SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04310
Pre Gene Modal
BGIBMGA014126
Annotation
PREDICTED:_RING_finger_protein_nhl-1_isoform_X2_[Papilio_xuthus]
Location
Bomo_Chr8(+):2622535-2652035      View in EpiBrowser
Location in the cell
Nuclear   Reliability : 4.323
 

Sequence

CDS
ATGGAGCAGTTTGAATCGCTGCTGACTTGCTGCGTGTGTTTGGACCGGTACAGGAACCCTAAGTTGCTGCCATGCCAGCACAGCTTCTGTATGGAGCCCTGCATGGACGGCCTAGTCGACTACGTTAGACGACAGGTCAAATGTCCAGAATGCCGTGCAGAGCATCGAATTCCCTATCAGGGAGTTCAAGGGTTCCCCACAAATGTAACGCTCCAAAGATTTTTGGAGCTCCACGCTCAAATTGCTGGTGAACTTCCAGACCCTACTGCTGGGCAAATTATGGAAAGGTGCAATGTTTGCTCAGAAAAAGCGTACTGCGCTTTATGTGCACATTGTGACAAAAAAGTATGTGATGACTGCAAATCTGCTCACATGGAGGTATTACGTCGCGAAATTGCAAGAATAAATAATCAAGTCCGTCGTGGCATGAACAGACTACAAGATATTTTGGGTGTTGTCGAACGCAACACGACGAATCTCCAAACAAACTGCGCAGCAGTTGCGGGTGAAGTCGACGAAATTCACAAAAGGCTCGCCAAAGCTCTGAAAGATAGAACCGACTTCTTGCGCACTGAAGTAGATCGGTATCTAGCAACTGAGCTTAGAAATCTAACTCATCTCAAAGATAATTTAGAATTAGAATTAAGTAACATACAAAGTAATTGTGATCTCGCCGAAAAGCATATGAACGATGACACTGAATGGGAAGACACAGAACTTATGGACACGAAGGAAATTTTCCTAAAAACTGTGGAATTCTTAAGGAACTTCGATTACGAAGCTGGCGATTACAATCGTAGAGTGCGATTCATTATGACGCACGACCCCAACCAACTTGTAATGCATGTCGCTAGCTATGGAGAATTGAATATAACTCAACCCAACGCTTATTCTGGGGGTCTACAGCCAAGTCAAGGTCTAACTAGATCGAAGAGTGACCATCGCTTGGCGACGCAATTTAGACAGCAGGAAGAATCCAAGAATTACTACGAAAACGATGAACCGATCCTTGGCGGACGTAAGTTTGGAGAACGTAGACCGCCACCGCCTGAAAGACATACCCGAGACTACAATGTCACGGATGACTATAGCGGATATGAGTCTGAGCACCGACCCCGTAGGTTCCGCTCACGTTTTGTTAGAAGTCACCAACAAGACAACGATTCTGATACAGAACAAAGTATTCGTTCAGCTAAAACAGAAAAACAAGAGAAGGAAAAAGAGAAAGTTGTAGATACAGAAGATGCTACCAGAGGACCTCTAAGCGGCATTTTCAGGCTAAGCGATTGTCCACGAGTAATGCAACGAATTATGGATGCAGAAAGTGGAAAGAAGAAAGAGAAGAAAGAACCTCCGCCACCACCTAAGCCCGTAGTTCAACCGACACCGCAACCTCGCCGTCCTCCACCTGCTCAAAGGCAACAAAGTGAGGATGATGAAATAACACGCCTTAAAAGACAAAACAAAGGCGCAGCTTCATCACAAGAACCAGATCGTCCAGCCCCAAGACCTGTTGAAGAAGAAAGAACTTCGATAGCACGCAAACCACCTACACCAGCTCGGGAGGCGTCAAGCGATGGTGAATCTGATGAATCAGTCGGATCTTTACAACGTACTCAACAACGTAAAGCTCCACCTCCAGTACAAAAACCCGCAGCGACCGGGAGAAGACCATCCGCGGATGCTCCTACACCACATAGACCGGCTGCAAGAGCACCTAGCACAGAATCAAGCGCATCTACAGAAAGTTCTGGCTCGGCGGTTAAGCATACAGGAAACGAGAGAACTGCACCGGTTACAACCAACGGTACAGCTGGAGGTGCGCAACGGGTACAGAGCCGCTTTGTTGGCTCGCAGAGACCTACGCCCGCTCCGGCTCCCGCCGAGCCGGCGCACGATGAAGATTCAGATACGAGTTCCGAAGAGGAAACAGATTCGTCAGAGGAGAGTGAAGAGGAGCCTGCACCTCAAAGAAAGCCCGAGAGCCAGGCGATGGCTCGTAGTGACATCGGCCCTTTACTTGCGCGTAGTTCAAATGCTCGCAGTGATGCTCATGATAACAAATCCAAAGATCCTCCACCTTCACAAACTCGGTACCGATCAAGGCAACCATCTCAAACTGAAGAGGAGCCCGCACCACGATACGGTGCCGGTTCTTCTTACAACAATCGTTATGGCAGCAAGCCAAGAGAAGAAGAAACGACGTCATCCATAGATGATGATTCTAAATATCCAACGGCCAGATCGAGATATCTCGCCTTAAAAGAACGGCGAAACCGTCTCGCAAGAAGTAAAAGTAGTCACACCGGATTCGGTGCGGGAGACGACGATGATCAGGACGATCCTGTGTCTCCAACCACGGCATCGCCATCGGCGTATTTGGCGGCTCGGTACGGCTCCGGGACCGGAGGGTCGGAGTTGTCTCGTAGCAGGTCATCTCACGCGCTGAAGTCTAGAGAAAGCTCGCCAGAACGACCACCGACTGGCGAGAAAGATGGAGCAGCACTCAGCTCGTGGGCACGGTACTTGAAAAACAAGTACGGCTCCCGCGGTAAAGAACGAGACACGAGTGGCACGTCCTCGAGCGCGTCGCGTCGTCTGTCTCTCGGGCTGCCTTTGCGCTCGGCAAACGAGCTTGCCAGTTCTGATGACGATTCAAAAAACGCGGCAGGCTCCCCCATCTCCCCTACGGCGGCTACAGCAGCGGTAGCAGGTTTCGCAGCAGCAGGTTCCTCCCCTAGGAGCCAGTATCTGCAGAAACGCCGATTACAGTTCAGCGTGGGGAGTCGGGGGAGCGAACCTGGTTGTTTCACATGGCCTCGTGGTATCGCTGTAGGTCCAGATAATACTATGGTCGTGGCCGATTCATCAAATCACAGAGTGCAGGTGTTCGACTCTAATGGAATATTCATCAAGGAGTTCGGTCAGTATGGAAGCGGCGAAGGCGAGTTTGACTGCTTAGCAGGAGTTGCTGTTAACCGCATCGGGCAGTACATCATAGCTGATAGATACAACCATCGCATACAGGTTTTTGACCCTCAAGGTCGCTTCCTAAGAGCCTTCGGGAGCCAAGGTACCGGAGACGGCAAGTTCAACTACCCATGGGGCATCACCACTGACGCCCTCGGATTCATATACGTGTGTGACAAGGAAAACCATAGAGTGCAGGTGTTCCAATCCGACGGCACCTTCGTGGGTAAATTTGGTTCCTTCGGGGCCAAGCTTGGTCAACTAGAACATCCTCATTACATTGCGGTTTCCAGCACCAACCGAGTTCTGGTCTCAGACTCGAACAACCACAGGATCCAGGTCTTCGATGTAAACGGTAGAGTTCTGTCTTCGTTCGGCGAAGAAGGGTCCGAAGATGGCCAGTTTAAGTTCCCGAGAGGTGTAGCAGTGGACGACCAAGGCTACATCGTAGTGGCTGATTCCGGTAACAACAGGATCCAGATCTTCCATCCGGATGGAACCTTCCTCAGGGCGTTTGGCTCTTGGGGCTCCGGAGACGGGGAATTTAAGGGATTAGAGGGAATCGCTGTCATGACCGGTGGAAATATCATCGTATGTGATCGGGAGAATCATAGGGTGCAAGTGTTTTAA
Protein
MEQFESLLTCCVCLDRYRNPKLLPCQHSFCMEPCMDGLVDYVRRQVKCPECRAEHRIPYQGVQGFPTNVTLQRFLELHAQIAGELPDPTAGQIMERCNVCSEKAYCALCAHCDKKVCDDCKSAHMEVLRREIARINNQVRRGMNRLQDILGVVERNTTNLQTNCAAVAGEVDEIHKRLAKALKDRTDFLRTEVDRYLATELRNLTHLKDNLELELSNIQSNCDLAEKHMNDDTEWEDTELMDTKEIFLKTVEFLRNFDYEAGDYNRRVRFIMTHDPNQLVMHVASYGELNITQPNAYSGGLQPSQGLTRSKSDHRLATQFRQQEESKNYYENDEPILGGRKFGERRPPPPERHTRDYNVTDDYSGYESEHRPRRFRSRFVRSHQQDNDSDTEQSIRSAKTEKQEKEKEKVVDTEDATRGPLSGIFRLSDCPRVMQRIMDAESGKKKEKKEPPPPPKPVVQPTPQPRRPPPAQRQQSEDDEITRLKRQNKGAASSQEPDRPAPRPVEEERTSIARKPPTPAREASSDGESDESVGSLQRTQQRKAPPPVQKPAATGRRPSADAPTPHRPAARAPSTESSASTESSGSAVKHTGNERTAPVTTNGTAGGAQRVQSRFVGSQRPTPAPAPAEPAHDEDSDTSSEEETDSSEESEEEPAPQRKPESQAMARSDIGPLLARSSNARSDAHDNKSKDPPPSQTRYRSRQPSQTEEEPAPRYGAGSSYNNRYGSKPREEETTSSIDDDSKYPTARSRYLALKERRNRLARSKSSHTGFGAGDDDDQDDPVSPTTASPSAYLAARYGSGTGGSELSRSRSSHALKSRESSPERPPTGEKDGAALSSWARYLKNKYGSRGKERDTSGTSSSASRRLSLGLPLRSANELASSDDDSKNAAGSPISPTAATAAVAGFAAAGSSPRSQYLQKRRLQFSVGSRGSEPGCFTWPRGIAVGPDNTMVVADSSNHRVQVFDSNGIFIKEFGQYGSGEGEFDCLAGVAVNRIGQYIIADRYNHRIQVFDPQGRFLRAFGSQGTGDGKFNYPWGITTDALGFIYVCDKENHRVQVFQSDGTFVGKFGSFGAKLGQLEHPHYIAVSSTNRVLVSDSNNHRIQVFDVNGRVLSSFGEEGSEDGQFKFPRGVAVDDQGYIVVADSGNNRIQIFHPDGTFLRAFGSWGSGDGEFKGLEGIAVMTGGNIIVCDRENHRVQVF

