Gene

KWMTBOMO04309

Annotation

PREDICTED:_RNA-directed_DNA_polymerase_from_mobile_element_jockey-like_[Plutella_xylostella]

Location

Bomo_Chr8(-):2605926-2607824      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 2.828

CDS

ATGTCCGTAAATAGATACGCTAGAATAGGAATATGTTCGCAAGTACAGCTAGATTTAATAGAAATAGAGATAGTCACGCTGGCCGAGTGCGTGTGGGCGACCATAAATAGGGGGCCTACCTCGCTGCGAATTCCCGGCAAGGACAGGAGAAAGCCCTCCAGTTACCGACCGATTACCTTGCTCTCGCACGTGGGAAAGTTGTTCGAGCGGCTGCTCCTGAGGAGAATATCGCCGTATATTCTCCTCAGGCCGGAGCAATTCGGCTTTAGAAGCGGCCACTCGACGACTCTGCAACTGACCCGTGTCCTGCATCACTTGGCAGACCGGCGAAACTCGGGCCAATACACGGTCGCGGTCCTTCTCGATATCGAGAAGGCCTTCGACCGTGTGTGGCACGAGGGGCTGGTCCACAAGCTGCGGGACGCGGGCCTACCGCACGCTCACGTGCGACTGCTCGGGTCGTATCTGGAGGGCAGAACCTTCTTTGTCGCGGTCGAGGGCGCACGGTCTTCCGTGCGTCCCATTACGGCCGGGGTTCCCCAGGGTAGTGTCCTATCACCTATCCTATACGCCCTCTACACCAACGACATCCCCACCCTGGAGGGTCACCTTCGGGCGTGGGAGGAGGACGTGAAGTTGGCCTTGTTCGCTGACGACTCGGCCTACTTCTCGTCCTCTCCGTTCCCCTCTGCAGCCATTATGAGGATGCAGAGGCTTTTGGATTTACTGCCCCAGTGGCTGGACCGTTGGAGAGTCGCGGTCAATGTGGGAAAGACCGCGGCCTTACTCTACGGTCCGGTCCGTATCAGAGTCGTCCCAAAGAAACTCAGCCTCCGAGGTGTGAATGTCGAGTTCAGGACCACGGTCCGGTATCTCGGATGCGACATCGACCGCTCCTTGAGCATGGTCGCGCACGTCAACCGAGTCATCGGTCAGACTCGCGCGGCCAGGTTCTTGTTGCGGCCGGTGTTTGCGTCCGGGCTTCCGACCAGGACCAAACTCGCCATTTACAAGACATACGTCCGTTCCCGCCTCACATACGCTGCTGTGGCCTGGTATCACCTGTTGTCGCCGTCCCAGCGATCTAGGTTGCAGGCCCAGCAGAGTCTTTCCCTCCGCATTATCGTCGGGGCCGGGCAGTACGTCAGAAATGACGTTATTGCCCGGGACCTAGGTGTGGAGTCGCTCGTGGAGTTTGTGACTAGGCTCGCCCGTAATATGTACGAGCGAGCCGAAAACGGGCCCCATGAGCATCTCCACAACATAGCCCCGCTGCACGCCAGACCACCGGATGGTACGGCGTTGCCGCGGGAGCTATTGGTACCCCCGACGATCGTTCGGAGATAA

Protein

MSVNRYARIGICSQVQLDLIEIEIVTLAECVWATINRGPTSLRIPGKDRRKPSSYRPITLLSHVGKLFERLLLRRISPYILLRPEQFGFRSGHSTTLQLTRVLHHLADRRNSGQYTVAVLLDIEKAFDRVWHEGLVHKLRDAGLPHAHVRLLGSYLEGRTFFVAVEGARSSVRPITAGVPQGSVLSPILYALYTNDIPTLEGHLRAWEEDVKLALFADDSAYFSSSPFPSAAIMRMQRLLDLLPQWLDRWRVAVNVGKTAALLYGPVRIRVVPKKLSLRGVNVEFRTTVRYLGCDIDRSLSMVAHVNRVIGQTRAARFLLRPVFASGLPTRTKLAIYKTYVRSRLTYAAVAWYHLLSPSQRSRLQAQQSLSLRIIVGAGQYVRNDVIARDLGVESLVEFVTRLARNMYERAENGPHEHLHNIAPLHARPPDGTALPRELLVPPTIVRR

