0A2S2NQR3   A0A151XAI0   A0A158NH63   A0A195B7W1   A0A195FG79   A0A1B0D3K2   J9K0S0   A0A336LTK7   A0A1B0CEB9   A0A151I8N4   A0A182GA70   Q16NM0   A0A0P6IV65   A0A1S4FUQ1   V4AZM6   Q16GM5   A0A2S2Q7R8   C3ZQG1   A0A1S3IKW0   A0A1W4XBL9   B0WPD9   T1ITN6   A0A210PSH5   A0A1I8PUZ4   A0A0K8VCB2   B4HD82   A0A1I8NAV7   A0A0N8ECW9   T1PB53   A0A3B0K5X0   A0A1J1IBV8   Q29GN3   A0A1A9WCH9   B4GVC3   A0A0K8V7A1   E9IJP6   B4ND39   A0A0P5QN84   A0A0P5RWG8   A0A0P5HPE2   A0A0P5L7Z7   A0A1B0B2C8   A0A0P5NXW1   A0A0A1XQV5   A0A0P5NPB5   A0A1B0AHV0   A0A0P5P1D5   B4Q2R7   A0A0P4YUZ7   W8CDR1   A0A034WHA2   B4JJ09   A0A0P5TWG5   A0A0P6D2Q3   A0A0P5M1I5   A0A0P5Y8G5   A0A0N8ATL5   A0A0P5GCH8   A0A1W4VVX0   A0A0N8A6U3   A0A0P5ZHG1  

PDB

5JH5     E-value=0.000340284,     Score=104

KEGG

101736612    K10270 F-box and leucine-rich repeat protein 4 | (RefSeq) F-box/LRR-repeat protein 4

GO

GO:0031146   GO:0006511   GO:0019005   GO:0016567   GO:0016021   GO:0000209   GO:0043025   GO:0042321   GO:0016059   GO:0032229   GO:0043005   GO:0005515   GO:0005975   GO:0043169   GO:0016311   GO:0016791   GO:0006470   GO:0004674   GO:0009058   GO:0016742   GO:0003824  

Length:

356

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00809999999999999

Exp number, first 60 AAs:

0.00064

Total prob of N-in:

0.01134

outside

1  -  356

 

 

Pi

319.816205

Theta

186.230328

Tajima's D

0.849595

CLR

1.075735

CSRT

0.621018949052547

Interpretation

Uncertain