Summary

Uniprot
H9JX61   A0A3S2NGI9   A0A194Q7I3   A0A212F9Y4   A0A194RKQ6   A0A2H1V3X4   + More
A0A0L7KWQ4   A0A139WBE6  
Pubmed
19121390    26354079    22118469    26227816    18362917    19820115    + More
EMBL
BABH01031993    RSAL01000048    RVE50474.1    KQ459580    KPI99365.1    AGBW02009543    + More
OWR50547.1    KQ460211    KPJ16556.1    ODYU01000379    SOQ35062.1    JTDY01004859    KOB67668.1    KQ971372    KYB25247.1   
Proteomes
UP000005204    UP000283053    UP000053268    UP000007151    UP000053240    UP000037510    + More
UP000007266   
PRIDE
H9JX61   
Pfam
PF01436   NHL        + More
PF00097   zf-C3HC4
Interpro
IPR013017   NHL_repeat_subgr        + More
IPR001841   Znf_RING       
IPR000315   Znf_B-box       
IPR001258   NHL_repeat       
IPR011042   6-blade_b-propeller_TolB-like       
IPR018957   Znf_C3HC4_RING-type       
IPR013083   Znf_RING/FYVE/PHD       
Gene 3D
2.120.10.30     3.30.40.10    
ProteinModelPortal
H9JX61   A0A3S2NGI9   A0A194Q7I3   A0A212F9Y4   A0A194RKQ6   A0A2H1V3X4   + More
A0A0L7KWQ4   A0A139WBE6  
PDB
6D69     E-value=3.32082e-148,     Score=1351

Ontologies

KEGG
101745812    K12035 tripartite motif-containing protein 71 [EC:2.3.2.27] | (RefSeq) RING finger protein nhl-1
GO
GO:0008270   GO:0046872   GO:0000209   GO:0043161   GO:0061630   GO:0005515   GO:0005622   GO:0009113   GO:0005524   GO:0009058   GO:0016742   GO:0003824  

Topology

Length:
1199
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.01873
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00000
outside
1  -  1199
 
 

Population Genetic Test Statistics

Pi
282.235662
Theta
178.415331
Tajima's D
1.988135
CLR
0.244536
CSRT
0.878406079696015
Interpretation
Uncertain
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