Silkworm Genome Informatics Database

Gene

KWMTBOMO04368

Annotation

reverse_ribonuclease_integrase?_partial_[Lasius_niger]

Location

Bomo_Chr8(+):4709683-4714323 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.868

CDS

ATGGTTTTTACGATAAAATTTTTATCCCTACAAAAAACTGAACTGGAATACGAAGTCGCGATAAGAGGTGAGACCCCCGGTGCTACGGTGGCTGATCTTAGGAAACAGATTAGCAAATTAAGTCAATCTTTTCCTTCAGAAGATATATTATGTTCTCATCTCGAACCCCTAGATGATCTTCAAGCTGTTTTGGACTTGCTGAATAAAGTCAATGCAAGTCTCGAGTCAAGCCCTACTGATAAAAGTACATTATCGCGCATAGAAAATATTTTTCATCACCTTTATCATAGGATCAACAGAATAGTGGTTGATGAAGTAGAGAAGCCGCACTCTGCTTGTAGTAAACTTTTTAAAGAATCCTACGAAAAATTCCAGAAATTAAGCAAAAAGGCAGTTGACCCTCTATTAGTTTGTGTATCTAGTTCAGCATCTGCTTCTGTACCTGGCATTCAGGCACCAATTAATGTCGCTGTTACTTGTGATAGAGGTGTTACTTCAGAACTGAGTAGGCTGAAGTTCGATGGTAAATCATGTGTTCGATCTTTTATTCAACGTGTTTACGAATTTAGCGAGGCTCGTAGCATCCCCGACTCAAAACTTATCTCATCTGCTACAGAAATATTTACAGATGATGCGCTGCATTGGTTCAGGAGTGTTAAGGACCAGGTTTCATCTTGGGATGATCTTGTTATTCTTTTAAAAAAAGATTTTGATAAAGCAGACTATGATTACCGTTTACTTGCTGAGATTCGTGCTAGGACTCAAGGGGAAACGGAAAATATTACGATCTACTTAGCTATTCTCTCGGTTTCCGGCCTTTTGGATTCAGGCTCAGCGGTTACTATTTTAGGCAACAATGCTCATAGTGCATTAGTTAGTCGTGGGCTGGAGTTGTGTACTGATGATAAATTGACTATTATTGCAGCTGGTGGACAAAATCTTAAAAGTATAGGCTATATTAATATGCCAGTGCATTTCGAAAACCAGTTCCATATTATTCAGAGTCACGTAGTTCCAGAAGTTCAATCATCGCTTATTTTAGGGATAGACTTTTGGCACACATTTAAAATTTGCCCGAAGTACTTAAGTTCTCTTCATTTCCCCGGCCCTCCATTGGCTAATTTAGATGTTGGTAGCCCAACAAATTTTTTGCGCTCGTATGATTATTTGGATGAATCACAAAAAGCCGTCGTTGACAATATTACCAGGCAGTTTGAAGAAATATCTTTTGAGCGCAAAGGACTTGGACGCACAAACTTAATTACTCACCACATCGACACGGGGAATTCTCCTCCTGTGAGACAGCGCTACTATAGGCTTTCACCAGAAAAACAGAGAATCCTAGTCGAGCAAGTAGACGAAATGCTCCAGCTTGATGTAGTTGAGCCTTGTGAGAGTGCCTGGCAATCCCCGGTATTGCTAGTCACTAAAAAAGATGGTCAGCCACGGTTTTGCTTAGATAGTAGGAAGCTAAACTCTGTTACAAAACGTGACGCTTATAACTTACCTTACATATCGGAGATATTGGACAACTTGCGAGACGCGCGCTATCTTAGCAGTATTGACTTATCAAAGGCTTTCTGGCAATTACCAATAGCACTCGAAGATAGGGACAAGACGGCATTTTACGTTCCGGGACGAGGGACGTTACGGTTTAAGACTACACCGTTTGGTTTGACCAATGCGCCTTCTACGCAACAGCGGTTAGTCGATTTATTGTTTGGCAACATGGATCACAAGGCGTTCGCATATTTAGATGATGTGATAATAGTAAGTAGCACGTTTGATGAGCATGTTAGTCTTCTTCTTCGCGTGTTAGACAAACTGCGCCATGCTAATCTAACAATTAATTTAGAAAAGTGTGAATTTTTTCGAAGTAAACTTAAATATTTAGGCTATGTGGTCGACGCGAATGGTTTGCGGACTGATCCGGATAAAGTTACAGCCATTCTAAATTACCCAACTCCTACATGTCGTAAGGACTTGAAACGGTTCCTAGGCACGGCAACATGGTACCGGAGATTTGTCCCAAACTTTAGCACTATCGCAGGGCCGCTTAATAGGTTGACATCGAACAAAAAATCAACACCTCCCTTCCAGTGGACAGATGAGGCCGACACTGCGTTCAAAAAACTTAAGGAATCTTTGGTCTCTGCACCTGTTCTCTCCTGTCCAAATTATGATCTGCCTTTCGAAGTCCATACAGATGCTAGTAACTATGGGATAGGTGGTATGCTCACACAAACTATTGACGGGAAAGAGCACCCTATAGCGTATATGAGCAAGTCCTTATCGGGGGCCGAAAAGAATTATAGCATTACCGAACGTGAGACCTTAGCTGTTCTCGTGGCTCTCGAGCACTGGCGTTGCTATCTGGAGAACGGAAAGACGTTCACAGTTTACACAGACCACAGCGCACTTAAGTGGTTCCTTTCCTTGAACAATCCTACGGGTAGGCTTGCACGTTGGGGAGTTCGATTATCGTCGTTTGATTTTGAAATCAAACACCGCCGCGGTGTAGACAATGTGATTCCCGACGCTTTGTCTAGAGCTGTCCCGGTCAATACTATCACTACTGCTAAATCACTCACGACTTCTAGTGATGATTGAAAGCCTTTTGAATTTAATGTAGGAGATACTGTTTATAAACGCGCTTACGTCCTGAGTGACAAAGATAAGTATTTTAGTAAGAAGTTAGCACCGAAATATATCAAGTGCAAAGTTGTCGAAAAACTCTCGCCACTTGTCTACGTCCTAGAAGACATGTCGGGTAAAAACATAGGCACTTGGCATATTAAAGACTTGAAAATATTAGGACAACACTCATAG

