SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04261
Pre Gene Modal
BGIBMGA014268
Annotation
PREDICTED:_forkhead_box_protein_J3-like_[Papilio_xuthus]
Transcription factor
Location in the cell
Nuclear   Reliability : 3.909
 

Sequence

CDS
ATGAGCGAGTCGCCGGGAGTGGAGTGGCTGCCCGCGTACAGTCCTGGAACTCCTCGCCACAGCCCCCTCGGACCGATACCGCGCTTCCTTTACGAGGATGTGCAGCCACTCGCTTTGCAACAGGAAAACAACAACAAGGACGAACAGAAGGAGAACACTAACAAAATTAAACATGCGAAACCAGCCTACAGCTATGCAAGCATGATAAGGCTTGCAATCAGCAGCTCTCCGAATGGCAAGATGACTCTGAATGAGATATACACTTATATATGTAATGCATTCCCATATTATAAAGAGGCTGGGAAGGGTTGGATGAACTCTATAAGACACAACCTGTCATTAAACAAATGTTTTATGAAAGTTGCTCGGAGTAAAGATGATCCAGGGAAGGGTTCATATTGGGCGATGGATACTAGTTACAAAATGGCAGAGGTCACTCCTAGAAGACGTAGGAGTTTAAGGATGGCACCGTACAGTCCAGAGTGCAGCTCGAACAGCAGCGGAGAAGCCGGGCCCCCCGCTGCCACGCCCACGCCTCCGCCGACTCCCACCACCCCCACCACTCCCACTTCGCCACACGTCCTGCCAGTCAAGGAGGAACCCGTCACCAATGAGCAGTCTGATTCTAAACACACGGACGATGCGTTATCGGCTCTGATGAATGAGGAACTAATGACCGACGTTGACATTACCAGAGAACGTTGGCTGTGCGAGCCCGGCCGGCGGCACGTGTGCGTGGTCGCCCGCCACAGCTCGCTCACGGACGACTACGGAAACTTCGGACACAACCCGCCGCGGCCCGACGACTGCGACTGTCCGTCCGACCCGCAGTACTACGAGCCCGATGCGTTATAA
Protein
MSESPGVEWLPAYSPGTPRHSPLGPIPRFLYEDVQPLALQQENNNKDEQKENTNKIKHAKPAYSYASMIRLAISSSPNGKMTLNEIYTYICNAFPYYKEAGKGWMNSIRHNLSLNKCFMKVARSKDDPGKGSYWAMDTSYKMAEVTPRRRRSLRMAPYSPECSSNSSGEAGPPAATPTPPPTPTTPTTPTSPHVLPVKEEPVTNEQSDSKHTDDALSALMNEELMTDVDITRERWLCEPGRRHVCVVARHSSLTDDYGNFGHNPPRPDDCDCPSDPQYYEPDAL

Summary

Pfam
PF00250   Forkhead
Interpro
IPR036390   WH_DNA-bd_sf        + More
IPR036388   WH-like_DNA-bd_sf       
IPR001766   Fork_head_dom       
SUPFAM
SSF46785   SSF46785       
Gene 3D
PDB
1D5V     E-value=3.73227e-23,     Score=266

Ontologies

Topology

Subcellular location
Nucleus  
Length:
284
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00112
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00578
outside
1  -  284
 
 

Population Genetic Test Statistics

Pi
218.824122
Theta
188.919075
Tajima's D
0.223792
CLR
60.796716
CSRT
0.432228388580571
Interpretation
Uncertain
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