Gene

KWMTBOMO04266  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA014271

Annotation

PREDICTED:_ATP-dependent_RNA_helicase_DBP9_[Papilio_polytes]

Location

Bomo_Chr8(+):1383640-1392055      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.559

CDS

ATGACTGACGAAAAAAAGGTTATGTTTCATGAAATGGAATTGGATGATAGAATACTAAAGGCCATATCACAGTTGGGATGGCCCGAACCTACACTCATACAAGAAACTGCCATTCCATTGTTATTGGAAGGGAAGGACGTCCTTATGAGAGCACGCACAGGGTCCGGTAAGACAGCTGCCTTTGCTGTACCAGTTATACAGAAGATATTAAACTTGAAGAACACAAGCAAACATCAGAGCATCAGGGCTTTGATATTGTCACCAAGTAAAGAGCTGTGTGGGCAGATAACATCGGTAATAGGAGATTTAACTATAAAATGTGCACGTGAAGTACGATGTATCGATATCTCTGCAAATGGAGACACTCAAACACAGAAAGCTATACTCTCTGATAAGCCCGACATAGTTGTAGCGACTCCTTCAAGGGCTCTAGTACATTTAAAAGCAAACAACATGAGGCTCAAGGAAGATTTGTCTATGCTGGTTGTCGATGAGGCTGATCTGATCTTCTCTTTTGGTTATGAGGATGAAATCAAGGAATTATTGAGTCACCTTCCAAAAATCTATCAAGCAGTTCTTGCTTCAGCCACTCTGTCAGATGATGTGCTCAGTCTCAAGAAGATAGTACTCCGGAACCCTGTCACCCTAAAATTAGAGGAACCTGAACTGGCTCCATCGTCACAATTGCAGCATTACCATTTATTTGCAGAGGAAGATGATAAGGCGGCCATATTATATGCACTGTTGAAATTGAATTTAGTAAGAGGGAAAAGTATTATTTTCGTCAGAACAGTTGATAGATGTTACAAATTGAAACTATACTTAGAACAGTTCAAGATCGGATCGTGCGTGCTCAACTCTGAGCTGCCAGCAGCAGTGCGCTGTTTGTCAGTCGATCAGTTCAACCGCGGCCGGTATCAGATTATCGTCGCGTCGGACGAGAAGGCACTGGAGAAGCCTGATGGTGGAATATTGCCGATTGAGGAACGAACTAAAAAGAAAAAGCAATCTTCAAAACGAAAGAAAGACAAGGAGTCTGGTGTGTCCCGCGGTATTGACTTCCAACACGTATCGAACGTTATCAACTTTGACTTCCCTCTCGATGTCAACTCGTATGTACATAGAGCCGGACGGACTGCCCGAGGAAATAATCAGGGTTCCGTGCTGTCATTCGTGTCAATACGCGAGAAACCTTTGATGGATGCAGTCGAGCAACATCTCTCTAATGGATTCAAAGGACAAAAAGTTTTACAAAAGTATGAATTTGCACTAGAAGAAGTGGAAGGGTTCAGATACCGCTCCAGAGACGCGTGGCGCGCCGTCACCAGGATAGCAGTCAGAGAAGCTAGACTCAAAGAGATCAAACAGGAGCTCCTCAACTGTAAAAAGTTACAAGGCTACTTCGAGGAGAACCCATCAGATCTGGCAGCGTTAAGAAGGGACAAGGCACTGCACACTGTGAAGGTGCAGCAACATTTGGCACATGTACCAGAATACCTGCTTCCGGCTGCCCTGCGCAATGAAGATATTGTGGAAGACCAGGAAACAGTCACCGAGAAACCTCAAGTTAAGAAACGAAAGCAGAATGCGAACTTTGGAAGTGCTAAAAGACATAAATATCAGGCTCGGCAGAATGATCCACTAAAAAGTTTTGATGTTAAAAAGAAGAAGCAAACAGCAGGAGAGACTTGA

