Gene

KWMTBOMO04246

Pre Gene Modal

BGIBMGA008115

Annotation

polyprotein_[Bombyx_mori]

Location

Bomo_Chr8(+):964816-968637      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 3.17

CDS

ATGGAAGGTATCACAGGAAAGCTTCAGATTGGCCTCCTAGATGAAAAAAATTGGGACACCTGGAAATACAAAGCCTTATGCTTACTACGCACCGTACCGTCGGCCCTAGAAGTAGTTGAAGGATCGTTCCAGGAGCCCACTCGTCCACCTACCGGATGCGGCGATGCTGAATTGGCGGCTTATCAACAACAAAAAGATAAGTTTGATAAAGCTGATGCCAGCGCTATCCTAATACTTACCACCAATATGCAAGAAGACACACTTCGAAAAGTGATGCGGTTCACTAAAGTACGTGATGTCTGGTTAGAGCTCCACAGGCTGTTCGACGGAACAAATGAGGACAAAACCTACAACCTGTGTATGAGTTTCTTCAGCTTTAAAAGGGATCAAGCAGACGACATAGCCACTCACATGTCAAAATTAAAGAACATTTGGACTGAACTGAATCAAGAACTCAAGAAGGACAGTAACCAAGAGCTACCCGAACTGCTACTTGTTTGTAAGATACTGGACACGCTTGATGATTCATACTTCAGCTTCAGAAGTAGTTGGCTCCTACTGCCCAAATCCAACCGTACTGTAGAAAACCTAACTAGTCATCTCTGCGCATTTGAAAGGGCACTGCAAGGTAACAACGTACCTTCGCATCATTCGGAAGCCCTGGTTTCGAATACGGAAAAGAAGAAGGACAAGAAGCTTAAATGCAACTACTGCCTAGGTATTGGCCACAGAGTACGCAACTGTCAAAAATGGATCCGTGACGGTAGACCTCCTAAGAGCCAAAATCCGACCCAGACAGCAACGCCTTCTACTTCAAAGACCGCTAATTTGTTACTCATGTCTTTAGAAGACAACGAAATCTTCACAGTTTCACGGGACAACGAGAACTGGTACATAGATAATGGTGCAACAAGCCACGTCACCAACAGAGCTGATTTTTTCCAAACCTACGAACATTTCAATGAGAACTACACTGTTACAACGTCCGCTGGTAATGAAGTCCGTGCCAAAGGCAAAGGAACAGTACAGCTCAGAGGATATGTTAACGGGAAACAAATCGACATCAGCCTGCAAGACGTCTGGTACGTTCCGGCCATAAGCAAGAACCTCTTCTCCGTACTCGCACTTCACGACCGAGTCCCGAATAGCACTTTTTCATCCAGGACAACTGAATGCAACGTCATTGTCAACGGGAAAGTATGCTTAATAGGGAAGAGACAAAAACAAGGTGGCTTATATCGACTGGAAGTAAAACCCGTACTGCCAGAAAAACCACCCGAAGTCTTTGCAACTACAGCAACGATGCAACTGTACCACGAGAGACTCGCTCACCAAAATAAAAGACACGTAAGAGCGACGATCCAACGCGAACTAGGTCTAAACCTGCCGATAGATAAAGAGACCTGTGAAGGCTGCATCTTTGGAAAGGCGCATCGACTTAAATTCGGTACAAGAACCCGAGCTACCGCGCCCGGAGAAATTGTACACACCGACGTTTGCGGACCGTTTCAATCTAGCTTCTCAAGCTATAAGTACTACGTTCTGTTCAAAGTCGACTTTACTGGCTATCGTATGGTGTACTTCATACGCAAGAAGTCCGAGGTCAAAGACAAGTTAGTTTTGATGATCGCTCAAACTAAAACAGTCGGACACACCATAAAATGCCTTCTAAGTGACAACGGCGGTGAATTTGACAACGCGTCCATAAAAAATGTTTTAGACACACACGGAATAGCACAGCGACTAGTCACCCCGTATACACCTGAACAAAACGGAGTAAGCGAAAGGGAGAACAGAACCCTAGTTGAGACAGCAAGATCAATGATGTACGCTCATGAGCCATTACCGCAAGTGCTATGGGCAGAGCTCATTAATACCGCCGCATACATACTAAACAGAACAGGTCCCACAAGTTTAGATAAATCTTCGCATGAACTTTGGTATGGAAAGAAACCTATTATTAAACATCTCCGTATAATAGGCTCAATCGCATACGTCCATATTCCAAAGCAGAAGCGTAGAAAATTCGACAAAAAGGCGATAAAAGGTCGACTTATCGGGTACGACGAAGATTGCTACCGTATCTGGGTCACAGACGGAAAACACTCGACGCTCGTCCGTTCTCGTGACGTAATCTTCGATGAGAAACCTCTTCCCATCTGTAATAGTGAAATTCCTAAAACAGAAGTTGAGACAAGAGAATATCCGATTACCATAACGCCAAATACGAACTTAGAAATAGAAGTTGCAATTCCAGAGCAAACACACGTTCACGAGGGAGATACAACTACTGAAACAAACTCCAACGACCATGATCATGTTCTCGAGGGAGAAGAATCGGATCAAGTCCTCTACGAAGACCATGACCAGGAAGACGAAACGACAGTTCCAGAAGAATTATTTTATGATGCTGAACCACCGCCAACCGGCTATAATCTTAGAGATCGCTCACTGATTCGACGTCCTGAGAGACTAAGAGATTACGTCTGTATCACTGAAACATTCCCAAATAATTTTGCAGACGCTATGAAAAGGGACGATCGCGAAGAATGGCAAAGGGCAATGGATAGCGAATTGAAATCCTTCGAAGACCTGAACGTTTGGACGCCGTGTGCATTGGCAAAAGGACGAAAAGCACTTCCCTGCAAATGGGTTTTACGGATCAAACGAAATCCAGATGGCACGATCGACAAATACAAGGCTCGACTTGTCGTAAAAGGGTACAGACAAAGGAAAGGAGTAGACTATGACCAGACCTTCAGTCCTGTCGCACGCCTGACTACTGTACGAGCACTACTCAGTGTTAGCGCGCATGAAAACTTACATCTGGTCCAATTCGACGTTTGCACAGCCTTTCTGAACGGAAAGCTCGAGGAAGAAATATACGTTCAACTGCCAGAAGGGTGCAACCTCACGGAAGGAACGTCTACCGTTTTCAAGCTTAACCGTAGCCTGTACGGACTTAAACAAGCACCAAGGTGCTGGAATTCTTGCTTTCAAGAGATCCTATTGGATATGAACTTCAAACAGTCCGAAGCTGATTGCTGCTTATATTCAAGAGAAGTTAACGGGAAGAAACTACTGATCACGTTGTACGTCGATGACGCTATTCGCTATTCTGGAGGCACAGTTTCATGGATCAGTCAGCGACAAACATCGGTCGCTATCTCCACTACAGAAGCCGAAATTGTGGCAGCTAGTGAAGCTGGCAGAGAACTAATGTGGCTTGCTAGACTATACCAGGCATTGACTACAATTGCGGACGTACCGGTTCTGCATGTGGACAATGAAGCTGCTGTTCGTCTTGCTCACAACCCCGAGTTTCACAAGAGAACGAAGCATATCCGGCTCAGACATTTCTACGTCAGAGAATTGGTAACTGAGGGTATCTGCAACGTTGTACGGATCGGAACAAAGGATCAAGTCGCAGACATCCTTACCAAACCACTACCTCGTACGTCATATGCAGTTCTACGCCAGGCGCTAGGACTGTGTACTATGTAA

Protein

MEGITGKLQIGLLDEKNWDTWKYKALCLLRTVPSALEVVEGSFQEPTRPPTGCGDAELAAYQQQKDKFDKADASAILILTTNMQEDTLRKVMRFTKVRDVWLELHRLFDGTNEDKTYNLCMSFFSFKRDQADDIATHMSKLKNIWTELNQELKKDSNQELPELLLVCKILDTLDDSYFSFRSSWLLLPKSNRTVENLTSHLCAFERALQGNNVPSHHSEALVSNTEKKKDKKLKCNYCLGIGHRVRNCQKWIRDGRPPKSQNPTQTATPSTSKTANLLLMSLEDNEIFTVSRDNENWYIDNGATSHVTNRADFFQTYEHFNENYTVTTSAGNEVRAKGKGTVQLRGYVNGKQIDISLQDVWYVPAISKNLFSVLALHDRVPNSTFSSRTTECNVIVNGKVCLIGKRQKQGGLYRLEVKPVLPEKPPEVFATTATMQLYHERLAHQNKRHVRATIQRELGLNLPIDKETCEGCIFGKAHRLKFGTRTRATAPGEIVHTDVCGPFQSSFSSYKYYVLFKVDFTGYRMVYFIRKKSEVKDKLVLMIAQTKTVGHTIKCLLSDNGGEFDNASIKNVLDTHGIAQRLVTPYTPEQNGVSERENRTLVETARSMMYAHEPLPQVLWAELINTAAYILNRTGPTSLDKSSHELWYGKKPIIKHLRIIGSIAYVHIPKQKRRKFDKKAIKGRLIGYDEDCYRIWVTDGKHSTLVRSRDVIFDEKPLPICNSEIPKTEVETREYPITITPNTNLEIEVAIPEQTHVHEGDTTTETNSNDHDHVLEGEESDQVLYEDHDQEDETTVPEELFYDAEPPPTGYNLRDRSLIRRPERLRDYVCITETFPNNFADAMKRDDREEWQRAMDSELKSFEDLNVWTPCALAKGRKALPCKWVLRIKRNPDGTIDKYKARLVVKGYRQRKGVDYDQTFSPVARLTTVRALLSVSAHENLHLVQFDVCTAFLNGKLEEEIYVQLPEGCNLTEGTSTVFKLNRSLYGLKQAPRCWNSCFQEILLDMNFKQSEADCCLYSREVNGKKLLITLYVDDAIRYSGGTVSWISQRQTSVAISTTEAEIVAASEAGRELMWLARLYQALTTIADVPVLHVDNEAAVRLAHNPEFHKRTKHIRLRHFYVRELVTEGICNVVRIGTKDQVADILTKPLPRTSYAVLRQALGLCTM

