Gene

KWMTBOMO04381

Annotation

PREDICTED:_leucine-rich_repeat-containing_protein_1-like_[Bombyx_mori]

Location

Bomo_Chr8(-):5144705-5147797      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.438

CDS

ATGAGTTACAATCAAGAAATATTACCTAGTGCAGTGCTCCATTGGAATTATAGAGGCTTCACCGAATTTCCAATCCAAAAAATTCAAGGTGAAGAATCTACAATCACAGATATATATTTAAAAGAAAATTTAATAGCAAACATACCAAAAGACATTTATCTGTTTGAGAACCTGGAAAGCTTATATCTGAGCGGGAATGATATCACAGAGCTGCCTAAAGAGATATCTAGACTGCGCTGTTTGAAGTGTCTCGATGTTAGCGGAAACAGATTGAAGAGGATTCCAGACGAGATTGGAGATGCTAGAAATTTGAAATTTCTAATATTCGACGAGAACGAATTGTGCGAAATCCCGCTTCGGCTGTCGGAACTGAGATACCTCCGGTATTTATCGATAACCAACTGCAATGGCTCCCGCAGAAACCAGTTTACAACTACCATCACTGCGAATTTAGATTTTGGCGGAACAGCAATTTGA

Protein

MSYNQEILPSAVLHWNYRGFTEFPIQKIQGEESTITDIYLKENLIANIPKDIYLFENLESLYLSGNDITELPKEISRLRCLKCLDVSGNRLKRIPDEIGDARNLKFLIFDENELCEIPLRLSELRYLRYLSITNCNGSRRNQFTTTITANLDFGGTAI

Uniprot

A0A2H1V6I8   A0A2A4J616   A0A0L7LES9   A0A2A4J7L9   A0A3S2NI72   A0A0C9RIJ8   + More
A0A1D2N904   A0A0J7NY89   E9I446   A0A154NY81   A0A0M8ZUR3   A0A026X2B9   E2AS04   A0A1B6F6H9   A0A3L8DS69   A0A1B6I6K9   K7JUE9   A0A1B6GKT2   A0A232EZA4   E2BUQ8   E9IJN6   A0A088AQ98   A0A2A3EI36   A0A0P4XB83   A0A162N9A9   A0A0P5I5H4   A0A151XDK8   Q171E3   A0A182G3L2   F4WSS1   A0A195D169   A0A158NH03   A0A195B6G3   A0A151J178   M6G7G9   A0A195FNC7   B0WEL3   A0A0K8WGM8   A0A2R7VRL5   N1U3H2   A0A367QQZ0   A0A1Y3MY09   A0A350IL38  

Pubmed

26227816    27289101    21292972    24508170    20798317    30249741    + More
20075255    28648823    21282665    17510324    26483478    21719571    21347285    30148503   

EMBL

ODYU01000938    SOQ36453.1    NWSH01002801    PCG67515.1    JTDY01001514    KOB73681.1    + More
PCG67514.1    RSAL01000030    RVE51696.1    GBYB01008070    JAG77837.1    LJIJ01000150    ODN01466.1    LBMM01000855    KMQ97370.1    GL734904    EFX61235.1    KQ434782    KZC04577.1    KQ435840    KOX71367.1    KK107020    EZA62437.1    GL442209    EFN63778.1    GECZ01023985    JAS45784.1    QOIP01000004    RLU23251.1    GECU01025144    JAS82562.1    GECZ01006713    JAS63056.1    NNAY01001524    OXU23695.1    GL450743    EFN80563.1    GL763877    EFZ19210.1    KZ288232    PBC31453.1    GDIP01243710    JAI79691.1    LRGB01000568    KZS17793.1    GDIQ01257675    GDIQ01217756    JAK33969.1    KQ982294    KYQ58338.1    CH477458    EAT40610.1    JXUM01141674    KQ569286    KXJ68680.1    GL888327    EGI62728.1    KQ976973    KYN06648.1    ADTU01015422    KQ976574    KYM80108.1    KQ980555    KYN15564.1    AFLW02000174    EMM80705.1    KQ981387    KYN41983.1    DS231910    EDS45729.1    GDHF01002082    JAI50232.1    KK854018    PTY09471.1    AHMI02000298    EMY12439.1    LWTK01000030    RCJ25694.1    KZ151033    OUM60479.1    DMZX01000151    HAW08505.1   

Proteomes

UP000218220    UP000037510    UP000283053    UP000094527    UP000036403    UP000000305    + More
UP000076502    UP000053105    UP000053097    UP000000311    UP000279307    UP000002358    UP000215335    UP000008237    UP000005203    UP000242457    UP000076858    UP000075809    UP000008820    UP000069940    UP000249989    UP000007755    UP000078542    UP000005205    UP000078540    UP000078492    UP000012128    UP000078541    UP000002320    UP000012249    UP000252906    UP000195826   

Pfam

PF13855   LRR_8        + More
PF12799   LRR_4
PF00560   LRR_1
PF16095   COR
PF13676   TIR_2

Interpro

IPR032675   LRR_dom_sf        + More
IPR003591   Leu-rich_rpt_typical-subtyp       
IPR001611   Leu-rich_rpt       
IPR025875   Leu-rich_rpt_4       
IPR000157   TIR_dom       
IPR032171   COR       
IPR035897   Toll_tir_struct_dom_sf       
IPR027417   P-loop_NTPase       
IPR020859   ROC_dom       

SUPFAM

SSF52540   SSF52540        + More
SSF52200   SSF52200       

Gene 3D

3.80.10.10     3.40.50.10140    

ProteinModelPortal

A0A2H1V6I8   A0A2A4J616   A0A0L7LES9   A0A2A4J7L9   A0A3S2NI72   A0A0C9RIJ8   + More
A0A1D2N904   A0A0J7NY89   E9I446   A0A154NY81   A0A0M8ZUR3   A0A026X2B9   E2AS04   A0A1B6F6H9   A0A3L8DS69   A0A1B6I6K9   K7JUE9   A0A1B6GKT2   A0A232EZA4   E2BUQ8   E9IJN6   A0A088AQ98   A0A2A3EI36   A0A0P4XB83   A0A162N9A9   A0A0P5I5H4   A0A151XDK8   Q171E3   A0A182G3L2   F4WSS1   A0A195D169   A0A158NH03   A0A195B6G3   A0A151J178   M6G7G9   A0A195FNC7   B0WEL3   A0A0K8WGM8   A0A2R7VRL5   N1U3H2   A0A367QQZ0   A0A1Y3MY09   A0A350IL38  

PDB

4B8C     E-value=5.01393e-11,     Score=157

KEGG

101738653    no KO assigned | (RefSeq) leucine-rich repeat-containing protein 1-like

GO

GO:0007165   GO:0005515   GO:0015074   GO:0016311   GO:0016791   GO:0006470   GO:0004674   GO:0009058   GO:0016742   GO:0003824  

Length:

158

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00018

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.07815

outside

1  -  158

 

 

Pi

153.399853

Theta

193.119627

Tajima's D

-1.454531

CLR

0.443631

CSRT

0.0652967351632418

Interpretation

Uncertain