Gene

KWMTBOMO04301

Pre Gene Modal

BGIBMGA014122

Annotation

PREDICTED:_AP-2_complex_subunit_mu_[Bombyx_mori]

Location

Bomo_Chr8(+):2117700-2130954      View in EpiBrowser

Location in the cell

Cytoplasmic   Reliability : 1.944 Mitochondrial   Reliability : 1.505

CDS

ATGATCGGAGGCTTGTTCGTTTACAACCATAAAGGCGAGGTGTTGATCTCGAGAGTCTACCGAGATGATATTGGTCGTAATGCTGTGGACGCATTCAGAGTGAATGTGATCCATGCTCGCCAGCAGGTGCGATCACCTGTTACCAACATTGCACGCACATCTTTCTTCCATATCAAGCGTGCAAATATTTGGCTGGCAGCAGTCACAAAGCAAAATGTGAACGCGGCCATGGTATTTGAGTTCCTGTTGAAGATCATTGATGTGATGCAATCGTATTTTGGCAAGATTTCTGAAGAGAACATCAAGAATAACTTTGTTCTGATCTATGAGTTGCTTGATGAGATCTTGGACTTTGGTTACCCTCAGAATTCTGATACTGGGGTCCTGAAGACATTCATCACTCAGCAGGGCATCAAGTCTGCCTCCAAGGAGGAACAAGCCCAGATTACCTCACAAGTAACTGGTCAGATTGGCTGGCGCCGTGAAGGCATTAAGTACAGACGAAACGAGCTGTTCCTTGATGTACTAGAGTATGTCAACTTGTTGATGTCACCGCAAGGTCAAGTGCTCTCTGCTCACGTGGCTGGGAAAGTGGTCATGAAGTCATATCTGTCCGGGATGCCAGAGTGCAAGTTTGGGATCAATGATAAAATCGTTATGGAAGCCAAGGGAAAGGGAAATGGAGGCATATCGGGTAACACGGACAGTGATCCGGCTCGCTCTGGGAAGCCAGTAGTGGTCATTGACGACTGTCAGTTCCACCAGTGCGTGAAGCTGAGCAAGTTCGAAACTGAACATTCCATCTCCTTCATACCACCAGACGGAGAGTTTGAACTCATGAGGTATCGCACAACAAAAGACATATCTCTGCCGTTCCGCGTCATCCCGCTCGTGCGGGAGGTGGGCCGCACCAAGATGGAAGTCAAGGTTGTGCTGAAGAGTAACTTCAAGCCCTCCCTGCTCGGACAGAAGATCGAAGTGAAGATTCCAACTCCGCTGAACACCAGCGGGGTGCAACTGATTTGCTTGAAGGGGAAAGCGAAGTATAAAGCCTCTGAGAACGCTATCGTGTGGAAGATCAAGCGCATGGCGGGCATGAAGGAGACCCAGCTGTCTGCGGAGATTGAGCTGCTCGAGACCGACACCAAGAAGAAGTGGACGCGCCCGCCCATCTCCATGGGGTTCGAAGTTCCCTTTGCACCCTCCGGATTCAAGGTTCGCTACCTGAAGGTGTTCGAACCGAAGCTGAATTACTCGGACCATGACGTCATCAAGTGGGTGCGCTACATCGGACGCTCCGGACTCTACGAGACCAGGTGCTGA

Protein

MIGGLFVYNHKGEVLISRVYRDDIGRNAVDAFRVNVIHARQQVRSPVTNIARTSFFHIKRANIWLAAVTKQNVNAAMVFEFLLKIIDVMQSYFGKISEENIKNNFVLIYELLDEILDFGYPQNSDTGVLKTFITQQGIKSASKEEQAQITSQVTGQIGWRREGIKYRRNELFLDVLEYVNLLMSPQGQVLSAHVAGKVVMKSYLSGMPECKFGINDKIVMEAKGKGNGGISGNTDSDPARSGKPVVVIDDCQFHQCVKLSKFETEHSISFIPPDGEFELMRYRTTKDISLPFRVIPLVREVGRTKMEVKVVLKSNFKPSLLGQKIEVKIPTPLNTSGVQLICLKGKAKYKASENAIVWKIKRMAGMKETQLSAEIELLETDTKKKWTRPPISMGFEVPFAPSGFKVRYLKVFEPKLNYSDHDVIKWVRYIGRSGLYETRC

Similarity

Belongs to the adaptor complexes medium subunit family.

