SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04337  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA005267
Annotation
PREDICTED:_COP9_signalosome_complex_subunit_7b_[Papilio_machaon]
Location in the cell
Cytoplasmic   Reliability : 2.523
 

Sequence

CDS
ATGAATCCGATGTCAATGGACCGAGATGAACCTTCCTCATTGTTATCATTTTCCTCCAATCACCCTCTAGAACAGTTTGTCCTTTTAGCAAAGGGAGCTAAAGGTTCTGCGTGCGCTGAACTCATCAAACAGGTTCTGGAGGCTCCAGGAGTGCATGTTTTCGGCGAGCTATTAGAGATGCCAAATATTAAAGAGCTGGAGAGTGGACCTTATGCAACTCATTTAAAAACTCTTAATTTGTTTGCCTATGGCACATATAAGGACTACATTGAGAACAAATCGGACTATTTAGAATTAACCACAGTCCAGTGCAAGAAATTACAGCATCTGACCATTGCAACACTTGCAACACAAGAGAAATGTATCCCTTACAGTGTGTTACTTGAGGAATTGGATATTAAAAATGTTAGAGATTTAGAAGATCTTATCATTGAAGCTATTTATGCAGACATAATTCACGGCAAGTTGGACCAGGAATGTAAACGTGTGGAAGTGGACGTGGCCCTTGGCAGAGATGCGCGGCTTGAAGATGCAGCTTCCATTGCTGATGTCCTGGCCGACTGGTGCAATGCTTGTGAAGCAGTACTCAATTCTGTAGATCAACACATACAGAGAGCTAATCATCAGAAACAGAAGGCTATCAGACATCAGCAGGGTATAGAACAGAAGATTTTATACATAAAGAAGACGTTGAAGACTCAAGCAGAGAATGATGAGTCAGCGTCAGGTGCCAATGCCGAGCCTCACTCAGCACCCAAAAAGAATTCGAGCAAAAGCAAGACTGCACGTAACTCTGCCAAATTCTGGCAGAAGAGCACATAA
Protein
MNPMSMDRDEPSSLLSFSSNHPLEQFVLLAKGAKGSACAELIKQVLEAPGVHVFGELLEMPNIKELESGPYATHLKTLNLFAYGTYKDYIENKSDYLELTTVQCKKLQHLTIATLATQEKCIPYSVLLEELDIKNVRDLEDLIIEAIYADIIHGKLDQECKRVEVDVALGRDARLEDAASIADVLADWCNACEAVLNSVDQHIQRANHQKQKAIRHQQGIEQKILYIKKTLKTQAENDESASGANAEPHSAPKKNSSKSKTARNSAKFWQKST

Summary

EMBL
BABH01028302    GDQN01009700    JAT81354.1    KQ460211    KPJ16529.1    KQ459302    + More
KPJ01843.1    GAIX01014223    JAA78337.1    AGBW02011182    OWR47090.1    JTDY01003916    KOB68829.1    NEVH01011877    PNF31471.1    DS235870    EEB19483.1    KK853042    KDR12141.1    GDKW01001707    JAI54888.1    ACPB03009329    GAHY01001531    JAA75979.1    GECL01000859    JAP05265.1    GBBI01000651    JAC18061.1    GBGD01002552    JAC86337.1    KQ982691    KYQ52222.1    KQ980765    KYN13373.1    GECZ01020004    GECZ01005070    JAS49765.1    JAS64699.1    KQ976749    KYN08784.1    KK854211    PTY13150.1    GL451914    EFN78266.1    GEZM01055035    JAV73220.1    KQ981272    KYN43848.1    GL442888    EFN62786.1    ADTU01006102    KQ414661    KOC65556.1    KQ435036    KZC14081.1    KQ976641    KYM78800.1    GEDC01017901    GEDC01011931    JAS19397.1    JAS25367.1    LBMM01001170    KMQ96787.1    AXCN02001025    JR044308    AEY59866.1    APCN01003308    KZ288317    PBC28295.1    NNAY01000057    OXU31436.1    KK107623    QOIP01000013    EZA48426.1    RLU15492.1    KQ435855    KOX70663.1    DS233029    EDS27599.1    GFDL01009995    JAV25050.1    DS231920    EDS26386.1    GL762047    EFZ22369.1    AAAB01008986    EAA00161.4    GEZM01055034    JAV73221.1    GGFM01004209    MBW24960.1    GGFJ01008192    MBW57333.1    ADMH02001278    ETN63248.1    CH477198    EAT48302.1    GGFM01004217    MBW24968.1    GGFJ01008174    MBW57315.1    GGFK01007854    MBW41175.1    DQ440395    ABF18428.1    EAT48300.1    EAT48301.1    AXCM01003008    GFDL01010006    JAV25039.1    GDHC01005950    JAQ12679.1    GAPW01003156    JAC10442.1    GBHO01044473    GBHO01044472    GBHO01044470    GBHO01039225    GBHO01039222    GBHO01039220    GBHO01035748    GBHO01018589    GBHO01018588    GBHO01018587    GBHO01018585    GBHO01007843    GBRD01016131    GBRD01016130    GBRD01016129    GBRD01016128    GDHC01016383    JAF99130.1    JAF99131.1    JAF99133.1    JAG04379.1    JAG04382.1    JAG04384.1    JAG07856.1    JAG25015.1    JAG25016.1    JAG25017.1    JAG25019.1    JAG35761.1    JAG49695.1    JAQ02246.1    KQ971367    KYB25639.1    GANO01002695    JAB57176.1    GBHO01044474    GBHO01044471    GBHO01039229    GBHO01039228    GBHO01039226    GBHO01039224    GBHO01039223    GBHO01020453    GBHO01018592    GBHO01018591    GBHO01018590    GBHO01018584    JAF99129.1    JAF99132.1    JAG04375.1    JAG04376.1    JAG04378.1    JAG04380.1    JAG04381.1    JAG23151.1    JAG25012.1    JAG25013.1    JAG25014.1    JAG25020.1    JXUM01077333    KQ563002    KXJ74661.1    GFDF01003432    JAV10652.1    APGK01059021    KB741292    KB631582    ENN70376.1    ERL84495.1    AMQN01007169    KB300141    ELU07097.1    ATLV01023950    KE525347    KFB50156.1    GBYB01007782    GBYB01014545    JAG77549.1    JAG84312.1    GBYB01006572    JAG76339.1    GDAI01002427    JAI15176.1    BT126677    AEE61640.1    KB201037    ESO99539.1    GL732525    EFX88835.1    NEDP02000690    OWF55382.1    AJVK01019119    KM396884    AIY25505.1    LRGB01002505    KZS07281.1    GDIQ01190779    GDIP01093602    JAK60946.1    JAM10113.1    GDIP01254330    JAI69071.1    GDIQ01265647    JAJ86077.1    GDIQ01048080    JAN46657.1   
Pfam
PF18392   CSN7a_helixI        + More
PF01399   PCI
Interpro
IPR041481   CSN7_helixI        + More
IPR027530   Csn7b       
IPR000717   PCI_dom       
IPR037757   COPS7A       
IPR002557   Chitin-bd_dom       
PDB
4WSN     E-value=5.04535e-57,     Score=558

Ontologies

Topology

Length:
273
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00058
Exp number, first 60 AAs:
0.00018
Total prob of N-in:
0.06021
outside
1  -  273
 
 

Population Genetic Test Statistics

Pi
223.779697
Theta
183.181692
Tajima's D
1.131131
CLR
0.076427
CSRT
0.693415329233538
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
26280517 TPSAAITEAFR 100.00 9e-08
25044914 TPWIDGR 100.00 9e-08
28467696 TPWIDGR 100.00 9e-08
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