Uniprot

A0A3S2NJ07   A0A2A4JQF8   J9LF86   X1X928   A0A2S2NJB5   J9KCZ4   + More
X1XGU0   X1WNI2   X1WN18   J9LC21   X1WZH0   A0A1Y1KUU7   A0A2S2RAN7   J9LFC9   J9KVX5   J9JS95   J9KPF1   J9L876   J9LR29   A0A2J7Q5G9   A0A2J7QEZ4   A0A2J7RS77   A0A087U2S8   A0A2J7RIW7   A0A2J7RB54   A0A2J7PMP6   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7RM10   A0A2J7PMP9   A0A2J7Q059   A0A2J7RPU2   A0A2J7Q0Q6   A0A2J7QUJ9   Q9XXW0   A0A2J7R6U1   A0A2J7QFL0   A0A2J7R2E1   A0A2J7Q1Y9   A0A2J7Q6J2   A0A2J7QR37   A0A2J7RKP3   A0A2J7QY69   A0A2J7PBY3   A0A2J7PDS9   A0A2J7PU96   A0A2S2Q823   Q9BPQ0   A0A2J7Q2R1   Q93137   A0A087T1W0   A0A182GA28   A0A087TV70   A0A0N0PA09   A0A139WA11   A0A139W8G9   A0A0L0CBP5   V5GNJ2   A0A087T2X4   A0A0N1PFV1   J9KKL3   A0A087T2T6   A0A087UCW3   X1WMU5   A0A1Y1NA23   A0A2S2QV02   A0A087U3E2   X1WWC4   A0A087TKT6   A0A224XF24   A0A087TMJ9   A0A1Q3G5F7   A0A1Q3G5J4   D7GYA5   X1X5E5   A0A2J7RL12   A0A2J7RS81   A0A2H8TV33   A0A0A9Z4E6   A0A0A9YN51   A0A023EZE6   A0A2A4K8E7   A0A2J7PQB5   K9N5J5   A0A2J7QTW2   A0A2J7Q627   A0A087V0P8   A0A2S2PX53   X1WSV5   X1XFE3   A0A2A4K918   A0A2S2QJM7   A0A0A9Y7Q6  

Pubmed

28004739    10333566    26483478    26354079    18362917    19820115    + More
26108605    25401762    25474469    23652563   

EMBL

RSAL01000708    RVE41206.1    NWSH01000895    PCG73652.1    ABLF02017815    ABLF02066620    + More
GGMR01004661    MBY17280.1    ABLF02008463    ABLF02055645    ABLF02008153    ABLF02008462    ABLF02008464    ABLF02021177    ABLF02027367    ABLF02066338    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02034467    GEZM01074951    JAV64378.1    GGMS01017914    MBY87117.1    ABLF02023911    ABLF02010251    ABLF02035981    ABLF02028535    ABLF02028545    ABLF02041767    ABLF02033522    ABLF02025082    ABLF02039175    ABLF02041809    NEVH01017559    PNF23833.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01000280    PNF43672.1    KK117880    KFM71667.1    NEVH01003017    PNF40781.1    NEVH01005938    PNF38077.1    NEVH01023962    PNF17612.1    NEVH01007443    PNF35684.1    NEVH01018383    PNF23463.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01023961    PNF17613.1    NEVH01020071    PNF21969.1    NEVH01001355    PNF42855.1    NEVH01019964    PNF22161.1    NEVH01010546    PNF32261.1    AB018558    BAA76304.1    NEVH01006754    PNF36554.1    NEVH01014858    PNF27387.1    NEVH01007838    PNF34986.1    NEVH01019376    PNF22596.1    NEVH01017470    PNF24199.1    NEVH01011985    PNF31054.1    NEVH01002716    PNF41415.1    NEVH01009134    PNF33528.1    NEVH01027074    PNF13841.1    NEVH01026154    PNF14491.1    NEVH01021205    PNF19912.1    GGMS01004685    MBY73888.1    AB055391    BAB21761.1    NEVH01019080    PNF22876.1    U07847    AAA17752.1    KK113014    KFM59099.1    JXUM01155316    KQ572171    KXJ68070.1    KK116883    KFM69009.1    KQ459259    KPJ02068.1    KQ971729    KYB24751.1    KQ973342    KXZ75569.1    JRES01000644    KNC29657.1    GALX01005299    JAB63167.1    KK113147    KFM59463.1    KQ459265    KPJ02064.1    ABLF02029306    ABLF02029314    ABLF02060138    KK113137    KFM59425.1    KK119261    KFM75202.1    ABLF02014862    ABLF02014866    ABLF02061908    GEZM01008457    JAV94772.1    GGMS01012362    MBY81565.1    KK117974    KFM71881.1    ABLF02003961    ABLF02059872    KK115682    KFM65725.1    GFTR01008038    JAW08388.1    KK115908    KFM66338.1    GFDL01000004    JAV35041.1    GFDL01000006    JAV35039.1    KQ973363    EFA13335.2    ABLF02037507    ABLF02041173    ABLF02054117    NEVH01002704    PNF41489.1    NEVH01000269    PNF43694.1    GFXV01005866    MBW17671.1    GBHO01041571    GBHO01005400    GBHO01005396    JAG02033.1    JAG38204.1    JAG38208.1    GBHO01041572    GBHO01041570    GBHO01010553    JAG02032.1    JAG02034.1    JAG33051.1    GBBI01004571    JAC14141.1    NWSH01000032    PCG80497.1    NEVH01022639    PNF18527.1    KC165845    AFY12622.1    NEVH01011193    PNF32021.1    NEVH01017542    PNF24034.1    KL813758    KFM83187.1    GGMS01000737    MBY69940.1    ABLF02016494    ABLF02066976    ABLF02029291    PCG80496.1    GGMS01008766    MBY77969.1    GBHO01016496    JAG27108.1   