Uniprot

A0A2W1BMN6   A0A2H1WBL6   A0A1E1W2Y4   A0A194Q1A3   A0A1E1WL47   A0A212F6T2   + More
A0A194RGJ0   A0A1Y1LIL9   J3JY16   A0A290WIE1   V5GV22   A0A1S4F3P7   A0A023ETD3   A0A182YEM0   A0A1B0DB42   A0A2M3Z5C8   A0A2M4AED3   A0A182FC77   A0A182P0P2   A0A182MNX9   A0A182QTH7   A0A182VJ49   A0A182NK50   W5JM91   B0W9Z0   A0A182WLJ2   A0A182TTG1   A0A084WK82   A0A182JCI3   A0A182KQE6   A0A182WX02   Q7QIY5   A0A182RP69   A0A182I2J7   A0A1L8DVT8   A0A1W4XU22   A0A182G6L5   U5EY07   A0A1Q3FD54   A0A2J7Q9M1   A0A1B0GGS7   A0A067REN1   A0A2P8XXH6   D6X399   A0A182SY27   Q17GE1   A0A0K8TSV7   A0A1B6FF40   A0A3B0KI17   Q1WKZ7   B4R022   Q1WKZ8   Q298U5   B4G4P4   B4PLQ6   A0A0M4EVC0   B3MTJ2   B4NAD9   B4HE94   B4JSA9   Q1WKZ9   O62530   A0A336JVX0   B4KC23   R4WDL3   A0A1I8PP22   T1PDM2   B4MB90   A0A0L0CE74   W8BCR1   A0A0K8VW71   A0A034V1Y0   A0A1B6CU13   A0A1A9UJQ7   D3TLG7   A0A0A1XMW8   A0A1A9WY43   A0A1W4VQG3   A0A069DTN2   E0VLK9   A0A1J1ILA7   A0A151IWS7   F4WIT2   A0A195B3T8   A0A195FP83   A0A158P486   A0A1A9Z9M4   A0A2A3EDC4   V9IE15   A0A0M8ZTN3   A0A088A9E6   A0A0A9W9N2   A0A195CTW4   E9IW97   E2B0M3   A0A151WLM2   A0A026VY24   A0A1S3DCH7   A0A0L7R6P2   A0A0P4VNM8  

Pubmed

28756777    26354079    22118469    28004739    22516182    23537049    + More
24945155    25244985    20920257    23761445    24438588    20966253    12364791    14747013    17210077    26483478    24845553    29403074    18362917    19820115    25863352    17510324    26369729    16387879    17994087    15632085    17550304    18057021    10375633    10589826    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    23691247    25315136    26108605    24495485    25348373    20353571    25830018    26334808    20566863    21719571    21347285    25401762    26823975    21282665    20798317    24508170    30249741    27129103   