Uniprot

B3Y003   A0A1Y1KNM9   A0A0V1B5K0   A0A0V1B5A2   A0A0V1M1K0   A0A0V0TK20   + More
A0A0V0TK25   A0A0V1NHV8   A0A0V1DTZ3   A0A0V1IPN2   A0A085MSN1   A0A0N5E2R3   A0A085N6E0   A0A0V1G2I5   J9LCG1   A0A085NBL2   A0A1Y1NHZ0   A0A1Y1LDU4   A0A1Y1KR09   A0A0J7K744   K7JBX1   A0A2J7QWT7   A0A1Y1LCN3   A0A1X7U495   A0A0P6AI73   K7JBT3   A0A1Y1K5W6   A0A1W7R6C8   A0A0P6B8Y5   A0A0P6APU8   A0A1Y1JZX1   A0A0P5D6G1   A0A0N7ZJE6   A0A182GA29   A0A182GSW5   A0A0J7K9W0   A0A0P6IXK4   A0A0N7ZV66   A0A0J7KI47   A0A0A9YB53   A0A0A9W6P7   A0A0P5AJS8   K7JAW3   A0A2M3YZL7   A0A0A9YMV4   A0A2M4CV35   A0A2M3YZL3   A0A0P6JS54   K7J7M6   A0A182G1G7   A0A182GZN1   A0A0J7KDE2   A0A0P6GQB1   A0A1W7R6C3   A0A0P6HAZ4   B6V6Z8   A0A0P6IW88   A0A1Y1N3X2   A0A2S2P896   A0A3S3NIE3   A0A0J7K689   A0A0J7KBA1   A0A2M4CWP1   A0A0P6ITU5   B8YLY4   A0A2N9ETM3   A0A251T6N3   A0A2A4JRI1   A0A2N9IWX1   B8YLY5   A0A0J7K6U3   A0A0J7K763  

Pubmed

28004739    24929829    20075255    26483478    26999592    25401762    + More
19656907    28538728   

EMBL

AB378753    BAG68376.1    GEZM01078128    GEZM01078127    JAV63002.1    JYDH01000102    + More
KRY32233.1    KRY32232.1    JYDO01000312    KRZ65659.1    JYDJ01000235    KRX39371.1    KRX39370.1    JYDM01000206    KRZ83588.1    JYDR01000237    KRY65040.1    JYDV01000213    KRZ24707.1    KL367684    KFD60227.1    KL367545    KFD65036.1    JYDT01000007    KRY92484.1    ABLF02020242    ABLF02020246    ABLF02042026    KL367520    KFD66858.1    GEZM01007166    GEZM01007165    JAV95327.1    GEZM01063217    JAV69187.1    GEZM01078105    JAV63008.1    LBMM01012672    KMQ86059.1    AAZX01004352    NEVH01009420    PNF33053.1    GEZM01063091    JAV69316.1    GDIP01034138    JAM69577.1    AAZX01010628    AAZX01013403    GEZM01096605    JAV54776.1    GEHC01000927    JAV46718.1    GDIP01019956    JAM83759.1    GDIP01039936    JAM63779.1    GEZM01096656    JAV54693.1    GDIP01162319    JAJ61083.1    GDIP01239569    JAI83832.1    JXUM01155348    KQ572178    KXJ68066.1    JXUM01085595    KQ563513    KXJ73717.1    LBMM01010801    KMQ87218.1    GDUN01000214    JAN95705.1    GDIP01209409    JAJ13993.1    LBMM01007046    KMQ90088.1    GBHO01016859    JAG26745.1    GBHO01043059    JAG00545.1    GDIP01198316    JAJ25086.1    AAZX01023229    GGFM01000952    MBW21703.1    GBHO01012744    JAG30860.1    GGFL01004951    MBW69129.1    GGFM01000953    MBW21704.1    GDUN01000696    JAN95223.1    AAZX01002176    AAZX01002186    AAZX01006620    AAZX01018918    AAZX01023250    AAZX01023349    JXUM01136904    KQ568499    KXJ68982.1    JXUM01099923    KQ564528    KXJ72133.1    LBMM01008998    KMQ88473.1    GDIQ01169648    GDIQ01030305    JAN64432.1    GEHC01000928    JAV46717.1    GDIQ01031455    JAN63282.1    FJ238509    ACI62137.1    GDUN01000697    JAN95222.1    GEZM01013472    GEZM01013471    GEZM01013470    JAV92539.1    GGMR01012789    MBY25408.1    NCKU01012701    RWS00004.1    LBMM01012772    KMQ86003.1    LBMM01010133    KMQ87653.1    GGFL01005562    MBW69740.1    GDUN01000694    JAN95225.1    FJ544853    ACL97384.1    OIVN01000313    SPC78143.1    CM007900    OTG06758.1    NWSH01000816    PCG74073.1    OIVN01006239    SPD28653.1    FJ544854    ACL97385.1    LBMM01012492    KMQ86193.1    LBMM01012449    KMQ86217.1   

Proteomes

UP000054776    UP000054843    UP000055048    UP000054924    UP000054632    UP000054826    + More
UP000046395    UP000054995    UP000007819    UP000036403    UP000002358    UP000235965    UP000007879    UP000069940    UP000249989    UP000285301    UP000215914    UP000218220   

PRIDE

B3Y003   

Pfam

PF13976   gag_pre-integrs        + More
PF07727   RVT_2
PF00665   rve
PF00098   zf-CCHC
PF13696   zf-CCHC_2
PF13961   DUF4219
PF14244   Retrotran_gag_3

Interpro

IPR025724   GAG-pre-integrase_dom        + More
IPR036397   RNaseH_sf       
IPR001584   Integrase_cat-core       
IPR039537   Retrotran_Ty1/copia-like       
IPR012337   RNaseH-like_sf       
IPR013103   RVT_2       
IPR036875   Znf_CCHC_sf       
IPR001878   Znf_CCHC       
IPR025829   Zn_knuckle_CX2CX3GHX4C       
IPR025314   DUF4219       
IPR029472   Copia-like_N       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       

Gene 3D

3.30.420.10    

ProteinModelPortal

B3Y003   A0A1Y1KNM9   A0A0V1B5K0   A0A0V1B5A2   A0A0V1M1K0   A0A0V0TK20   + More
A0A0V0TK25   A0A0V1NHV8   A0A0V1DTZ3   A0A0V1IPN2   A0A085MSN1   A0A0N5E2R3   A0A085N6E0   A0A0V1G2I5   J9LCG1   A0A085NBL2   A0A1Y1NHZ0   A0A1Y1LDU4   A0A1Y1KR09   A0A0J7K744   K7JBX1   A0A2J7QWT7   A0A1Y1LCN3   A0A1X7U495   A0A0P6AI73   K7JBT3   A0A1Y1K5W6   A0A1W7R6C8   A0A0P6B8Y5   A0A0P6APU8   A0A1Y1JZX1   A0A0P5D6G1   A0A0N7ZJE6   A0A182GA29   A0A182GSW5   A0A0J7K9W0   A0A0P6IXK4   A0A0N7ZV66   A0A0J7KI47   A0A0A9YB53   A0A0A9W6P7   A0A0P5AJS8   K7JAW3   A0A2M3YZL7   A0A0A9YMV4   A0A2M4CV35   A0A2M3YZL3   A0A0P6JS54   K7J7M6   A0A182G1G7   A0A182GZN1   A0A0J7KDE2   A0A0P6GQB1   A0A1W7R6C3   A0A0P6HAZ4   B6V6Z8   A0A0P6IW88   A0A1Y1N3X2   A0A2S2P896   A0A3S3NIE3   A0A0J7K689   A0A0J7KBA1   A0A2M4CWP1   A0A0P6ITU5   B8YLY4   A0A2N9ETM3   A0A251T6N3   A0A2A4JRI1   A0A2N9IWX1   B8YLY5   A0A0J7K6U3   A0A0J7K763  

PDB

3S3N     E-value=0.00261656,     Score=101

KEGG

105841853    no KO assigned | (RefSeq) uncharacterized LOC105841853

GO

GO:0003676   GO:0015074   GO:0000943   GO:0008270   GO:0006384   GO:0016021   GO:0042555   GO:0006260   GO:0004672   GO:0048384  

PANTHER

PTHR11439  

Length:

1167

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00254

Exp number, first 60 AAs:

0.00033

Total prob of N-in:

0.00003

outside

1  -  1167

 

 

Pi

213.620554

Theta

14.029273

Tajima's D

0.890794

CLR

0.885463

CSRT

0.636518174091295

Interpretation

Uncertain