Protein

MTDEKKVMFHEMELDDRILKAISQLGWPEPTLIQETAIPLLLEGKDVLMRARTGSGKTAAFAVPVIQKILNLKNTSKHQSIRALILSPSKELCGQITSVIGDLTIKCAREVRCIDISANGDTQTQKAILSDKPDIVVATPSRALVHLKANNMRLKEDLSMLVVDEADLIFSFGYEDEIKELLSHLPKIYQAVLASATLSDDVLSLKKIVLRNPVTLKLEEPELAPSSQLQHYHLFAEEDDKAAILYALLKLNLVRGKSIIFVRTVDRCYKLKLYLEQFKIGSCVLNSELPAAVRCLSVDQFNRGRYQIIVASDEKALEKPDGGILPIEERTKKKKQSSKRKKDKESGVSRGIDFQHVSNVINFDFPLDVNSYVHRAGRTARGNNQGSVLSFVSIREKPLMDAVEQHLSNGFKGQKVLQKYEFALEEVEGFRYRSRDAWRAVTRIAVREARLKEIKQELLNCKKLQGYFEENPSDLAALRRDKALHTVKVQQHLAHVPEYLLPAALRNEDIVEDQETVTEKPQVKKRKQNANFGSAKRHKYQARQNDPLKSFDVKKKKQTAGET

Uniprot

H9JXK5   A0A2H1VFH9   A0A2W1BIL6   A0A194Q7G4   S4PHF8   A0A212EZ54   + More
A0A0N0PCP0   Q6SC69   A0A1Y1MW36   A0A1W4WQ56   D6WA24   A0A2P8XYU9   A0A1B6IJA6   A0A2J7QIQ5   A0A1B6GXX6   A0A067RE39   A0A154PSR2   A0A0L7QLH1   A0A0N1IU64   K7J999   E2BX14   E2ASM9   A0A2A3E7B5   A0A088ATR0   A0A232EXK1   A0A026VWF3   A0A310SEU2   A0A0J7NVV6   A0A0C9QRP3   E0VIH2   A0A1B0CGH4   N6TL94   A0A158NB77   A0A1L8DH44   A0A1B6D0G9   Q17CT7   A0A023EWF3   A0A1J1I004   A0A1Q3F226   A0A151JP08   B0WL55   A0A151I3I8   A0A1S3K9Y8   A0A151WHZ9   A0A151I8I0   A0A2S2R068   A0A224XAF0   A0A1S3DBJ3   T1PH82   A0A1I8QAM0   U5ETC6   T1IZ77   A0A0K8VJ63   A0A146LM08   A0A2H8TWK3   T1HTF9   A0A069DZ93   A0A0P6JP99   A0A2S2NUK7   A0A164TXP7   A0A0A1XA24   W8CB78   J9JU07   A0A0P4XDW2   A0A1W4V866   A0A0L0CRC5   B3NYE1   B4PZ37   A0A1D2MHD5   Q9VRI0   A0A0P4VQ81   D3TQV8   A0A210PYA4   B4R3S0   E9H2Z1   A0A087SVY0   B4N156   Q1JPZ5   B3MRV7   B4L5D3   B4MB01   Q6DRE7   A0A3S1HIF0   A0A3Q1GJ09   R7V4G8   A0A3B5KJ21   A0A3B5A2C8   A0A3N0Z986   A0A1A9UHW5   A0A3B0J7M6   A0A1A7YWH7   Q29JE7   B4H9X8   A0A2T7P8Y2   M4AWF4   A0A3Q3RVZ4   A0A1A7WEG4   A0A3B3WDQ0   A0A3B3URI5  

Pubmed

19121390    28756777    26354079    23622113    22118469    14871623    + More
28004739    18362917    19820115    29403074    24845553    20075255    20798317    28648823    24508170    30249741    20566863    23537049    21347285    17510324    24945155    26483478    26383154    25315136    26823975    26334808    25830018    24495485    26108605    17994087    17550304    27289101    8582612    9144213    9520435    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    26109357    26109356    27129103    20353571    28812685    21292972    15256591    23594743    23254933    21551351    15632085    23542700   

