Gene

KWMTBOMO04344  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA005270

Annotation

PREDICTED:_translocation_protein_SEC62_[Amyelois_transitella]

Location

Bomo_Chr8(+):3977050-3994872      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.3

CDS

ATGGCTGATAAAAGAAAGACTAAAAAACGCAAAGATGACTTCGGGGAACCTCCAGAGTCTGAGAAGCCAACGAGCGAAGAGTACGCAGTCGCGAAATGGCTCAAAGCGAACGTACCAACGAAGAAAACAAAATTTCTAAATCACCACGTGGAATATTTCACAGGTACAAAGGCTGTAGATGCCTTGTTGACTTCAAAATGGGCGACCGGCAAGAATCCAGCGTTCACCACAAGAATCGAAGTGACTCATTACTTGCATCGTATGCTTTTGCATAAACTCTTCCACAGGGCCAAGAAGGTCCCTGTGAGCGAGCAAGAATTAAAAGGTAAATCAAAAAAGAAGGAATCCGAGAAGATCAGTAAGAGCGGCGATGAAAAGGATGGAGAGAAAAGCCAAGCCAGCGCCTGCGAGGGAAAGGATACAAAAGACGGTAAAGAGAAAGAGAAGAAGAAAAGGAAGATACGTCTAGAGATGCATATGGAGCAAGTTTTCCTAGATACAGTCGATGCTTACGTCTGGATTTACGATCCGAAGCCCTGGTACTACTGGGTCTGCGGGATTCTGGTCGTCTTTGGAACGATCACAGTTTGCATGTTCCCACTCTGGCCGGCCACTGTTAGGATAGGAGTATATTACCTGAGCATAGCGGCGGCGGCTTTCCTCGTGATGATAATAGGGCTGACCGTGCTCCGCGTGGTCGTCTTCTGTCTGGTCTGGATCCTGACGTTGTCCAGGCATCACCTCTGGCTGTTACCAAACCTTACCGAGGACGTCGGGTTCTTCGCGTCCTTCTGGCCTCTTTACCACTACGAATACCGCGGTCCCGGCTCGGACAGCGACAAGGCGTCGAAGAACAAGAAGAAACGCAAGAAAGACAAGCTCTCCGATGATGAAACCGAAAAGACTCCGCTGATTGATGACAAAAGCACAGCCGAAGCTCAAGCCGAAGACGTCGGTAGCGGGGATGCTAAATCGTCAGAATTAGATGCAACATCGGCCACTACAGATAAACTGTCCGAATCTGAATCGGAGAACAGTCAGCGGTCATCGACCGACCGGGACTTTGAGATCGTCGACCACGATGAAGTGGAACCCGTCGTGGGAGATAAACCCCTTTAG

Protein

MADKRKTKKRKDDFGEPPESEKPTSEEYAVAKWLKANVPTKKTKFLNHHVEYFTGTKAVDALLTSKWATGKNPAFTTRIEVTHYLHRMLLHKLFHRAKKVPVSEQELKGKSKKKESEKISKSGDEKDGEKSQASACEGKDTKDGKEKEKKKRKIRLEMHMEQVFLDTVDAYVWIYDPKPWYYWVCGILVVFGTITVCMFPLWPATVRIGVYYLSIAAAAFLVMIIGLTVLRVVVFCLVWILTLSRHHLWLLPNLTEDVGFFASFWPLYHYEYRGPGSDSDKASKNKKKRKKDKLSDDETEKTPLIDDKSTAEAQAEDVGSGDAKSSELDATSATTDKLSESESENSQRSSTDRDFEIVDHDEVEPVVGDKPL

Uniprot

H9J6X8   A0A2H1WA53   A0A2A4IRY6   A0A194Q162   A0A1E1WAY4   A0A194QRX4   + More
A0A2A4IUG4   D6WWC1   A0A1W4WUX5   J3JVI2   N6T8N0   A0A1B6CC81   A0A1Y1KQ34   A0A1Q3G3X5   A0A182TJR5   A0A1Q3G3Y3   A0A1B6GU10   Q16SP5   A0A182IT39   A0A2J7RBT0   A0A182VMB4   A0A1S3DGU2   A0A067R3J3   A0A2J7RBV1   S4P546   A0A0P5EYT8   A0A0N8EL25   A0A0P6AKA4   A0A0P5KZV9   A0A0P5N5V9   A0A0K8TTE3   A0A224XDY7   A0A1B0DEN4   A0A1B0CCZ8   A0A2R7WD42   U4UFB2   A0A026X354   A0A226E3Y9   E0VUS2   A0A087ZR38   V9IFW2   A0A2A3E9H7  

Pubmed

19121390    26354079    18362917    19820115    22516182    23537049    + More
28004739    17510324    24845553    23622113    26369729    24508170    30249741    20566863   

EMBL

BABH01028339    ODYU01007234    SOQ49836.1    NWSH01008555    PCG62501.1    KQ459580    + More
KPI99322.1    GDQN01006902    JAT84152.1    KQ461196    KPJ06291.1    NWSH01007858    PCG62780.1    KQ971361    EFA08689.1    BT127250    AEE62212.1    APGK01040131    KB740975    ENN76574.1    GEDC01026235    GEDC01017454    JAS11063.1    JAS19844.1    GEZM01076952    JAV63522.1    GFDL01000545    JAV34500.1    GFDL01000532    JAV34513.1    GECZ01031530    GECZ01003868    JAS38239.1    JAS65901.1    CH477670    EAT37474.1    NEVH01005891    PNF38289.1    KK853018    KDR12434.1    PNF38288.1    GAIX01005719    JAA86841.1    GDIQ01270274    JAJ81450.1    GDIQ01016268    JAN78469.1    GDIP01028108    JAM75607.1    GDIQ01182022    JAK69703.1    GDIQ01146889    JAL04837.1    GDAI01000398    JAI17205.1    GFTR01005740    JAW10686.1    AJVK01005698    AJVK01005699    AJVK01005700    AJWK01007271    KK854571    PTY16980.1    KB632267    ERL91023.1    KK107020    QOIP01000006    EZA62528.1    RLU21217.1    LNIX01000007    OXA51621.1    DS235793    EEB17128.1    JR045371    AEY59965.1    KZ288344    PBC27711.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000007266    UP000192223    + More
UP000019118    UP000075902    UP000008820    UP000075880    UP000235965    UP000075903    UP000079169    UP000027135    UP000092462    UP000092461    UP000030742    UP000053097    UP000279307    UP000198287    UP000009046    UP000005203    UP000242457   

PRIDE

H9J6X8   

Pfam

PF03839   Sec62

Interpro

IPR004728   Sec62        + More
IPR036388   WH-like_DNA-bd_sf       
IPR000591   DEP_dom       

Gene 3D

1.10.10.10    

ProteinModelPortal

H9J6X8   A0A2H1WA53   A0A2A4IRY6   A0A194Q162   A0A1E1WAY4   A0A194QRX4   + More
A0A2A4IUG4   D6WWC1   A0A1W4WUX5   J3JVI2   N6T8N0   A0A1B6CC81   A0A1Y1KQ34   A0A1Q3G3X5   A0A182TJR5   A0A1Q3G3Y3   A0A1B6GU10   Q16SP5   A0A182IT39   A0A2J7RBT0   A0A182VMB4   A0A1S3DGU2   A0A067R3J3   A0A2J7RBV1   S4P546   A0A0P5EYT8   A0A0N8EL25   A0A0P6AKA4   A0A0P5KZV9   A0A0P5N5V9   A0A0K8TTE3   A0A224XDY7   A0A1B0DEN4   A0A1B0CCZ8   A0A2R7WD42   U4UFB2   A0A026X354   A0A226E3Y9   E0VUS2   A0A087ZR38   V9IFW2   A0A2A3E9H7  

KEGG

101746557    K12275 translocation protein SEC62 | (RefSeq) translocation protein SEC62

PATHWAY

03060    Protein export - Bombyx mori (domestic silkworm)
04141    Protein processing in endoplasmic reticulum - Bombyx mori (domestic silkworm)

GO

GO:0015031   GO:0030176   GO:0031204   GO:0005783   GO:0016020   GO:0035556   GO:0008565   GO:0016021   GO:0008270   GO:0004672   GO:0005515   GO:0004674   GO:0009058   GO:0016742   GO:0003824  

PANTHER

PTHR12443  

Length:

372

Number of predicted TMHs:

2

Exp number of AAs in TMHs:

51.17675

Exp number, first 60 AAs:

0.00374

Total prob of N-in:

0.98688

inside

1  -  179

TMhelix

180  -  202

outside

203  -  216

TMhelix

217  -  239

inside

240  -  372

 

 

Pi

35.511174

Theta

29.959682

Tajima's D

-0.644487

CLR

11.09735

CSRT

0.214339283035848

Interpretation

Uncertain