Gene

KWMTBOMO04354

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr8(+):4196323-4197631      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 1.896

CDS

ATGGTCAGGAACGACAGGCTCTCTGCTCGTGGTGGTGGTACCGTCATTTACTATAGAAGAGCCCTGCATTGCGTCCCGCTCGATCCTCCCGCGCTCGCTAATATCGAAGCATCAGTGTGCCGAATCTCACTGACGGGACACGCGCCGATCGTTATCGCGTCCGTTTATCTTCCACCGGATAAGATCGTTCTAAGCAGTGATATCGAGGCGCTGCTCGGCATGGGGAGCTCTGTCATTCTGGCGGGCGACCTAAATTGTAAACACATCAGGTGGAACTCACACACCACAACCCCGAATGGCAGGCGGCTTGACGCGTTAGTCGATGATCTCGCCTTCGATATCGTCGCTCCGCTAACACCGACTCACTACCCGCTAAATATCGCGCATCGCCCGGATATACTTGACATAGCGTTATTAAAAAACGTAACTCTGAGCTTACACTCGATCGAAGTAGTTTCAGAGTTAGATTCAGACCACCGTCCCGTCGTTATGAAGCTCGGTCGCGCTCCCGACTCCGTTCCCGTCACGAGGACTGTGGTGGATTGGCACACGCTGGGCATCAGCCTGGCTGAATCTGATCCACCATCGCTCCCGTTTAACCCGGACTCTACCCCGTCTCTTCAGGATACCGCTGAAGCCATAGACATTTTAACGTCACACATCACCTCAACATTAGATAGATCATCGAAACAAGTTGTAGCGGAGGACTTCCTTCACCGCTTCAAATTGTCCGATGATATTAGGGAACTCCTTAGAGCTAAGAACGCCTCGATACGCGCCTACGACAGGTATCCTACCGCGGAAAATCGTATTCGAATGCGTGCCCTACAACGCGACGTAAAGTCTCGCATCGCCGAAGTCCGAGATGCCAGATGGTCTGATTTCTTAGAAGGACTCGCGCCCTCCCAAAGGTCTTACTACCGCTTAGCTCGTACTCTCAAATCGGATACGGTAGTAACTATGCCCCCCCTCGTAGGCCCCTCAGGCCGACTCGCGGCGTTTGATGATGACGAAAAAGCAGAGTTGCTGGCCGATACATTGCAAACCCAGTGCACCCCCAGCACTCAATCCGTGGACCCTGTTCATGTAGAATTAGTAGACAGTGAGTTAAAGACTTGA

Protein

MVRNDRLSARGGGTVIYYRRALHCVPLDPPALANIEASVCRISLTGHAPIVIASVYLPPDKIVLSSDIEALLGMGSSVILAGDLNCKHIRWNSHTTTPNGRRLDALVDDLAFDIVAPLTPTHYPLNIAHRPDILDIALLKNVTLSLHSIEVVSELDSDHRPVVMKLGRAPDSVPVTRTVVDWHTLGISLAESDPPSLPFNPDSTPSLQDTAEAIDILTSHITSTLDRSSKQVVAEDFLHRFKLSDDIRELLRAKNASIRAYDRYPTAENRIRMRALQRDVKSRIAEVRDARWSDFLEGLAPSQRSYYRLARTLKSDTVVTMPPLVGPSGRLAAFDDDEKAELLADTLQTQCTPSTQSVDPVHVELVDSELKT

Subunit

The nucleosome is a histone octamer containing two molecules each of H2A, H2B, H3 and H4 assembled in one H3-H4 heterotetramer and two H2A-H2B heterodimers. The octamer wraps approximately 147 bp of DNA.

Similarity

Belongs to the histone H2A family.

