SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04359
Annotation
PREDICTED:_protein_unc-13_homolog_C-like_[Amyelois_transitella]
Location in the cell
Nuclear   Reliability : 2.667
 

Sequence

CDS
ATGGATCTGAAACTTATAAATAGTCTAGAAAGCCTCGAGAAGCTTTTCCAAACACGTATGAACGACTATGACCTGAAGCTGCAGAAGGCATCTACCGGAGCTGTTCCAGCACATGTCGATATTTCAACTTTATCGCGTGAGTTTAATGATTTTAAAGCTTTTGTGTGGCAAACACTTTCTCAGATGAAGACCCAGATTGAGCTTCTCAGCCTCGGGTTGGATAGGCATGAGACCATGATGAGAAGAAAAGTTCTACTTCTACATGGTATTCCTGAAAATAAAAATGAAAAATTGCACAAATCTATTGTTGAAGTTTTCACTAGAAACATGAAACTCCCTGAAATTTGCATAGAACATATCAACAATTGTCATCGGCTCGGCAATTCTCAGGGCAAAGTCAGACCTGTCCTAGTGCGTTTCTGCAGCATGGAGCATCGCAATGTTGTATGGGATAATAAAACCAATCTGAAAGGCTCTGGAATCACTGTCTCTGAATTTCTCACCAAAACGAGACACAAGATCTTCACTGCTGCCCGACAACATTTTAGCGTCGGTAACTGCTGGTCAGTGGAAGGAAAAATTGTCATTCTAACACCTGACAAAACTCGTCATAAAATTGAGTGTAAGTCTGAACTGGACGCCTTAACATCCCGATACCCTGCTGCTGCGGCCATCCATAATTCTCCACGGACCAATGATGACCGCGAGACTGCCAAATCTCAGCCAAAAGTGACCAAATCAAGTCGGCGCCGCGTTTAG
Protein
MDLKLINSLESLEKLFQTRMNDYDLKLQKASTGAVPAHVDISTLSREFNDFKAFVWQTLSQMKTQIELLSLGLDRHETMMRRKVLLLHGIPENKNEKLHKSIVEVFTRNMKLPEICIEHINNCHRLGNSQGKVRPVLVRFCSMEHRNVVWDNKTNLKGSGITVSEFLTKTRHKIFTAARQHFSVGNCWSVEGKIVILTPDKTRHKIECKSELDALTSRYPAAAAIHNSPRTNDDRETAKSQPKVTKSSRRRV

Summary

EMBL
NWSH01000981    PCG73266.1    KZ150731    PZC70355.1    KZ149998    PZC75357.1    + More
NWSH01000709    PCG74665.1    KZ150113    PZC73314.1    JTDY01004815    JTDY01001265    KOB67717.1    KOB74342.1    NWSH01002122    PCG69097.1    NWSH01001172    PCG72268.1    JTDY01004162    KOB68510.1    NWSH01004711    PCG64730.1    ODYU01005692    SOQ46801.1    BABH01019446    BABH01019447    BABH01019448    BABH01019449    BABH01019450    NWSH01004248    PCG65306.1    JTDY01007405    KOB65227.1    NWSH01000964    PCG73374.1    ODYU01012456    SOQ58773.1    JTDY01002460    KOB71369.1    NWSH01000800    PCG74117.1    ODYU01006869    SOQ49099.1    KZ150083    PZC73827.1    NWSH01000512    PCG75926.1    KZ149916    PZC77943.1    NWSH01001465    PCG71162.1    PCG71163.1    NWSH01008089    PCG62701.1    NWSH01000695    PCG74738.1    JTDY01016995    KOB51870.1    NWSH01002863    PCG67420.1    JTDY01009052    KOB64154.1    JTDY01015832    KOB51930.1    JTDY01001444    KOB73845.1    KZ150737    PZC70349.1    NWSH01001639    PCG70611.1    NWSH01000574    PCG75564.1    NWSH01000281    PCG77797.1    JTDY01004770    KOB67785.1    JTDY01010087    KOB61249.1    KOB61251.1    JTDY01000147    KOB78598.1    JTDY01003374    KOB69654.1    JTDY01009601    KOB63242.1    GAIX01004118    JAA88442.1    JTDY01010801    JTDY01009435    KOB57999.1    KOB63512.1    KOB73846.1    ODYU01003266    SOQ41795.1    JTDY01005020    KOB67468.1    ODYU01010789    SOQ56106.1    JTDY01000235    KOB78128.1    RSAL01001827    RVE40669.1    JTDY01009138    KOB64057.1    JTDY01000521    KOB76815.1    GEZM01088631    JAV58061.1    GEZM01053114    JAV74176.1    GEZM01072435    JAV65521.1    MRZV01000765    PIK44633.1    MRZV01000289    MRZV01000115    PIK53395.1    PIK58356.1   
Pfam
PF00027   cNMP_binding        + More
PF01582   TIR
PF14529   Exo_endo_phos_2
Interpro
IPR004244   Transposase_22        + More
IPR000595   cNMP-bd_dom       
IPR014710   RmlC-like_jellyroll       
IPR018490   cNMP-bd-like       
IPR035897   Toll_tir_struct_dom_sf       
IPR000157   TIR_dom       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
SUPFAM
SSF51206   SSF51206        + More
SSF52200   SSF52200       
SSF56219   SSF56219       
Gene 3D

Ontologies

Topology

Length:
252
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00589
Exp number, first 60 AAs:
0.00167
Total prob of N-in:
0.03228
outside
1  -  252
 
 

Population Genetic Test Statistics

Pi
283.003308
Theta
206.335833
Tajima's D
1.169708
CLR
10.768477
CSRT
0.704364781760912
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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