SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04220
Pre Gene Modal
BGIBMGA004760
Annotation
PREDICTED:_uncharacterized_protein_LOC105842707_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.224
 

Sequence

CDS
ATGAGGAAGGATATCAAGAACTTCCTGGAGGTTCAGTCGGATAGGGGCCAGCGTGTCCTCTACGAGCTCAGCAAGCGGATGACGCGTTTAGAAGCAGCAAGAAAACCACTGTCACCCACAGCTTCGACTTCACCAGAATATGAAGATCACATTCTGGAACGCCTGGGTCAAGTGGAAATAAACCTGCAGACGCGGCTAAACGACCTGGAAGCCAAAATGACCTCATCCTTCGAAGAACAAAATGTTCTCCGCGACGACGGCGGCGCTGACATCATCGACAAAATTATCGACAGAGTCGACGAGGTCGGAGGGGCCATTGACAAAACCGCCGAGAGCGTCAGAGTCATGGTCTGCTCCCAGAACACCGTCGGCGACAAGCTCGATCATATTGCCGCTGATGTCGCGTCAGCAAAAACTGCAATCGACATAGTCGCTCAAGGTGTGGTCACAGGCGAGCAAAGACCTATCTCCAGGTCGTATGCCAACGTCGCGGCCACCAAGTCAGGGCATCGGCCGGCACTACACTCGATGGCGGTCACCCTCGAAGGCAATCAGGAGACTGCCGACGAGGTGCTTGAGAGAGTGAGGAAGGCGGTCGATGCCAGGGGTACTGGCCTGAAAATAAGCAAGGTGCGCAAAGCAAAAAATCAAACAGTTATTTTAGGGTGTGACACCGAAGCGGAACTATACAAGGTGAAAGAAACGATTGAAAGCCGGGGGAAGGGTTTAATTGTTTCCCGCATGAAAAATAAAAACCCGCTTGTCATCCTAAAAGATGTCTTCCTCCCGAGTGACGACGAGGAGATAATTAAAGCGCTTCATATTCAGAACGAGGATATATTTAGGGACTTGTCTCAGGAAGATAAAGAAACGACCATAAAGTTCAAGAAGAGGACAAAAAATCCCAAAACGGCGCACGTCATTGTCCAGGTTGGTCCCGTGGTATGGCAAAGGATGACGGAGGCTGGGGCCCTCTACCTGGACCTGCAAAGGATCAGAGTCGAGGACCAGTCTCCGCTCATCCAATGCACTAGGTGCCTCGCATTTGGACATGGTCGAAAATTTTGCACCGAGAGTGTGGACAGATGCAGTCACTGTGGAGGACCGCATCTGCGCGAGAAATGCGCAGACTTCATCGCAGGGACCGAACCGCAGTGCTGCAACTGCTCACACTCTGGGTTGCGGAAGGCCGACCATAACGCTTTTAGCGCCGAATGCCCGCACAAGAACACTTACATGAACCACAAACAGTAA
Protein
MRKDIKNFLEVQSDRGQRVLYELSKRMTRLEAARKPLSPTASTSPEYEDHILERLGQVEINLQTRLNDLEAKMTSSFEEQNVLRDDGGADIIDKIIDRVDEVGGAIDKTAESVRVMVCSQNTVGDKLDHIAADVASAKTAIDIVAQGVVTGEQRPISRSYANVAATKSGHRPALHSMAVTLEGNQETADEVLERVRKAVDARGTGLKISKVRKAKNQTVILGCDTEAELYKVKETIESRGKGLIVSRMKNKNPLVILKDVFLPSDDEEIIKALHIQNEDIFRDLSQEDKETTIKFKKRTKNPKTAHVIVQVGPVVWQRMTEAGALYLDLQRIRVEDQSPLIQCTRCLAFGHGRKFCTESVDRCSHCGGPHLREKCADFIAGTEPQCCNCSHSGLRKADHNAFSAECPHKNTYMNHKQ

Summary

Pfam
PF00098   zf-CCHC
Interpro
IPR001878   Znf_CCHC        + More
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF57756   SSF57756       

Ontologies

Topology

Length:
417
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.0016
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01957
outside
1  -  417
 
 

Population Genetic Test Statistics

Pi
234.519397
Theta
161.189141
Tajima's D
2.892309
CLR
0.206608
CSRT
0.974301284935753
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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