EMBL

BABH01032797    BABH01032798    ODYU01002297    SOQ39598.1    KZ150021    PZC74902.1    + More
KQ459580    KPI99345.1    GAIX01003292    JAA89268.1    AGBW02011366    OWR46773.1    KQ460480    KPJ14352.1    AY460342    AAS18604.1    GEZM01020188    JAV89328.1    KQ971312    EEZ98575.1    PYGN01001145    PSN37192.1    GECU01020700    JAS87006.1    NEVH01013579    PNF28462.1    GECZ01002493    JAS67276.1    KK852563    KDR21293.1    KQ435180    KZC14956.1    KQ414915    KOC59472.1    KQ435698    KOX80724.1    GL451202    EFN79733.1    GL442333    EFN63564.1    KZ288357    PBC27116.1    NNAY01001707    OXU23166.1    KK107681    QOIP01000006    EZA48087.1    RLU21548.1    KQ760559    OAD59804.1    LBMM01001315    KMQ96525.1    GBYB01006389    JAG76156.1    DS235199    EEB13178.1    AJWK01011108    AJWK01011109    APGK01020042    APGK01020043    KB740153    KB632402    ENN81219.1    ERL94950.1    ADTU01010482    ADTU01010483    GFDF01008312    JAV05772.1    GEDC01018134    JAS19164.1    CH477304    EAT44185.1    JXUM01126431    JXUM01126432    GAPW01000824    KQ567067    JAC12774.1    KXJ69641.1    CVRI01000024    CRK92134.1    GFDL01013456    JAV21589.1    KQ978820    KYN28152.1    DS231980    EDS30228.1    KQ976487    KYM83654.1    KQ983098    KYQ47479.1    KQ978366    KYM94601.1    GGMS01014130    MBY83333.1    GFTR01007080    JAW09346.1    KA648039    AFP62668.1    GANO01001983    JAB57888.1    AFFK01020413    GDHF01013719    JAI38595.1    GDHC01019904    GDHC01009661    JAP98724.1    JAQ08968.1    GFXV01006117    MBW17922.1    ACPB03013963    GBGD01001040    JAC87849.1    GDIQ01013250    JAN81487.1    GGMR01007797    MBY20416.1    LRGB01001663    KZS10861.1    GBXI01006340    JAD07952.1    GAMC01005086    JAC01470.1    ABLF02024757    GDIP01242507    JAI80894.1    JRES01000125    KNC33979.1    CH954180    EDV47620.1    CM000162    EDX03098.1    LJIJ01001237    ODM92410.1    AF017777    AE014298    AY070624    AAC28406.1    AAF50818.2    AAL48095.1    AHN59987.1    GDKW01001967    JAI54628.1    EZ423810    ADD20086.1    NEDP02005386    OWF41466.1    CM000366    EDX18538.1    GL732587    EFX73929.1    KK112194    KFM57019.1    CH963920    EDW78037.1    BC116542    BC165407    AAI16543.1    AAI65407.1    CH902622    EDV34512.1    CH933811    EDW06392.1    CH940655    EDW66410.1    CR394525    AY648812    AAT68130.1    RQTK01000411    RUS80088.1    AMQN01000750    KB295062    ELU13728.1    RJVU01003789    ROL55009.1    OUUW01000003    SPP77815.1    HADX01012289    SBP34521.1    CH379063    EAL32354.2    CH479232    EDW36635.1    PZQS01000005    PVD29875.1    HADW01002531    SBP03931.1   

Proteomes

UP000005204    UP000053268    UP000007151    UP000053240    UP000192223    UP000007266    + More
UP000245037    UP000235965    UP000027135    UP000076502    UP000053825    UP000053105    UP000002358    UP000008237    UP000000311    UP000242457    UP000005203    UP000215335    UP000053097    UP000279307    UP000036403    UP000009046    UP000092461    UP000019118    UP000030742    UP000005205    UP000008820    UP000069940    UP000249989    UP000183832    UP000078492    UP000002320    UP000078540    UP000085678    UP000075809    UP000078542    UP000079169    UP000095301    UP000095300    UP000015103    UP000076858    UP000007819    UP000192221    UP000037069    UP000008711    UP000002282    UP000094527    UP000000803    UP000242188    UP000000304    UP000000305    UP000054359    UP000007798    UP000007801    UP000009192    UP000008792    UP000000437    UP000271974    UP000257200    UP000014760    UP000005226    UP000261400    UP000078200    UP000268350    UP000001819    UP000008744    UP000245119    UP000002852    UP000261640    UP000261480    UP000261500   

PRIDE

H9JXK5    Q9VRI0   

Pfam

PF00271   Helicase_C        + More
PF00270   DEAD
PF00013   KH_1
PF08669   GCV_T_C
PF01266   DAO
PF01571   GCV_T
PF16350   FAO_M

Interpro

IPR027417   P-loop_NTPase        + More
IPR014014   RNA_helicase_DEAD_Q_motif       
IPR011545   DEAD/DEAH_box_helicase_dom       
IPR001650   Helicase_C       
IPR014001   Helicase_ATP-bd       
IPR004088   KH_dom_type_1       
IPR036612   KH_dom_type_1_sf       
IPR004087   KH_dom       
IPR006076   FAD-dep_OxRdtase       
IPR013977   GCV_T_C       
IPR029043   GcvT/YgfZ_C       
IPR036188   FAD/NAD-bd_sf       
IPR027266   TrmE/GcvT_dom1       
IPR006222   GCV_T_N       
IPR032503   FAO_M       

SUPFAM

SSF52540   SSF52540        + More
SSF54791   SSF54791       
SSF51905   SSF51905       
SSF101790   SSF101790       

Gene 3D

3.30.1370.10     3.30.1360.120     3.50.50.60    

CDD

cd00079  HELICc

ProteinModelPortal

H9JXK5   A0A2H1VFH9   A0A2W1BIL6   A0A194Q7G4   S4PHF8   A0A212EZ54   + More
A0A0N0PCP0   Q6SC69   A0A1Y1MW36   A0A1W4WQ56   D6WA24   A0A2P8XYU9   A0A1B6IJA6   A0A2J7QIQ5   A0A1B6GXX6   A0A067RE39   A0A154PSR2   A0A0L7QLH1   A0A0N1IU64   K7J999   E2BX14   E2ASM9   A0A2A3E7B5   A0A088ATR0   A0A232EXK1   A0A026VWF3   A0A310SEU2   A0A0J7NVV6   A0A0C9QRP3   E0VIH2   A0A1B0CGH4   N6TL94   A0A158NB77   A0A1L8DH44   A0A1B6D0G9   Q17CT7   A0A023EWF3   A0A1J1I004   A0A1Q3F226   A0A151JP08   B0WL55   A0A151I3I8   A0A1S3K9Y8   A0A151WHZ9   A0A151I8I0   A0A2S2R068   A0A224XAF0   A0A1S3DBJ3   T1PH82   A0A1I8QAM0   U5ETC6   T1IZ77   A0A0K8VJ63   A0A146LM08   A0A2H8TWK3   T1HTF9   A0A069DZ93   A0A0P6JP99   A0A2S2NUK7   A0A164TXP7   A0A0A1XA24   W8CB78   J9JU07   A0A0P4XDW2   A0A1W4V866   A0A0L0CRC5   B3NYE1   B4PZ37   A0A1D2MHD5   Q9VRI0   A0A0P4VQ81   D3TQV8   A0A210PYA4   B4R3S0   E9H2Z1   A0A087SVY0   B4N156   Q1JPZ5   B3MRV7   B4L5D3   B4MB01   Q6DRE7   A0A3S1HIF0   A0A3Q1GJ09   R7V4G8   A0A3B5KJ21   A0A3B5A2C8   A0A3N0Z986   A0A1A9UHW5   A0A3B0J7M6   A0A1A7YWH7   Q29JE7   B4H9X8   A0A2T7P8Y2   M4AWF4   A0A3Q3RVZ4   A0A1A7WEG4   A0A3B3WDQ0   A0A3B3URI5  

PDB

5IVL     E-value=3.02892e-45,     Score=460

KEGG

101735963    K14810 ATP-dependent RNA helicase DDX56/DBP9 [EC:3.6.4.13] | (RefSeq) probable ATP-dependent RNA hel

GO

GO:0005524   GO:0003676   GO:0004386   GO:0003723   GO:0016491   GO:0004004   GO:0043565   GO:0005515   GO:0016021   GO:0042555   GO:0006260   GO:0004672   GO:0048384  

Length:

563

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00701

Exp number, first 60 AAs:

0.00146

Total prob of N-in:

0.00270

outside

1  -  563

 

 

Pi

214.755554

Theta

192.889925

Tajima's D

0.535064

CLR

10.283446

CSRT

0.525123743812809

Interpretation

Uncertain