Protein

MVFTIKFLSLQKTELEYEVAIRGETPGATVADLRKQISKLSQSFPSEDILCSHLEPLDDLQAVLDLLNKVNASLESSPTDKSTLSRIENIFHHLYHRINRIVVDEVEKPHSACSKLFKESYEKFQKLSKKAVDPLLVCVSSSASASVPGIQAPINVAVTCDRGVTSELSRLKFDGKSCVRSFIQRVYEFSEARSIPDSKLISSATEIFTDDALHWFRSVKDQVSSWDDLVILLKKDFDKADYDYRLLAEIRARTQGETENITIYLAILSVSGLLDSGSAVTILGNNAHSALVSRGLELCTDDKLTIIAAGGQNLKSIGYINMPVHFENQFHIIQSHVVPEVQSSLILGIDFWHTFKICPKYLSSLHFPGPPLANLDVGSPTNFLRSYDYLDESQKAVVDNITRQFEEISFERKGLGRTNLITHHIDTGNSPPVRQRYYRLSPEKQRILVEQVDEMLQLDVVEPCESAWQSPVLLVTKKDGQPRFCLDSRKLNSVTKRDAYNLPYISEILDNLRDARYLSSIDLSKAFWQLPIALEDRDKTAFYVPGRGTLRFKTTPFGLTNAPSTQQRLVDLLFGNMDHKAFAYLDDVIIVSSTFDEHVSLLLRVLDKLRHANLTINLEKCEFFRSKLKYLGYVVDANGLRTDPDKVTAILNYPTPTCRKDLKRFLGTATWYRRFVPNFSTIAGPLNRLTSNKKSTPPFQWTDEADTAFKKLKESLVSAPVLSCPNYDLPFEVHTDASNYGIGGMLTQTIDGKEHPIAYMSKSLSGAEKNYSITERETLAVLVALEHWRCYLENGKTFTVYTDHSALKWFLSLNNPTGRLARWGVRLSSFDFEIKHRRGVDNVIPDALSRAVPVNTITTAKSLTTSSDDXKPFEFNVGDTVYKRAYVLSDKDKYFSKKLAPKYIKCKVVEKLSPLVYVLEDMSGKNIGTWHIKDLKILGQHS

Uniprot

A0A0J7K1V9 A0A1B6IL28 A0A0J7KA76 A0A0J7K8R1 A0A182H681 A0A0J7K794 + More
A0A3B3BX27

Pubmed

26483478 29451363

EMBL

LBMM01016885 KMQ84279.1 GECU01030157 GECU01020076 JAS77549.1 JAS87630.1 + More
LBMM01010645 KMQ87338.1 LBMM01011454 KMQ86828.1 JXUM01028079 KQ560809 KXJ80804.1 LBMM01012378 KMQ86252.1

Proteomes

UP000036403 UP000069940 UP000249989 UP000261560

Pfam

PF17921   Integrase_H2C2        + More
PF17917   RT_RNaseH
PF00078   RVT_1
PF00665   rve
PF17919   RT_RNaseH_2
PF03732   Retrotrans_gag
PF00098   zf-CCHC

Interpro

IPR001969   Aspartic_peptidase_AS        + More
IPR041588   Integrase_H2C2
IPR000477   RT_dom
IPR041373   RT_RNaseH
IPR034122   Retropepsin-like_bacterial
IPR021109   Peptidase_aspartic_dom_sf
IPR036397   RNaseH_sf
IPR012337   RNaseH-like_sf
IPR001995   Peptidase_A2_cat
IPR041577   RT_RNaseH_2
IPR001584   Integrase_cat-core
IPR003034   SAP_dom
IPR005162   Retrotrans_gag_dom
IPR036875   Znf_CCHC_sf
IPR001878   Znf_CCHC

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098
SSF57756   SSF57756

Gene 3D

2.40.70.10 3.30.420.10

CDD

cd05483 retropepsin_like_bacteria

ProteinModelPortal

A0A0J7K1V9 A0A1B6IL28 A0A0J7KA76 A0A0J7K8R1 A0A182H681 A0A0J7K794 + More
A0A3B3BX27

PDB

4OL8 E-value=1.15239e-71, Score=690

KEGG

102466074 no KO assigned | (RefSeq) Mir3406, bmo-mir-3406; microRNA 3406

GO

GO:0004190 GO:0015074 GO:0003676 GO:0008270 GO:0006508 GO:0016311 GO:0016791 GO:0006470 GO:0004674 GO:0009058 GO:0016742 GO:0003824

Length:

942

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0572300000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00244

outside

1 - 942

Pi

18.145567

Theta

14.628233

Tajima's D

1.395331

CLR

1.587391

CSRT

0.768911554422279

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree