Gene

KWMTBOMO04379

Pre Gene Modal

BGIBMGA005274

Annotation

dynactin_4_protein_[Bombyx_mori]

Location

Bomo_Chr8(+):5105828-5108757      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.577 Nuclear   Reliability : 1.126

CDS

ATGGAACTCCAAGACACTTATTACAATAAATCGGAATATGTAGAAACTGCCTCCGGTAATAAAGTAAGCCGACAAACAGTGCTCTGTGGCTCTCAGAATATTGTTTTACACGGTAAAGTGATCGTACAAAGTGATGCCATCATAAGAGGAGATTTGGCTAATGTTAAAACAGGTAGATTTTGTATAATCAGCAAAGGCTCCGTGATACGACCTCCTTTTAAAAAATTCAGCAAAGGAGTCGCATTTTTTCCCTTGCAAATGGGTGATCATGTTTTTGTTGGGGAGAACACTGTTGTGAATGCAGCTGTTGTAGGCTCATACGTTTACATTGGAAAGAATGTTGTTATTGGAAGGAGATGTGTGCTCAAAGACTGCTGCATGATTGAAGACAACTCAGTTCTACCTGCAGAGACTATTGTCCCTTCTTTTGCAAGGTATTCAGGAAGCCCAGCACACCTGATCACTACATTACCAGAAGCAATGCCCGATCTGATGACAGAGTTTACAAAGAGTTATTATCAGCACTTCTTACCAACTACAGCTTAA

Protein

MELQDTYYNKSEYVETASGNKVSRQTVLCGSQNIVLHGKVIVQSDAIIRGDLANVKTGRFCIISKGSVIRPPFKKFSKGVAFFPLQMGDHVFVGENTVVNAAVVGSYVYIGKNVVIGRRCVLKDCCMIEDNSVLPAETIVPSFARYSGSPAHLITTLPEAMPDLMTEFTKSYYQHFLPTTA

Uniprot

Q2F6B2   A0A1V0M898   A0A291P167   A0A088M991   A0A2H1WF86   A0A2A4J766   + More
A0A291P106   A0A3S2NXR9   S4PBG1   A0A194R5V5   A0A212FIF3   A0A194Q169   A0A087ZWI1   A0A2J7QBF9   A0A2P8YJT2   A0A067R511   A0A0M9AAG7   A0A1B6IZ24   A0A1Y1KDR4   A0A1B6FQA5   A0A1B6M267   A0A0A9ZEC3   E2B853   E2AM40   F4W6I3   A0A195D4C6   A0A195E4C2   A0A151I085   A0A158P291   A0A1B6DP10   A0A0V0GCB9   T1I590   E1ZVK6   A0A2R7WQM4   A0A026WEG6   E9IHE4   K7J112   A0A023F4J1   A0A069DWN8   V5GFG8   A0A232FMK2   A0A224XM17   A0A0L7QVM8   A0A151X252   D2A120   N6TU52   E9FWG0   A0A0P4XTI3   A0A0P5X5J7   A0A0P6JII8   A0A2B4SU52   A0A3M6TQ73   A0A1B0FYB4   A0A3R7P7Z0   Q1HQR3   Q171Q6   A0A0K2TF55   A0A1Q3G1T6   A0A023EHE9   A0A182JJ27   A0A1B0CE98   A0A224YW89   A0A131YIK6   R7USF7   A0A131XLD1   A7SE03   A0A023FMP9   A0A0P4X1J0   A0A182G494   A0A0P4VVS7   T1J1I0   A0A023G6J6   A0A023FU29   A0A087W1A6   A0A1L8E5G2   A0A1L8E5A7   A0A1D2MR53   A0A084WD93   A0A087UMD3   U6JDZ9   A0A0P5YSQ4   A0A0R3T8W0   A0A369SFQ7   B3RPR6   A0A182W7D6   A0A1I8JKY7   W5J4S5   D1FQ47   A0A0K8R8N7   A0A068XNY4   E0VCY5   A0A182Q431   A0A0R3SFR5   T1E7Q9   A0A2M3ZAW6   A0A2M4AVH6   A0A2M4C0P1   A0A182F183   A0A1S3KHN6   A0A182JU56  

Pubmed

19121390    28349297    28986331    26385554    23622113    26354079    + More
22118469    29403074    24845553    28004739    25401762    26823975    20798317    21719571    21347285    24508170    30249741    21282665    20075255    25474469    26334808    28648823    18362917    19820115    23537049    21292972    30382153    17204158    17510324    24945155    28797301    26830274    23254933    28049606    17615350    26483478    27129103    23485966    27289101    24438588    24013640    30042472    18719581    26392545    20920257    23761445    20566863   

EMBL

BABH01028438    DQ311160    ABD36105.1    KU755504    ARD71214.1    MF706188    + More
ATJ44615.1    KJ579216    AIN34692.1    ODYU01008286    SOQ51739.1    NWSH01002801    PCG67508.1    MF687657    ATJ44583.1    RSAL01000030    RVE51699.1    GAIX01005927    JAA86633.1    KQ460685    KPJ12894.1    AGBW02008397    OWR53500.1    KQ459580    KPI99301.1    NEVH01016298    PNF25921.1    PYGN01000545    PSN44505.1    KK852965    KDR13144.1    KQ435713    KOX79273.1    GECU01015521    JAS92185.1    GEZM01091328    GEZM01091326    JAV56907.1    GECZ01017438    JAS52331.1    GEBQ01009938    JAT30039.1    GBHO01015518    GBHO01003464    GBRD01003434    GDHC01010650    GDHC01009434    GDHC01000947    JAG28086.1    JAG40140.1    JAG62387.1    JAQ07979.1    JAQ09195.1    JAQ17682.1    GL446282    EFN88145.1    GL440704    EFN65498.1    GL887707    EGI70318.1    KQ976885    KYN07284.1    KQ979657    KYN19931.1    KQ976632    KYM78898.1    ADTU01007028    GEDC01009897    JAS27401.1    GECL01001085    JAP05039.1    ACPB03005271    GL434548    EFN74775.1    KK855296    PTY21873.1    KK107250    QOIP01000002    EZA54333.1    RLU25524.1    GL763245    EFZ20002.1    GBBI01002575    JAC16137.1    GBGD01003145    JAC85744.1    GALX01005747    JAB62719.1    NNAY01000014    OXU31971.1    GFTR01002900    JAW13526.1    KQ414727    KOC62576.1    KQ982580    KYQ54487.1    KQ971338    EFA02593.1    APGK01054376    APGK01054377    KB741249    ENN71921.1    GL732526    EFX88439.1    GDIP01247063    JAI76338.1    GDIP01077317    LRGB01001361    JAM26398.1    KZS12456.1    GDIQ01006947    JAN87790.1    LSMT01000028    PFX32017.1    RCHS01003183    RMX43575.1    AJVK01001002    QCYY01003442    ROT63429.1    DQ440381    ABF18414.1    CH477448    EAT40725.1    HACA01007109    CDW24470.1    GFDL01001271    JAV33774.1    GAPW01004790    JAC08808.1    AJWK01008694    GFPF01007417    MAA18563.1    GEDV01010189    JAP78368.1    AMQN01006538    KB298595    ELU09048.1    GEFH01000277    JAP68304.1    DS469633    EDO38104.1    GBBK01001470    JAC23012.1    GDRN01028567    JAI67615.1    JXUM01143320    KQ569575    KXJ68586.1    GDKW01002849    JAI53746.1    JH431785    GBBM01005532    JAC29886.1    GBBK01000254    JAC24228.1    LN902844    CDI98286.1    GFDF01000200    JAV13884.1    GFDF01000201    JAV13883.1    LJIJ01000678    ODM95402.1    ATLV01022956    KE525338    KFB48187.1    KK120552    KFM78522.1    LK028580    APAU02000015    CDS19944.1    EUB62059.1    GDIP01053926    JAM49789.1    UZAE01002068    VDN99356.1    NOWV01000017    RDD45304.1    DS985242    EDV28231.1    NIVC01000882    NIVC01000808    NIVC01000158    PAA75464.1    PAA76607.1    PAA89218.1    ADMH02002110    ETN58936.1    EZ419947    ACZ28302.1    GADI01006303    JAA67505.1    DS235068    EEB11241.1    AXCN02000795    UYSG01001192    VDL37779.1    GAMD01002832    JAA98758.1    GGFM01004890    MBW25641.1    GGFK01011297    MBW44618.1    GGFJ01009721    MBW58862.1   

Proteomes

UP000005204    UP000218220    UP000283053    UP000053240    UP000007151    UP000053268    + More
UP000005203    UP000235965    UP000245037    UP000027135    UP000053105    UP000008237    UP000000311    UP000007755    UP000078542    UP000078492    UP000078540    UP000005205    UP000015103    UP000053097    UP000279307    UP000002358    UP000215335    UP000053825    UP000075809    UP000007266    UP000019118    UP000000305    UP000076858    UP000225706    UP000275408    UP000092462    UP000283509    UP000008820    UP000075880    UP000092461    UP000014760    UP000001593    UP000069940    UP000249989    UP000017246    UP000094527    UP000030765    UP000054359    UP000019149    UP000046398    UP000278807    UP000253843    UP000009022    UP000075920    UP000095280    UP000215902    UP000000673    UP000009046    UP000075886    UP000046397    UP000274504    UP000069272    UP000085678    UP000075881   

PRIDE

Q2F6B2   

Pfam

PF00132   Hexapep        + More
PF13423   UCH_1
PF14602   Hexapep_2

Interpro

IPR011004   Trimer_LpxA-like_sf        + More
IPR001451   Hexapep       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR028889   USP_dom       
IPR028881   PAN2_dom       
IPR038765   Papain-like_cys_pep_sf       
IPR036322   WD40_repeat_dom_sf       

SUPFAM

SSF51161   SSF51161        + More
SSF50978   SSF50978       
SSF54001   SSF54001       

Gene 3D

2.130.10.10    

ProteinModelPortal

Q2F6B2   A0A1V0M898   A0A291P167   A0A088M991   A0A2H1WF86   A0A2A4J766   + More
A0A291P106   A0A3S2NXR9   S4PBG1   A0A194R5V5   A0A212FIF3   A0A194Q169   A0A087ZWI1   A0A2J7QBF9   A0A2P8YJT2   A0A067R511   A0A0M9AAG7   A0A1B6IZ24   A0A1Y1KDR4   A0A1B6FQA5   A0A1B6M267   A0A0A9ZEC3   E2B853   E2AM40   F4W6I3   A0A195D4C6   A0A195E4C2   A0A151I085   A0A158P291   A0A1B6DP10   A0A0V0GCB9   T1I590   E1ZVK6   A0A2R7WQM4   A0A026WEG6   E9IHE4   K7J112   A0A023F4J1   A0A069DWN8   V5GFG8   A0A232FMK2   A0A224XM17   A0A0L7QVM8   A0A151X252   D2A120   N6TU52   E9FWG0   A0A0P4XTI3   A0A0P5X5J7   A0A0P6JII8   A0A2B4SU52   A0A3M6TQ73   A0A1B0FYB4   A0A3R7P7Z0   Q1HQR3   Q171Q6   A0A0K2TF55   A0A1Q3G1T6   A0A023EHE9   A0A182JJ27   A0A1B0CE98   A0A224YW89   A0A131YIK6   R7USF7   A0A131XLD1   A7SE03   A0A023FMP9   A0A0P4X1J0   A0A182G494   A0A0P4VVS7   T1J1I0   A0A023G6J6   A0A023FU29   A0A087W1A6   A0A1L8E5G2   A0A1L8E5A7   A0A1D2MR53   A0A084WD93   A0A087UMD3   U6JDZ9   A0A0P5YSQ4   A0A0R3T8W0   A0A369SFQ7   B3RPR6   A0A182W7D6   A0A1I8JKY7   W5J4S5   D1FQ47   A0A0K8R8N7   A0A068XNY4   E0VCY5   A0A182Q431   A0A0R3SFR5   T1E7Q9   A0A2M3ZAW6   A0A2M4AVH6   A0A2M4C0P1   A0A182F183   A0A1S3KHN6   A0A182JU56  

PDB

5NW4     E-value=2.68959e-71,     Score=678

KEGG

692805    K10427 dynactin 5 | (RefSeq) dynactin 4 protein

GO

GO:0016740  

Length:

181

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

3.65483

Exp number, first 60 AAs:

0.00811

Total prob of N-in:

0.24842

outside

1  -  181

 

 

Pi

168.86324

Theta

178.48085

Tajima's D

-0.289516

CLR

0.62277

CSRT

0.291785410729464

Interpretation

Uncertain