Proteomes

UP000283053    UP000218220    UP000007819    UP000235965    UP000054359    UP000069940    + More
UP000249989    UP000053268    UP000007266    UP000037069   

PRIDE

Q9XXW0    Q9BPQ0    Q93137    K9N5J5   

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF07530   PRE_C2HC
PF03372   Exo_endo_phos
PF07727   RVT_2
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR006579   Pre_C2HC_dom       
IPR036875   Znf_CCHC_sf       
IPR013103   RVT_2       
IPR018289   MULE_transposase_dom       

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756       

Gene 3D

3.60.10.10    

ProteinModelPortal

A0A3S2NJ07   A0A2A4JQF8   J9LF86   X1X928   A0A2S2NJB5   J9KCZ4   + More
X1XGU0   X1WNI2   X1WN18   J9LC21   X1WZH0   A0A1Y1KUU7   A0A2S2RAN7   J9LFC9   J9KVX5   J9JS95   J9KPF1   J9L876   J9LR29   A0A2J7Q5G9   A0A2J7QEZ4   A0A2J7RS77   A0A087U2S8   A0A2J7RIW7   A0A2J7RB54   A0A2J7PMP6   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7RM10   A0A2J7PMP9   A0A2J7Q059   A0A2J7RPU2   A0A2J7Q0Q6   A0A2J7QUJ9   Q9XXW0   A0A2J7R6U1   A0A2J7QFL0   A0A2J7R2E1   A0A2J7Q1Y9   A0A2J7Q6J2   A0A2J7QR37   A0A2J7RKP3   A0A2J7QY69   A0A2J7PBY3   A0A2J7PDS9   A0A2J7PU96   A0A2S2Q823   Q9BPQ0   A0A2J7Q2R1   Q93137   A0A087T1W0   A0A182GA28   A0A087TV70   A0A0N0PA09   A0A139WA11   A0A139W8G9   A0A0L0CBP5   V5GNJ2   A0A087T2X4   A0A0N1PFV1   J9KKL3   A0A087T2T6   A0A087UCW3   X1WMU5   A0A1Y1NA23   A0A2S2QV02   A0A087U3E2   X1WWC4   A0A087TKT6   A0A224XF24   A0A087TMJ9   A0A1Q3G5F7   A0A1Q3G5J4   D7GYA5   X1X5E5   A0A2J7RL12   A0A2J7RS81   A0A2H8TV33   A0A0A9Z4E6   A0A0A9YN51   A0A023EZE6   A0A2A4K8E7   A0A2J7PQB5   K9N5J5   A0A2J7QTW2   A0A2J7Q627   A0A087V0P8   A0A2S2PX53   X1WSV5   X1XFE3   A0A2A4K918   A0A2S2QJM7   A0A0A9Y7Q6  

PDB

6AR3     E-value=0.000545405,     Score=103

KEGG

105841867    no KO assigned | (RefSeq) uncharacterized LOC105841867

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676  

Length:

448

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.0738599999999999

Exp number, first 60 AAs:

0.0194

Total prob of N-in:

0.01939

outside

1  -  448

 

 

Pi

235.276511

Theta

175.651349

Tajima's D

1.075654

CLR

0.473237

CSRT

0.67871606419679

Interpretation

Uncertain