SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04260
Pre Gene Modal
BGIBMGA007097
Annotation
retroelement_polyprotein_[Glyptapanteles_flavicoxis]
Location in the cell
Nuclear   Reliability : 2.864
 

Sequence

CDS
ATGCAGATGATGCATGTGATGCAGCAAATGTCGGAACGCTTAAGTACACCAGCAGAAACTAAGATACGTATAAATGATATTTACCTACCATCATTTGACCCCGATACTAGTGTGGGAGTACGTGAGTGGTGTCAACATATCGACAAAGCCATTGAGACTTATCGACTCAACGACTTTGACATACGCATGAAAGTTGGCAGCCTCCTAAAGGGAAGAGCGAAGATGTGGGTTGACGATTGGATGGTCACTGCAGCTTCGTGGGCTGAGCTGCGCAACAATCTTATCACGACATTCGAGCCAGAAAATCGCTATTCTCGAGACATAGCTCGATTTAGAGAACATATGTACGACTCTTCAAAGGACATCTCGGAGTTCTTGTCACGAGCTTGGGTCTTGTGGAGGAGGATCACCAAAGACAAACTATCTAATGAAGATGCAGTTGAAGCAGTTATTGGTTGCGTGAATGACGAGAGACTTAGGATCGAGCTACTGAACACGAGAGCCACAACAGTCCCAGAATTGATATCTGTTGCATCATCAGTAAGAGCCATGAAGCGTTTTCACGAGGGCTCAAATAAGCTGAGTACAAATAAGCGTCCCCGTTTTTCGAATTCTACTTCATCAAATTTATCCTGCCATATCTGTAAAAGAACTAATCACACCACCAACGAATGCTACTACAAAATGGTTACCGAATCAAAGCCCGAACAAAGAAACAAAACAACAACTGAGACAACGAAGGAAGTAACCTCCTACCAGAACAATAAAACAACAATCTGTTCATTCTGCAAAATACCAGGACACAGTTTTGAAACATGCTTCAAACGTGAACGAGCATTGACATCAAACGTAAATTACTTTGCTGGATTAAAACTATCTCCGATTCAGGTGAACTTTGGATCAAAGAGTTTTCAGTTTGATAGTGGCGCAGAATGCTCACTTATGCGGGAATCCGTAGCAGCTCAAATACCCGGAAAAAGACTACAAACGGCAGACTACTTGAAAGGAATTGGACAATTTCCTGTACTTTCAATAGCTACACTGGTAACGGTAGGTGTTATCGATAACATCAACGTTGAATTACAGTTTCACATAGTGGCAGATTACGAGATGACTACAGATATTTTAGTGGGTATGAACTTGATAAACAATACGAACCTAGCTATGACGATCACTTCGGGCGGAACGAGGCTAGCACGTCAGCCACATGTTAATCAAGTTCAGTGTATAAATCCAATTTTCGATAAACTGGATTGTGATCTCACAAATGAAGATATCGCAAAATTACGCACCCTTCTAAACAAATATCAGCACCTGTTTATCAGAGGGTATCCAACAACTCGTGTCAAGACAGGTGAACTGGAAATCCGCCTGAAGAATCCAAACAAATATGTAGAACGAAGACCTTACAGGCTCAGTCCAATCGAACGAGAAAGGGTGCGAGCCATTGTGAAAGAGTTGATGGAGCATGGCATTGTACGCGAAAGCAAGTCCCCATACTCCAGTCCCATCATCTTGGTGAAGAAGAAGAATGGTGACGATCGCATGTGCGTGGATTTCAGAGAACTTAACTCTAATACCTTACGGGACCATTACCCGCTGCCACTAATTTCAGACCAAATTGACCAATTGGCCAAGGGGCAATTCTTTACAACCTTTGACATGGCCGCAGGGTTTCACCAAATACCTATTGCAGAATCATCAATTGAAAAGACAGCCTTTGTCACACCGGATGGGCTGTATGAATATACGACTATGCCATTTGGATTGAGTAATGCATGTTCAGTCTATCAACGATGCATCAACAGAGCTCGGAGCTCTTTAATAGGGAATGCAGCTCAAGTCTACGTCGATGACGTATTAAGCAGATGTGAAAATATCGCAGAAGGGCTGTCAAACATAGAACGTATTCTAATAGCACTACAAGATGCGGGCTTTTCCATTAATGCTGATAAATGCAGTTTTTTTAAGCGTTCAATCGAATATTTGGGTAACGTAGTATCCAATGGACAAGTCTGGCCAAGCCCACGGAAAATAGATGCTCTGGTAAAATCGCCTGTACCAACAACACCCAGACAAGTAAGACAATTTTGTGGATTGGCTGGATACTTTAGAAAATTTATAGCAGACTTCTTACGCATAATGATACCACTATACGAGTTGACCAAATCAGGGGCTAAATGGGAGTGGGACGAGCGCCATGAGAAAGCAAGAGAGCATGTCATTCAGTGCTTAACATCAACTCCAGTACTAACACTATTCCAGGAGGAAGCACCTATTCAATTGTACACAGATGCAAGTAGTTTGGGATTCGGAGCAGTACTGGTACAAGTAATTGCCGGACGACAACATGCAGTTGCCTTTATGAGCATGAGAAATACTGAAACAGAAAGTCGCTATCACTCTTATGAATTAGAGACCTTGGCAGTAGTCCGAGCAATAAAACACTTCCGGCAGTATCTTTATGGACGTAAGTTTACAGTTATCACAGACTGTAATGCACTAAAAGCATCCAAACACAAAAAGGACTTACTCCCTAGAATCCACCGTTGGTGGGCATTTCTACAAAACTATAATTTTGAGGTTGAATACCGCAAGGGTCAACAGCTTCAACACGCAGACTACTTCAGTAGGAACCCAGTCGAACTCACAGTGAATATAATGACCAGAGATCTAGACTGGCTGAAAATTGAACAGCGACGTGATGAAACACTACGAGCTATAATGGATGGTATGAGTAATAACAATCCAAGCAACGGCTATATGCTAGAAAACAATGTCCTCAAGCGTATCGTACAAGATCCAACCTTCGGACACCGATACTGCACAGTGGTACCCAGGTCCTTTCAGTGGAGTTTAATAAACTCCTTCCACACCGCACTGAAACACCCTGGCTGGGAAAAGACGTTGCAGAAAATTAAGGACAGCCACTGGTTTGACAACATGAGCACGAAGGTACGAAAATTTGTTGACAATTGCGTGGTCTGCAGGACATCGAAAGGAGCATCTGGTGCGGTACAAGCTCAAATGCACCCGATTCAGAAATCGTCTGCTGCGTTTCAAGTAATACACATGGATATAACAGGCAAGATGGGAACATCCAACGACCAACCGTATGTGATTATCACCATAGATGCTTTTACAAAATACGTGCTATTCTATTATGCAACTAACAAAAATCCACCCAGCACATTAGCTGCCCTAAAGCGTACGGTTCATCTATTCGGTACTCCTGTCCAAATAATAGTCGACGGTGGAAGAGAGTTCCTCGGTGAATTCAAGACCTACTGCGATAGGGTAGGTATTGACATTCATGCTATAGCACCAGGAGTCAGCCGAGCAAATGGACAAGTAGAACGCGTCGTAGCTACACTAAAAAATACTCTTACTATGATCAACAATTATGAAACAGAAGAGTGGCACACAACGATTGCAGAACTTCAGCTAGCAATAAATTGCACTCCGCATCGTGTGACAGGCGTGGCTCCACTTACATTACTCACTCAGCGAAAGCATTGTGTTCCTCCAGAGCTACTCAATTTAGTAAATATTGACGAGCAGACTATTGATATTGAAGCACTCGCTAACCATGTTCAACACAAGATGTCACAAAATGCAGAACAGGACAGGCAACGTTTCAATTCAAAAAAAGCTAGGATCCATCATTTCCAGCGTGGTGATTATGTGCTCATAAAAAATAATCCTCGTAATCAAACTTCGTTGGACCTCAAATTCAGCGAGCCATATGAGATAACAAGAATCCTGGACAACGACCGCTATTTAGTAAAAAAGGTGGTTGGTTCAGGGCGTTCAAGAAAAGTAGCTCATCATCAACTCCGTCGGGCACCGCAACCTGGAGACCAGATAGCCGTATCGGCGGAAGAAGACGACCCTCCAGCATCAGCCGATGAACCTATATTTTTTATTTGA
Protein
MQMMHVMQQMSERLSTPAETKIRINDIYLPSFDPDTSVGVREWCQHIDKAIETYRLNDFDIRMKVGSLLKGRAKMWVDDWMVTAASWAELRNNLITTFEPENRYSRDIARFREHMYDSSKDISEFLSRAWVLWRRITKDKLSNEDAVEAVIGCVNDERLRIELLNTRATTVPELISVASSVRAMKRFHEGSNKLSTNKRPRFSNSTSSNLSCHICKRTNHTTNECYYKMVTESKPEQRNKTTTETTKEVTSYQNNKTTICSFCKIPGHSFETCFKRERALTSNVNYFAGLKLSPIQVNFGSKSFQFDSGAECSLMRESVAAQIPGKRLQTADYLKGIGQFPVLSIATLVTVGVIDNINVELQFHIVADYEMTTDILVGMNLINNTNLAMTITSGGTRLARQPHVNQVQCINPIFDKLDCDLTNEDIAKLRTLLNKYQHLFIRGYPTTRVKTGELEIRLKNPNKYVERRPYRLSPIERERVRAIVKELMEHGIVRESKSPYSSPIILVKKKNGDDRMCVDFRELNSNTLRDHYPLPLISDQIDQLAKGQFFTTFDMAAGFHQIPIAESSIEKTAFVTPDGLYEYTTMPFGLSNACSVYQRCINRARSSLIGNAAQVYVDDVLSRCENIAEGLSNIERILIALQDAGFSINADKCSFFKRSIEYLGNVVSNGQVWPSPRKIDALVKSPVPTTPRQVRQFCGLAGYFRKFIADFLRIMIPLYELTKSGAKWEWDERHEKAREHVIQCLTSTPVLTLFQEEAPIQLYTDASSLGFGAVLVQVIAGRQHAVAFMSMRNTETESRYHSYELETLAVVRAIKHFRQYLYGRKFTVITDCNALKASKHKKDLLPRIHRWWAFLQNYNFEVEYRKGQQLQHADYFSRNPVELTVNIMTRDLDWLKIEQRRDETLRAIMDGMSNNNPSNGYMLENNVLKRIVQDPTFGHRYCTVVPRSFQWSLINSFHTALKHPGWEKTLQKIKDSHWFDNMSTKVRKFVDNCVVCRTSKGASGAVQAQMHPIQKSSAAFQVIHMDITGKMGTSNDQPYVIITIDAFTKYVLFYYATNKNPPSTLAALKRTVHLFGTPVQIIVDGGREFLGEFKTYCDRVGIDIHAIAPGVSRANGQVERVVATLKNTLTMINNYETEEWHTTIAELQLAINCTPHRVTGVAPLTLLTQRKHCVPPELLNLVNIDEQTIDIEALANHVQHKMSQNAEQDRQRFNSKKARIHHFQRGDYVLIKNNPRNQTSLDLKFSEPYEITRILDNDRYLVKKVVGSGRSRKVAHHQLRRAPQPGDQIAVSAEEDDPPASADEPIFFI

Summary

EMBL
EF710649    ACE75273.1    GBHO01036023    GBHO01032007    JAG07581.1    JAG11597.1    + More
GBHO01040010    GBHO01001812    JAG03594.1    JAG41792.1    X14037    CAA32198.1    GDHC01004980    JAQ13649.1    GBHO01030786    JAG12818.1    GDHC01018907    JAP99721.1    GBHO01032415    JAG11189.1    GBHO01032413    JAG11191.1    GDHC01012341    JAQ06288.1    GBHO01011083    GBHO01009497    JAG32521.1    JAG34107.1    GBYB01013920    JAG83687.1    LBMM01008871    KMQ88569.1    ABLF02004401    ABLF02013544    ABLF02013550    GGMR01009949    MBY22568.1    ABLF02033943    ABLF02042737    LBMM01010976    KMQ87102.1    LBMM01011782    KMQ86633.1    GBBI01004477    JAC14235.1    GEZM01033083    JAV84424.1    KA649989    AFP64618.1    LBMM01005919    KMQ91096.1    GBBI01004551    JAC14161.1    KMQ91095.1    GBBI01004550    JAC14162.1    GEHC01000930    JAV46715.1    GGMR01015682    MBY28301.1    GAKP01019383    JAC39569.1    ABLF02014660    ABLF02042774    GBXI01005773    JAD08519.1    ABLF02008401    ABLF02008404    GAKP01001563    JAC57389.1    GFXV01005120    MBW16925.1    GEHC01000888    JAV46757.1    GFTR01008753    JAW07673.1    GGMR01003388    MBY16007.1    ABLF02041876    GGMR01005091    MBY17710.1    GAKP01016235    JAC42717.1    GAMC01015907    JAB90648.1    ABLF02017401    ABLF02003120    ABLF02004015    ABLF02057179    ABLF02066208    GAKP01014483    JAC44469.1    GAMC01007326    JAB99229.1    GGMR01011041    MBY23660.1    GBBI01004613    JAC14099.1    GBBI01004549    JAC14163.1    GEHC01000876    JAV46769.1    GGMR01014665    MBY27284.1    GGFL01001689    MBW65867.1    GAMC01020207    JAB86348.1    GGMS01012726    MBY81929.1    ABLF02005846    GGMR01000717    MBY13336.1    GGMR01015939    MBY28558.1    GBXI01015151    JAC99140.1    GGFK01005990    MBW39311.1    GAKP01016237    JAC42715.1    GAKP01008942    JAC50010.1   
Pfam
PF17919   RT_RNaseH_2        + More
PF17921   Integrase_H2C2
PF00665   rve
PF00098   zf-CCHC
PF00078   RVT_1
PF17917   RT_RNaseH
PF00077   RVP
PF03732   Retrotrans_gag
PF02037   SAP
PF09668   Asp_protease
PF13873   Myb_DNA-bind_5
PF12384   Peptidase_A2B
PF16064   DUF4806
Interpro
IPR041577   RT_RNaseH_2        + More
IPR001584   Integrase_cat-core       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR021109   Peptidase_aspartic_dom_sf       
IPR000477   RT_dom       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR041373   RT_RNaseH       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR018061   Retropepsins       
IPR005162   Retrotrans_gag_dom       
IPR036361   SAP_dom_sf       
IPR003034   SAP_dom       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR028002   Myb_DNA-bind_5       
IPR024650   Peptidase_A2B       
IPR032071   DUF4806       
SUPFAM
SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF50630   SSF50630       
SSF68906   SSF68906       
Gene 3D
PDB
4OL8     E-value=2.03646e-68,     Score=663

Ontologies

Topology

Length:
1309
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.16025
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00628
outside
1  -  1309
 
 

Population Genetic Test Statistics

Pi
260.019745
Theta
177.288445
Tajima's D
3.472065
CLR
0
CSRT
0.993200339983001
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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