EMBL

KZ150021    PZC74885.1    ODYU01007444    SOQ50222.1    GDQN01009742    JAT81312.1    + More
KQ459580    KPI99362.1    GDQN01003311    JAT87743.1    AGBW02009971    OWR49445.1    KQ460211    KPJ16559.1    GEZM01054658    JAV73504.1    APGK01018731    APGK01018732    APGK01018733    BT128139    KB740082    KB631720    AEE63100.1    ENN81590.1    ERL85582.1    KX965605    ATD50466.1    GALX01002949    JAB65517.1    GAPW01001497    JAC12101.1    AJVK01000724    AJVK01000725    GGFM01002971    MBW23722.1    GGFK01005789    MBW39110.1    AXCM01013897    AXCN02000430    ADMH02001152    GGFL01004204    ETN63889.1    MBW68382.1    DS231867    EDS40648.1    ATLV01024097    KE525349    KFB50626.1    AXCP01001499    AAAB01008807    EAA04151.2    APCN01000166    GFDF01003537    JAV10547.1    JXUM01045130    JXUM01045131    KQ561427    KXJ78618.1    GANO01000636    JAB59235.1    GFDL01009524    JAV25521.1    NEVH01016346    PNF25285.1    AJWK01000701    KK852510    KDR22341.1    PYGN01001200    PSN36705.1    KJ476827    KQ971372    AHY84715.1    EFA09781.1    CH477262    EAT45645.1    GDAI01000385    JAI17218.1    GECZ01020954    JAS48815.1    OUUW01000013    SPP88130.1    DQ167725    ABB29498.1    CM000364    EDX13928.1    DQ167724    ABB29497.1    CM000070    EAL27860.1    CH479179    EDW24560.1    CM000160    EDW98005.1    CP012526    ALC47242.1    CH902623    EDV30582.1    CH964232    EDW80753.1    CH480815    EDW43191.1    CH916373    EDV94649.1    DQ167723    CH954182    ABB29496.1    EDV54143.1    AF110232    AE014297    AY070712    AJ005962    AAF14248.1    AAF56001.1    AAF56002.3    AAL48183.1    ACZ94982.1    CAA06785.1    UFQS01000004    UFQT01000004    SSW96876.1    SSX17263.1    CH933806    EDW16896.1    AK417629    BAN20844.1    KA646235    AFP60864.1    CH940656    EDW58361.1    JRES01000501    KNC30713.1    GAMC01011737    JAB94818.1    GDHF01009181    JAI43133.1    GAKP01023395    JAC35563.1    GEDC01020384    JAS16914.1    CCAG010017808    EZ422269    ADD18545.1    GBXI01001603    JAD12689.1    GBGD01001461    JAC87428.1    DS235272    EEB14265.1    CVRI01000054    CRK99862.1    KQ980846    KYN12260.1    GL888177    EGI65878.1    KQ976618    KYM79151.1    KQ981382    KYN42263.1    ADTU01008734    KZ288277    PBC29710.1    JR041152    AEY59373.1    KQ435896    KOX69299.1    GBHO01040381    GBRD01016361    GDHC01010799    GDHC01004304    JAG03223.1    JAG49465.1    JAQ07830.1    JAQ14325.1    KQ977279    KYN04133.1    GL766477    EFZ15149.1    GL444634    EFN60783.1    KQ982959    KYQ48707.1    KK107602    QOIP01000001    EZA48575.1    RLU27296.1    RLU27349.1    KQ414646    KOC66545.1    GDKW01000322    JAI56273.1   

Proteomes

UP000053268    UP000007151    UP000053240    UP000019118    UP000030742    UP000076408    + More
UP000092462    UP000069272    UP000075885    UP000075883    UP000075886    UP000075903    UP000075884    UP000000673    UP000002320    UP000075920    UP000075902    UP000030765    UP000075880    UP000075882    UP000076407    UP000007062    UP000075900    UP000075840    UP000192223    UP000069940    UP000249989    UP000235965    UP000092461    UP000027135    UP000245037    UP000007266    UP000075901    UP000008820    UP000268350    UP000000304    UP000001819    UP000008744    UP000002282    UP000092553    UP000007801    UP000007798    UP000001292    UP000001070    UP000008711    UP000000803    UP000009192    UP000095300    UP000095301    UP000008792    UP000037069    UP000078200    UP000092444    UP000091820    UP000192221    UP000009046    UP000183832    UP000078492    UP000007755    UP000078540    UP000078541    UP000005205    UP000092445    UP000242457    UP000053105    UP000005203    UP000078542    UP000000311    UP000075809    UP000053097    UP000279307    UP000079169    UP000053825   

Pfam

PF00928   Adap_comp_sub        + More
PF01217   Clat_adaptor_s
PF00173   Cyt-b5
PF00970   FAD_binding_6
PF00175   NAD_binding_1

