SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04329
Pre Gene Modal
BGIBMGA014102
Annotation
Uncharacterized_protein_OBRU01_07106_[Operophtera_brumata]
Location in the cell
Nuclear   Reliability : 2.654
 

Sequence

CDS
ATGTGCGGGATCCGTGAAGCTGTGCAAGATGGCTCAAAGGACAGAGTGATTGACGCAATAGTTGATCTCCACATAGAGTGGTTACGTGTTATTGATGAAATTGAAGTATTCAAAAACGATATGCAGAATATTTATCCGAAAGACATTTTGCAATGTGTATCATTTACAATTGATGCCATGTCGAATCGCTTGAAGTACTTTAAAAAGTACACTGAATCTAATCGCGCATCTTTATCCAATATGGACCAAGCTGACCTTATTTCTGAAATAGAAATAGTAGAAGCCATGCATAAAGAAACCAATGAAGCCCTTTTAGAAAAGAAAATTTGTTACGGAAACTTCACAGGAGTTGAAGAATTTCAAATTAAATTGCGAGAATCGACCGATGAACTATTAAATTGGGTAGATAAAATTTATGATGGATTTGCCATCGAACTGAGTAACCATTTAAATTTCAACGTACCCCACTTAGTCAGTGATTTAACGAAATCTTTGCAGCAAATTATAGATGACATTCAAACTTGTAGAGTACCGTCAGCTCAAAAGCTTTTAGATGAATTAAAAGAAAAAGGAAAAGAGCTAGCCTCAATGATACGTTGTACCGCTGGTCATGATGTAGAGATAAGTAAAATTATCGAAAAAATCCAAGTGCTAGATGAACGTATAAAACGACTAGAAAACGAACCAACATCTGCAGCGGTTATGGCATTGACGCATAAAAAAGAATATTTGGTGAAACGATTGTCATCGTTGGAAAATTTGAAAACGACTCTAAAAACTCTGAACCGCAGCGCAGAAATATCAATAGAAAACGTTGATGAGGAAGAATTGTGTATTTGTGAAGATTTTTATAGATTACGGATTTTTAATCATGCCTTACCTCAAACAGAGAGAGAAAGATTAGTCACTGAATTATGCTATTTCTGGGATGTGGCAGTTTTTGGAGAACACACGCGTAAATCAATTATTTCAATTTTGAGCGCTGCCGATGTGAAAGAAGAATTTACTGATGAACTAGGCAATTATTACGTTGATGAATATAGTCGAAAAATATACAAAATCTCCGGAGATTCAACACTTTATCAACCAAATGAAAACAATGAATTAGTTCCCTTATCGGATAATAAGGAACATGTATTTTTTTATGATGAATGTGGGCGATATTTTTTAGATCCTCAAACGAGAGAAAGAATTTACAAGGCTCATGAGAATGCCAGTGAATATATGATGGATTCTACAGGCGTTTTACTCAAAACCAAAGAAGAAAGAGATGGAGTTACATATTATTATGATACTTGTGGACGTTATTATGTTAACGACGACGGTAAGCAAATTTATCGAGACGAAGATGCTATGAGCGAATATGAAAATGATGGTCTCGGAAATTTGGTTCGCATTCGAAGTCAAGCAGAGATGTTTACTTTGTGCCCTGAAGATGCACATATCACAGAGGATTCAAAGTATTTAAAACAAACCGTGGGCCATGCTTTGCGTGTTTGTATTGCGAACGTTGTCTCACTTCAACCGGCTGATCCCATTAAATGCCTATCATCCTTACTTATAAATTACAGAAAGAATGTTGAAATGAGGGAAACTCAAGCCAGAGAAAACGAGGAATTAAATATCGAAAGGGAAATTTATATAGCTGAACAAAAAGCAGCAGCAGAAAGAGCCGCTGCCGAAGCTGCACTATTGACACGAGGCGCTAGCGAAGCAAGCTACGATTCTAATTTACTAAACTACACGGCCCTGAATCCCACCGATGCATCTCGTGACACGAGCACAAATTAG
Protein
MCGIREAVQDGSKDRVIDAIVDLHIEWLRVIDEIEVFKNDMQNIYPKDILQCVSFTIDAMSNRLKYFKKYTESNRASLSNMDQADLISEIEIVEAMHKETNEALLEKKICYGNFTGVEEFQIKLRESTDELLNWVDKIYDGFAIELSNHLNFNVPHLVSDLTKSLQQIIDDIQTCRVPSAQKLLDELKEKGKELASMIRCTAGHDVEISKIIEKIQVLDERIKRLENEPTSAAVMALTHKKEYLVKRLSSLENLKTTLKTLNRSAEISIENVDEEELCICEDFYRLRIFNHALPQTERERLVTELCYFWDVAVFGEHTRKSIISILSAADVKEEFTDELGNYYVDEYSRKIYKISGDSTLYQPNENNELVPLSDNKEHVFFYDECGRYFLDPQTRERIYKAHENASEYMMDSTGVLLKTKEERDGVTYYYDTCGRYYVNDDGKQIYRDEDAMSEYENDGLGNLVRIRSQAEMFTLCPEDAHITEDSKYLKQTVGHALRVCIANVVSLQPADPIKCLSSLLINYRKNVEMRETQARENEELNIEREIYIAEQKAAAERAAAEAALLTRGASEASYDSNLLNYTALNPTDASRDTSTN

Summary

Pfam
PF05186   Dpy-30        + More
PF02205   WH2
Interpro
IPR037856   Sdc1/DPY30        + More
IPR007858   Dpy-30_motif       
IPR003124   WH2_dom       
PDB
4N7Z     E-value=0.0425931,     Score=88

Ontologies

Topology

Length:
596
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00124
Exp number, first 60 AAs:
0.00034
Total prob of N-in:
0.00140
outside
1  -  596
 
 

Population Genetic Test Statistics

Pi
118.482644
Theta
147.147649
Tajima's D
-0.414909
CLR
0.02148
CSRT
0.259987000649967
Interpretation
Uncertain
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