Uniprot

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
U4UGQ8   A0A1B6MIM7   X1WNI2   X1WK15   A0A139W8G9   A0A2S2P6H1   K7IN67   A0A2S2QV22   J9LC21   A0A023EYS8   A0A2S2NJB5   A0A087THU2   V5GNJ2   A0A087U3K8   A0A0J7K0R9   J9LR29   X1WQI9   A0A087T3W0   J9KRU7   J9LVT4   A0A1Y1MZU1   A0A2S2QEE0   X1X0M4   A0A1B6MLS9   T1ID59   A0A139WA11   A0A224X6Q4   J9KPF1   A0A224XB44   J9LHE0   A0A2S2QQB9   A0A2S2PPK8   J9LPH9   A0A2J7PP17   A0A0L7KVB3   J9KKL6   J9LFC9   X1WZH0   X1WLB2   A0A087UCW3   A0A069DZL8   A0A1Y1K0C8   A0A2S2N6Q7   J9JS95   A0A2S2PJ52   A0A224X6S1   V5GNF3   X1WVL6   X1WX08   A0A224X6W2   A0A1B6C2V8   A0A2S2PEZ9   X1X033   U4UJ93   A0A224X6T4   A0A2H8TF37   Q24335   J9MAR0   A0A087UGF5   A0A2S2QDN9   A0A087UB64   A0A2G3AQH2   A0A0J7K3N0   A0A2J7QY69   A0A2J7QR37   A0A2J7PBY3   A0A2S2P6S3   A0A2J7R7D0   A0A0L7L9V8   A0A2J7RE85   A0A0L7K4J3   A0A0L7L3F7   A0A2S2N960   A0A087UI90   A0A2J7RB85   A0A2S2PXP7   A0A1Y1MT28   J9KR26   J9LK81   A0A2A4IUM2   A0A0L7LN74   A0A2S2PXP8   A0A2J7PU96   A0A2S2NCK2   A0A224XJI0   A0A2J7Q6J2   A0A2J7QB68   A0A0J7K503   A0A224XF24   A0A023F0I3   A0A2S2Q383   A0A023EZE6  

Pubmed

10333566    26354079    10380107    28004739    23537049    18362917    + More
19820115    20075255    25474469    26227816    26334808    2441397    29089032   

EMBL

U07847    AAA17752.1    AB055391    BAB21761.1    AB018558    BAA76304.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    GEZM01008457    JAV94772.1    KB632143    ERL89075.1    GEBQ01004157    JAT35820.1    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02012584    ABLF02013765    ABLF02024884    KQ973342    KXZ75569.1    GGMR01012189    MBY24808.1    GGMS01012398    MBY81601.1    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    GBBI01004395    JAC14317.1    GGMR01004661    MBY17280.1    KK115285    KFM64681.1    GALX01005299    JAB63167.1    KK118005    KFM71947.1    LBMM01018021    KMQ83899.1    ABLF02025082    ABLF02039175    ABLF02041809    ABLF02022418    KK113281    KFM59799.1    ABLF02010814    ABLF02010815    ABLF02037860    ABLF02037869    ABLF02003241    ABLF02003242    ABLF02025904    GEZM01021868    JAV88847.1    GGMS01006359    MBY75562.1    ABLF02065839    GEBQ01003077    JAT36900.1    ACPB03027378    KQ971729    KYB24751.1    GFTR01008279    JAW08147.1    ABLF02041767    GFTR01008262    JAW08164.1    ABLF02014934    ABLF02014939    ABLF02017810    GGMS01010725    MBY79928.1    GGMR01018716    MBY31335.1    ABLF02009591    ABLF02009592    ABLF02009594    ABLF02066703    NEVH01023280    PNF18085.1    JTDY01005246    KOB67202.1    ABLF02015631    ABLF02021986    ABLF02021987    ABLF02021991    ABLF02023911    ABLF02034467    ABLF02042518    ABLF02057746    KK119261    KFM75202.1    GBGD01000415    JAC88474.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    GGMR01000226    MBY12845.1    ABLF02028535    ABLF02028545    GGMR01016297    MBY28916.1    GFTR01008271    JAW08155.1    GALX01005359    JAB63107.1    ABLF02042385    ABLF02043963    GFTR01008260    JAW08166.1    GEDC01029594    JAS07704.1    GGMR01015412    MBY28031.1    ABLF02066437    KB632327    ERL92508.1    GFTR01008261    JAW08165.1    GFXV01000908    MBW12713.1    M17214    AAA28508.1    ABLF02037715    KK119692    KFM76444.1    GGMS01006655    MBY75858.1    KK119069    KFM74603.1    MCIT02004487    PHT96476.1    LBMM01015125    KMQ84919.1    NEVH01009134    PNF33528.1    NEVH01011985    PNF31054.1    NEVH01027074    PNF13841.1    GGMR01012443    MBY25062.1    NEVH01006736    PNF36716.1    JTDY01002082    KOB72150.1    NEVH01005277    PNF39135.1    JTDY01011738    KOB53653.1    JTDY01003188    KOB69997.1    GGMR01001088    MBY13707.1    KK119923    KFM77079.1    NEVH01005923    PNF38085.1    GGMS01000479    MBY69682.1    GEZM01021881    JAV88842.1    ABLF02003895    ABLF02006045    ABLF02035991    ABLF02066257    ABLF02023551    ABLF02023561    NWSH01007753    PCG62823.1    JTDY01000526    KOB76804.1    GGMS01001094    MBY70297.1    NEVH01021205    PNF19912.1    GGMR01002322    MBY14941.1    GFTR01008257    JAW08169.1    NEVH01017470    PNF24199.1    NEVH01016302    PNF25823.1    LBMM01014024    KMQ85369.1    GFTR01008038    JAW08388.1    GBBI01003747    JAC14965.1    GGMS01002992    MBY72195.1    GBBI01004571    JAC14141.1   

Proteomes

UP000053268    UP000030742    UP000007819    UP000007266    UP000002358    UP000054359    + More
UP000036403    UP000015103    UP000235965    UP000037510    UP000224522    UP000218220   

PRIDE

Q93137    Q9BPQ0    Q9XXW0    Q24335   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF14291   DUF4371
PF07530   PRE_C2HC
PF05699   Dimer_Tnp_hAT
PF07727   RVT_2
PF03372   Exo_endo_phos
PF03564   DUF1759
PF18701   DUF5641
PF00665   rve
PF05380   Peptidase_A17
PF17921   Integrase_H2C2
PF05585   DUF1758
PF16211   Histone_H2A_C
PF00125   Histone

Interpro

IPR036691   Endo/exonu/phosph_ase_sf        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR000477   RT_dom       
IPR025398   DUF4371       
IPR006579   Pre_C2HC_dom       
IPR012337   RNaseH-like_sf       
IPR008906   HATC_C_dom       
IPR006580   Znf_TTF       
IPR013103   RVT_2       
IPR041588   Integrase_H2C2       
IPR036397   RNaseH_sf       
IPR005312   DUF1759       
IPR040676   DUF5641       
IPR008737   Peptidase_asp_put       
IPR008042   Retrotrans_Pao       
IPR001584   Integrase_cat-core       
IPR032458   Histone_H2A_CS       
IPR002119   Histone_H2A       
IPR032454   Histone_H2A_C       
IPR007125   Histone_H2A/H2B/H3       
IPR009072   Histone-fold       
IPR020847   AP_endonuclease_F1_BS       

SUPFAM

SSF56219   SSF56219        + More
SSF53098   SSF53098       
SSF47113   SSF47113       

Gene 3D

3.60.10.10     3.30.420.10     1.10.20.10    

CDD

cd00074  H2A

ProteinModelPortal

Q93137   Q9BPQ0   Q9XXW0   A0A0N1PFV1   O96546   A0A1Y1NA23   + More
U4UGQ8   A0A1B6MIM7   X1WNI2   X1WK15   A0A139W8G9   A0A2S2P6H1   K7IN67   A0A2S2QV22   J9LC21   A0A023EYS8   A0A2S2NJB5   A0A087THU2   V5GNJ2   A0A087U3K8   A0A0J7K0R9   J9LR29   X1WQI9   A0A087T3W0   J9KRU7   J9LVT4   A0A1Y1MZU1   A0A2S2QEE0   X1X0M4   A0A1B6MLS9   T1ID59   A0A139WA11   A0A224X6Q4   J9KPF1   A0A224XB44   J9LHE0   A0A2S2QQB9   A0A2S2PPK8   J9LPH9   A0A2J7PP17   A0A0L7KVB3   J9KKL6   J9LFC9   X1WZH0   X1WLB2   A0A087UCW3   A0A069DZL8   A0A1Y1K0C8   A0A2S2N6Q7   J9JS95   A0A2S2PJ52   A0A224X6S1   V5GNF3   X1WVL6   X1WX08   A0A224X6W2   A0A1B6C2V8   A0A2S2PEZ9   X1X033   U4UJ93   A0A224X6T4   A0A2H8TF37   Q24335   J9MAR0   A0A087UGF5   A0A2S2QDN9   A0A087UB64   A0A2G3AQH2   A0A0J7K3N0   A0A2J7QY69   A0A2J7QR37   A0A2J7PBY3   A0A2S2P6S3   A0A2J7R7D0   A0A0L7L9V8   A0A2J7RE85   A0A0L7K4J3   A0A0L7L3F7   A0A2S2N960   A0A087UI90   A0A2J7RB85   A0A2S2PXP7   A0A1Y1MT28   J9KR26   J9LK81   A0A2A4IUM2   A0A0L7LN74   A0A2S2PXP8   A0A2J7PU96   A0A2S2NCK2   A0A224XJI0   A0A2J7Q6J2   A0A2J7QB68   A0A0J7K503   A0A224XF24   A0A023F0I3   A0A2S2Q383   A0A023EZE6  

KEGG

NA   

GO

GO:0003964   GO:0004519   GO:0016021   GO:0046983   GO:0003676   GO:0015074   GO:0046982   GO:0000786   GO:0003677   GO:0005634   GO:0006281  

Subcellular location

Chromosome  
Nucleus  

Length:

372

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0742199999999999

Exp number, first 60 AAs:

0.05439

Total prob of N-in:

0.04733

outside

1  -  372

 

 

Pi

0

Theta

0

Tajima's D

0

CLR

0.59593

CSRT

0

Interpretation

Uncertain