Interpro

IPR028565   MHD        + More
IPR022775   AP_mu_sigma_su       
IPR011012   Longin-like_dom_sf       
IPR001392   Clathrin_mu       
IPR018240   Clathrin_mu_CS       
IPR036168   AP2_Mu_C_sf       
IPR017938   Riboflavin_synthase-like_b-brl       
IPR036400   Cyt_B5-like_heme/steroid_sf       
IPR017927   FAD-bd_FR_type       
IPR001199   Cyt_B5-like_heme/steroid-bd       
IPR001433   OxRdtase_FAD/NAD-bd       
IPR008333   Cbr1-like_FAD-bd_dom       
IPR018506   Cyt_B5_heme-BS       
IPR008978   HSP20-like_chaperone       
IPR039261   FNR_nucleotide-bd       

SUPFAM

SSF64356   SSF64356        + More
SSF49447   SSF49447       
SSF63380   SSF63380       
SSF55856   SSF55856       
SSF52343   SSF52343       
SSF49764   SSF49764       

Gene 3D

3.10.120.10    

ProteinModelPortal

A0A2W1BMN6   A0A2H1WBL6   A0A1E1W2Y4   A0A194Q1A3   A0A1E1WL47   A0A212F6T2   + More
A0A194RGJ0   A0A1Y1LIL9   J3JY16   A0A290WIE1   V5GV22   A0A1S4F3P7   A0A023ETD3   A0A182YEM0   A0A1B0DB42   A0A2M3Z5C8   A0A2M4AED3   A0A182FC77   A0A182P0P2   A0A182MNX9   A0A182QTH7   A0A182VJ49   A0A182NK50   W5JM91   B0W9Z0   A0A182WLJ2   A0A182TTG1   A0A084WK82   A0A182JCI3   A0A182KQE6   A0A182WX02   Q7QIY5   A0A182RP69   A0A182I2J7   A0A1L8DVT8   A0A1W4XU22   A0A182G6L5   U5EY07   A0A1Q3FD54   A0A2J7Q9M1   A0A1B0GGS7   A0A067REN1   A0A2P8XXH6   D6X399   A0A182SY27   Q17GE1   A0A0K8TSV7   A0A1B6FF40   A0A3B0KI17   Q1WKZ7   B4R022   Q1WKZ8   Q298U5   B4G4P4   B4PLQ6   A0A0M4EVC0   B3MTJ2   B4NAD9   B4HE94   B4JSA9   Q1WKZ9   O62530   A0A336JVX0   B4KC23   R4WDL3   A0A1I8PP22   T1PDM2   B4MB90   A0A0L0CE74   W8BCR1   A0A0K8VW71   A0A034V1Y0   A0A1B6CU13   A0A1A9UJQ7   D3TLG7   A0A0A1XMW8   A0A1A9WY43   A0A1W4VQG3   A0A069DTN2   E0VLK9   A0A1J1ILA7   A0A151IWS7   F4WIT2   A0A195B3T8   A0A195FP83   A0A158P486   A0A1A9Z9M4   A0A2A3EDC4   V9IE15   A0A0M8ZTN3   A0A088A9E6   A0A0A9W9N2   A0A195CTW4   E9IW97   E2B0M3   A0A151WLM2   A0A026VY24   A0A1S3DCH7   A0A0L7R6P2   A0A0P4VNM8  

PDB

2VGL     E-value=0,     Score=2028

KEGG

101745374    K11826 AP-2 complex subunit mu-1 | (RefSeq) AP-2 complex subunit mu

PATHWAY

04144    Endocytosis - Bombyx mori (domestic silkworm)

GO

GO:0016192   GO:0008289   GO:0006886   GO:0030131   GO:0006897   GO:0030122   GO:0033227   GO:0008565   GO:0016491   GO:0046872   GO:0020037   GO:0006810   GO:0009113   GO:0005524   GO:0009058   GO:0016742   GO:0003824  

Length:

440

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.1059

Exp number, first 60 AAs:

0.00032

Total prob of N-in:

0.00595

outside

1  -  440

 

 

Pi

206.307226

Theta

170.892102

Tajima's D

0.534747

CLR

0.106271

CSRT

0.524123793810309

Interpretation

Uncertain