SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04253
Pre Gene Modal
BGIBMGA014265
Annotation
hypothetical_protein_KGM_18518_[Danaus_plexippus]
Location in the cell
PlasmaMembrane   Reliability : 4.956
 

Sequence

CDS
ATGAGTAAGATCTTCGCGGCGCTACGTCGCTGCAAAAAGCTGGACGACAACGATAACACCACCCAGCTGTCCAGATGCCTTGGACTATTCGACCTCACCTCGCTAGGAGTCGGGAGTACCCTCGGTCTAGGAGTGTACGTGTTAGCCGGTGCTGTCGCCAAGACCGTTGCTGGACCGGCGGTTACCCTCAGCTTTTTGGTGGCAGCCATTGCTTCTGCTTTTGCTGGGTTATGTTACGCAGAATTCGCTTCAAGAGTTCCGAAAGCCGGTTCGGCTTACATCTACAGTTACGTGAGCGTCGGGGAGTTCATCGCGTTCACGATTGGTTGGAACCTGATCTTGGAGTACGCTATAGGAACAGCCAGCGTCGCCAAAGGCATGGCGGTCTACATTGACACCCTCTTCAATAACACCATGGCGAGGACGATGACGGCCGCAGCTCCGATCAATGTGTCCTTCTTGGCTGACTACCCTGATTTCTTTGCGTTTGGTCTAGTTATTTTAATAACTCTCCTGCTCGGTATTGGAGTTAGCGAATCTACGAAGCTAAACAACGTGTTCACGGCCCTCAATATGACAACCGTCATAATTGTTGTCGTCGCTGGAGCTATCAAAAGTAACCCAGCTAACTGGAACATCAAGCTGGCCGATATCCCACCCGAGTACGTGAGTCAAGCCGGCGAAGGAGGCTTTATGCCGTGGGGGGTGGCGGGCGTCATGGCGGGGGCGGCTAAATGCTTCTTCGGCTTCGTCGGCTTCGACTGCGTGGCCACCACGGGGGAAGAGGCCAAGAACCCGAAAAGAGACATACCTCTATCAATAGTTCTGTCTCTGATCATAATATTCTTGTCATATTTCTCCATCGCCACAGTGCTCACCATGATGCTGCCCTATTATTTGCAGGACGCGGAGGCTCCATTCCCGTATGTATTCGAACAAGCCAACTTACCAGTGATCAAATGGATAGTGACAGTGGGCGCTATATTTGCTTTGTGCACGAGTCTCCTCGGTGCCATGTTCCCACTCCCGCGGGTGCTGTACGCCATGGCGAGTGACGGGGTGCTGTTCCGACCACTAGCCGCCATAGAACCGAGGACCAAGACCCCATTGTTGGCCACTGCGATTAGCGGATTTCTTTCAGCAATAATGGCAGCCATGTTTAATCTGAATCAATTGATCGACATGATGTCTATAGGCACCTTGCTAGCGTACACCATCGTTGCAACAAGCGTTCTCATACTCAGGTACGAGGAGGAAGATGTATCCGTTAGCACGGAGAAGGTGTCGACGAGCGCGGGGGGTCTGGCGGCGGCGCTGCGTCAGGGTTGCAACCTGCTCGGACTCAAGTACCCCACGCAACTCTCCTCTACCATCGCCAAGACTACAATCGCTCTCTTCTTTGTGGTGGCGCTGGCGGCGTGCGTAGTGTTCCGTGTGGGGGACGAGGTGGGACCGGGAGGCGCAGTGGTGGGAGCGGCACTGGGTGCGGCCCTGGTGGCATTGCTGGTGGTACTGTACCGGCAACCAACTAATAACGTCACACATCTCTCATTTAAGGTGCCGCTAGTCCCACTTGTCCCATACCTGAGCGTCTGCATGAACGTGTATCTGATGGTCCAATTGGACTACCAGACGTGGGTTCGGTTCATCATATGGCTTGTAATCGGTTACCTAATTTACTTCTTCTATGGAATCCGTAACAGTTCACTCAATGCTTGGCCGCCCGCCGGTAAACTCGGTGACAAGGATAAAACACAAGTCGTAACAAAGTTTTGA
Protein
MSKIFAALRRCKKLDDNDNTTQLSRCLGLFDLTSLGVGSTLGLGVYVLAGAVAKTVAGPAVTLSFLVAAIASAFAGLCYAEFASRVPKAGSAYIYSYVSVGEFIAFTIGWNLILEYAIGTASVAKGMAVYIDTLFNNTMARTMTAAAPINVSFLADYPDFFAFGLVILITLLLGIGVSESTKLNNVFTALNMTTVIIVVVAGAIKSNPANWNIKLADIPPEYVSQAGEGGFMPWGVAGVMAGAAKCFFGFVGFDCVATTGEEAKNPKRDIPLSIVLSLIIIFLSYFSIATVLTMMLPYYLQDAEAPFPYVFEQANLPVIKWIVTVGAIFALCTSLLGAMFPLPRVLYAMASDGVLFRPLAAIEPRTKTPLLATAISGFLSAIMAAMFNLNQLIDMMSIGTLLAYTIVATSVLILRYEEEDVSVSTEKVSTSAGGLAAALRQGCNLLGLKYPTQLSSTIAKTTIALFFVVALAACVVFRVGDEVGPGGAVVGAALGAALVALLVVLYRQPTNNVTHLSFKVPLVPLVPYLSVCMNVYLMVQLDYQTWVRFIIWLVIGYLIYFFYGIRNSSLNAWPPAGKLGDKDKTQVVTKF

Summary

EMBL
BABH01032759    BABH01032760    BABH01032762    AGBW02011015    OWR47368.1    KQ461196    + More
KPJ06300.1    ODYU01005059    SOQ45566.1    RSAL01000147    RVE45876.1    KQ459580    KPI99332.1    NWSH01006137    PCG63637.1    KQ759893    OAD62068.1    KK107020    QOIP01000006    EZA62579.1    RLU21141.1    KK852470    KDR23205.1    NEVH01006738    PNF36658.1    CH902618    EDV41402.1    KPU79093.1    KZ288191    PBC34473.1    AJWK01014899    CM000159    KRK02526.1    KRK02527.1    EDW95573.1    KRK02523.1    KRK02524.1    KRK02525.1    KRK02528.1    KRK02529.1    CH480826    EDW44520.1    AE014296    AY094824    AAF51880.1    AAF51881.1    AAF51882.1    AAM11177.1    KZ150080    PZC73889.1    GL762106    EFZ22227.1    GANO01002139    JAB57732.1    NWSH01005355    PCG64279.1    CH933809    EDW18823.1    KRG06381.1    CH479188    EDW40301.1    CVRI01000011    CRK89275.1    KQ414705    KOC63248.1    KQ981993    KYN31122.1    CH964095    EDW79210.1    CH954178    EDV52805.1    KQS44446.1    CH379069    EAL30882.1    KRT07734.1    OUUW01000012    SPP87392.1    CH940647    EDW70004.1    KRF84667.1    CM002912    KMZ01252.1    KQ434783    KZC04782.1    ADTU01027569    ADTU01027570    ADTU01027571    CH916366    EDV97303.1    GBXI01013942    JAD00350.1    KQ982782    KYQ50731.1    GL888679    EGI58548.1    KQ978426    KYM94033.1    GAKP01005863    GAKP01005862    JAC53089.1    GEZM01024124    JAV87952.1    GEZM01024123    JAV87953.1    GFDG01002440    JAV16359.1    GFDG01002441    JAV16358.1    KQ976730    KYM76403.1    GDHF01007363    GDHF01000708    JAI44951.1    JAI51606.1    UFQS01000039    UFQT01000039    SSW98116.1    SSX18502.1    KQ435687    KOX81346.1    CCAG010018371    GFDL01012184    JAV22861.1    DS231875    EDS41806.1    GAMC01015489    GAMC01015488    GAMC01015487    GAMC01015486    GAMC01015485    GAMC01015484    JAB91066.1    JRES01000005    KNC34980.1    JXJN01010916    GGFL01002230    MBW66408.1    JXJN01006906    ADMH02001479    ETN62400.1    GGFL01003140    MBW67318.1    GEBQ01008325    JAT31652.1    GEBQ01013138    JAT26839.1    KM593906    KX289322    CH477843    AKN80692.1    ANI24619.1    EAT35727.1    GGFL01003139    MBW67317.1    AXCM01003009    AJVK01013542    AJVK01013543    AJVK01013544    GFDG01003196    JAV15603.1    JRES01001621    KNC21470.1    ETN62401.1    CCAG010010124    GEBQ01007703    JAT32274.1    GEBQ01005897    JAT34080.1    ATLV01014310    KE524956    KFB38619.1    GGFJ01003404    MBW52545.1    GALX01002883    JAB65583.1    GEDC01017684    JAS19614.1    GEDC01006564    JAS30734.1    AXCN02002053   
Pfam
PF13520   AA_permease_2        + More
PF13906   AA_permease_C
PF01150   GDA1_CD39
Interpro
IPR002293   AA/rel_permease1        + More
IPR029485   CAT_C       
IPR000407   GDA1_CD39_NTPase       
PDB
6F34     E-value=6.25642e-50,     Score=500

Ontologies

Topology

Length:
591
Number of predicted TMHs:
14
Exp number of AAs in TMHs:
300.26145
Exp number, first 60 AAs:
24.6807
Total prob of N-in:
0.95171
POSSIBLE N-term signal
sequence
inside
1  -  25
TMhelix
26  -  48
outside
49  -  57
TMhelix
58  -  80
inside
81  -  91
TMhelix
92  -  114
outside
115  -  159
TMhelix
160  -  178
inside
179  -  184
TMhelix
185  -  204
outside
205  -  230
TMhelix
231  -  253
inside
254  -  273
TMhelix
274  -  296
outside
297  -  317
TMhelix
318  -  340
inside
341  -  369
TMhelix
370  -  387
outside
388  -  391
TMhelix
392  -  414
inside
415  -  462
TMhelix
463  -  480
outside
481  -  483
TMhelix
484  -  506
inside
507  -  517
TMhelix
518  -  540
outside
541  -  544
TMhelix
545  -  564
inside
565  -  591
 
 

Population Genetic Test Statistics

Pi
254.694876
Theta
169.512542
Tajima's D
1.546522
CLR
0.074899
CSRT
0.793010349482526
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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