Silkworm Genome Informatics Database

Gene

KWMTBOMO04375

Annotation

PREDICTED:_uncharacterized_protein_LOC106129229_[Amyelois_transitella]

Location

Bomo_Chr8(-):5040978-5053017 View in EpiBrowser

Location in the cell

PlasmaMembrane Reliability : 4.106

CDS

ATGATTGTAAGAGAAATGGATCTAAATTCCTCGATATACGTGGTGCACAGAGGGAAAGTTGTGATTAGCCAGGGAGGTAAAAAGATAACGACATTAACTAAAGGATGTATCTTCGGGCAGCTCACTGACGATGTTTCCCGTCCGATAAAAATTTCAGCATCGGCTGAAAGTCACGCTGACTTGCTTCAAATATCAAACAAACAATTCCAGGATTTTATTACTGATGAGGTGCGGGATACGATTTCAAATAATCCACAGTCAAAAGATGATTTCATAGCAACCAGTAAAAATGTTACAGACAACCCTTACGATACAGTTCAATACATCCTTCGAGGTCGAAAAAGTATTAAATTGCCTTGGATGGCGAAACCAATGGAAGCTCATCACAGTAGTTGGTACGTCAAATGGTTGTATTTGGCCTGGGTAGTGGCACCGACAACATCAGTGGCAATGGTACTGATACTCGATACATTGCCTCAGAATTTTATTGGGAAGCATATATGGGGACTGATTCTGTCGGATTTAGTTTATTTTGCCAATTTCATTGCAGAATTTTACACTATGGAACTACAAGTAGTCCAGAATAAATGTGTAAAACGCAAGATTGGTTTTGGAGTTTTCAGAACATGGGGATTTTACATTGACGCTACAACTTTAGTGTTGCCTTTGTTGACTTTAGTGTCCAACAATTGGAACTATCAGTTGATCAGGTTTCTAAGGCTAAGACAGTTTTACTATTTTCACAACAGTTTTTGCAGGAGTTTCAAGAGTAAAGCGGCACCCATGATATTAAAAACGACAATCGTGCTGTTGTTGTTCCACGCTATGACTTGTGGATGGATTCACGTTGCTTGCAGAGGTGAATTTCCATTACCAATTGAATTGGTACCCGAAATTAATGTAACCATAGATTACGACGAGTGGACAATACCGGGTATTCGATATGGAGGCTGTGCAAGAGTCACTAAAAACTACAAGCCTGAACGCTTTAAGATGCCTAGTTTTGTTGTGCCAAAGGATTGGCATAACGACTACATTATAGCCTTGACATTTATTCTTCTTATTCATACACGTACTACTTATGATGCTGTGATTGCTTTATCTCCATCTCAAGTGCTTTATAAAGTTATTATAAACTATTTCATCTTCATAATCGACATGTGGTTGATCAGTGTTGCCATGGGCGCGACCTACACGAAATTTCGTGAGCTATACCAGTACGACTATAATGTCGGCAATTTGATCACGTGTCTGCAACATAGAGGTCTGTCGCCCACATTATTGGAATCTGTTAAAGAGTACACAAAACAACTATGGAGGAGACAAAGAGGTAATTGGCTTCCTGAATTAGCAGGACAGGCACCAGTTTGTCTTCGCGAAGATCTTATGGAGGCGCTATATATGCATCATCTAACTGCTCCTCCGTTATTTCAAAAACTTCCACAATACTTCAGACGTCAATTGGTCTCTAGATTACAAAGGATCGTCATTTTTCCGGGTTGTCGATTTGGTTTTTTTAAAATTCAACGACTGGCAAGATCTATTAGAGGGATATCCAGATATAAAACATGA

Protein

MIVREMDLNSSIYVVHRGKVVISQGGKKITTLTKGCIFGQLTDDVSRPIKISASAESHADLLQISNKQFQDFITDEVRDTISNNPQSKDDFIATSKNVTDNPYDTVQYILRGRKSIKLPWMAKPMEAHHSSWYVKWLYLAWVVAPTTSVAMVLILDTLPQNFIGKHIWGLILSDLVYFANFIAEFYTMELQVVQNKCVKRKIGFGVFRTWGFYIDATTLVLPLLTLVSNNWNYQLIRFLRLRQFYYFHNSFCRSFKSKAAPMILKTTIVLLLFHAMTCGWIHVACRGEFPLPIELVPEINVTIDYDEWTIPGIRYGGCARVTKNYKPERFKMPSFVVPKDWHNDYIIALTFILLIHTRTTYDAVIALSPSQVLYKVIINYFIFIIDMWLISVAMGATYTKFRELYQYDYNVGNLITCLQHRGLSPTLLESVKEYTKQLWRRQRGNWLPELAGQAPVCLREDLMEALYMHHLTAPPLFQKLPQYFRRQLVSRLQRIVIFPGCRFGFFKIQRLARSIRGISRYKT

Uniprot

A0A2H1VVY2 A0A2A4JVZ8 A0A2A4JX54 A0A2W1BAH4 A0A139WMM2 A0A2A4JFL8 + More
E0V9V2

Pubmed

28756777 18362917 19820115 20566863

EMBL

ODYU01004603 SOQ44662.1 NWSH01000505 PCG75989.1 PCG75990.1 KZ150182 + More
PZC72489.1 KQ971312 KYB29220.1 NWSH01001558 PCG70867.1 DS234996 EEB10158.1

Proteomes

UP000218220 UP000007266 UP000009046

Pfam

PF00027   cNMP_binding        + More
PF07885   Ion_trans_2
PF08561   Ribosomal_L37
PF00520   Ion_trans

Interpro

IPR000595   cNMP-bd_dom        + More
IPR014710   RmlC-like_jellyroll
IPR018490   cNMP-bd-like
IPR013870   Ribosomal_L37_mit
IPR013099   K_chnl_dom
IPR027359   Volt_channel_dom_sf
IPR005821   Ion_trans_dom
IPR018488   cNMP-bd_CS

SUPFAM

SSF51206 SSF51206

Gene 3D

2.60.120.10 1.20.120.350

CDD

cd00038 CAP_ED

ProteinModelPortal

A0A2H1VVY2 A0A2A4JVZ8 A0A2A4JX54 A0A2W1BAH4 A0A139WMM2 A0A2A4JFL8 + More
E0V9V2

PDB

6CJU E-value=0.00120271, Score=101

KEGG

101743360 no KO assigned | (RefSeq) cyclic nucleotide-gated ion channel 1-like

GO

GO:0016021 GO:0005887 GO:0071805 GO:0005249 GO:0042391 GO:0005216

Length:

523

Number of predicted TMHs:

6

Exp number of AAs in TMHs:

121.83307

Exp number, first 60 AAs:

0.00836

Total prob of N-in:

0.79376

inside

1 - 131

TMhelix

132 - 154

outside

155 - 163

TMhelix

164 - 183

inside

184 - 203

TMhelix

204 - 226

outside

227 - 258

TMhelix

259 - 281

inside

282 - 344

TMhelix

345 - 367

outside

368 - 376

TMhelix

377 - 399

inside

400 - 523

Pi

259.618294

Theta

154.005191

Tajima's D

1.075167

CLR

0.088539

CSRT

0.678266086695665

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics