Silkworm Genome Informatics Database

Gene

KWMTBOMO04219

Pre Gene Modal

BGIBMGA014553

Annotation

hypothetical_protein_TcasGA2_TC034914?_partial_[Tribolium_castaneum]

Location

Bomo_Chr8(-):42434-47615 View in EpiBrowser

Location in the cell

Nuclear Reliability : 2.824

CDS

ATGGAAGAGGAAGAACAGCCAGTTATCACCGCGTACTCCGGTGATAACGACTACAGTGATCAAGGAAGTATAGGAGAGAGCTTTGAGGTTTCCAGTGTGACGATACTGGAGAAAGACTGGGAACAGGTGGAAGACCCGTTTAAAAGAAGGGAGTCAATCAAACGGACGCCCCCAGGGGCATTAAAAGAACTTAAGACACCCAGTAAAATGGCGGATAGCGGCACGCTAGTACAGGAAGATGTCTTTTTAACTCCTAAAGAAAAGATAGCTGAAGTAGCGGAAAATACACCAATGAGGCCAAAAAAGCGGAAAAAACTGTCCAGTCCGATAGTGATCCAACCCGTTGAAGCAGAGCCACCAGTGGAGTACCTGAAACTAAAAACTAAAATAGATAAGTTGGTAAAGTTCGGGAAAGAAAATAAAAATGTGCATCGGCAAATTAAGGACTTACTGATTGACCTCCCAGGACTGATGGAGCGGGTAACTATAAGATACAAGGACGATACAAATAAACCAACCGAAATGGAGCAAAAGTTTGAAGCCTACAAAAAGGAGCAAGAAGAAAAGATCAGGAGACTAGAACAGGAAATTAAGGAACTTAAGACACTGCATAAACGAGAGACTGGAGAGAACCAACTTTTCAAGCTTGACGATCAGATGATTAACAGCTATGACGACTTCTCGAAAGTTTCAAGCATGGACTGGACGCAGGATAGTTACAAAAGGACAAAGATAGGCCATGGAGACATCTTTCTGAGAACCACCGACTGTACAGTCTACTTCTGTGATGAGAGGGAGAAAGCACACTCGAGGCTGACAAGAAGGGTGCTAAGCCGATATCCAGAAGTGACTAAGAGCGAGAAGATGGCATGCGCAGGAGGAGCATACGTGACGGTGGAACGAGAAACCACCATCAAAACAAAAGAGGGGAGACAGACAGACAAAACGAGTGCTGTGATCATGTTCCATGATGCGACCAAACAGGACGGCCGAAGTCAAAAGGACATGTATGAGCTCCTGTCCGAATTAACCAAAATAGTGGAAGAGATGGGAAACAAAGAGCTGACTATTATAAAGCCCCAAGGAATCGATACAGGTGTAATAAGAAAGATGTTAGAAGTACTGTTCCGTGGAAAGGACATCGAATTAGAATTAAGGACACCTAAAAAAGGAGAAAACACAAACAATACGGAAACAAGAAAACGGGACGAGGTAATAGTCATAGAAGGAGGGACAACTACTTATGCGGACACCGTAAAGAGGCTAAAAGAAGGAATAAAAGGGACCGCATCCCTAGAAAACATAAAAGGTGTAAAAAAGACAGCCAAGGGACAAGTACTGGTAAGAGTGATGGGAAATATTGAGGAGATGACTGGAAAAATAAGAGAAATGATGCGAGATAGAAAGATAAATATAGACCGAGGGAAAGCCGCGCACGACCTACTTCTGGCAACTGCGAGCAGTATGAGCGCGGATCTAGTGATGCTATCTGAACCCAATAGAAAATTGGCAAAAGCTGCTGGATGGGAGTGTGACACCAGGGGAGATGCAGCCCTAGTTCTTCTTAATAAAACACTGACGGTTTCTGAAATTTATAGGGGGAAGGGATTCGTTGGGTTCAAGATGAAGCACTTTGCCGCGTTCAGCTGTTACATCTCTCCCAACTGCAGTTTTGAGGAGTTCAAAGCAGACGTCGATGAGCTTTGGACACTACTAAAAAAACAAAAGACACCGATCCTAGTGGCAGGAGATTTTAACTCTGCATCGAGAGCGTGGGGCAGTAAAGCAACCAACAAAAGGGGCCACTACCTGTTGGAAATGGTGGCGGACCTTGACATTGTCATCATGAATGAAGGCGTGACCCCAACTTTTGAAAGAGGAGACAGAACATCTAGGCCCGACATCACCATGGCCTCTGAAACGCTGGCAGGCAAGATTAGTAATTGGCAAGTGCGCGACGAGGAGACAATGAGCGGACATAAATATATAGCCTACGAGATAAAGCATGTATTGCCTCTATCCCAGTGCCATGCACAGATGAAAAGGTGGAACCTCCAAAGGCTGGACGTAGATAAGTTCAGTAAAAGCCTGAAAGGAGCGCAGATCTCGACTCCCATGGAACTGGTGCAGGCTACGACGGCAGCGTGTGATGCTTCTATGCCAAAGCAAAACAACCGCAAGAAAAAAGGAGTCTACTGGTGGAACAAGGAAATTGCGGAAGCAAGGAAGGAGTGTTTGAAATGCCGAAGGAGGTACACAAGGAATAACAAAAAGCTAGGAAAAGGGAAAGACAGGGAAAATAACGAAGAAAATGAACACAAAAAGCAGTATAAGGAAGCGAAACTGGAGCTACAAAGACGAATATGGAAAGCGAAAGACGATAAATGGAGGGAAGTGTGCGAGGAAGTCGACAATGATATATGGGGACTGGGATACAAAATAGTGTCAAAAAAGCTACGCGGAAACTCACCGATAAATATGGGCATGGCACAAATTCAAAGCATAGCTGATGGCCTCTTCCCGGAACACATAGATTTCGAACGGAAAACGAAACCGTCACAGGAGTTCCCAGAGGTGACCGAGGAGGAGATCATCCAACTAAAAGCTCGCATAAAGCTCAGGAAAGCCCCAGGGCCCGACCGGATTCCGCCGGAGATAGTGACTCTAGCAGTAGCAGTAATTCCAGACAGGATAAGGCTTGTGTTGCAGAAGGTGCTGGAGTCTGGCGTCTTCCCCAACAGCTGGAAAACAGCCAGACTAGTCCTGCTAAGAAAACCAGGCAAACCCGCTGAAGATCCTGCGGGGCACAGGCCGCTATGTCTACTGGACTGCTACGGAAAGCTGCTGGAGTCGCTGATCCTAGGCAGAATAGAAAAACAACTAGTACAATCGGACTGTTTACAAGATTCGCAGTACGGGTTCAGAAAGGGGAGGTCCACAGTGGATGCAGCCAACAAGCTACTTGAGATAGCGGAAGACGCGAGACGAGGAACCCACCGCACCAGAAGAATCTGCGCAGTAGTGGCCCTCGACGTCCGTAATGCTTTCAATTCTGCATCGTGGGAGCTCATCCTGGAGGAAATGGCTGCAATAGGTATGCCTCAATACATCTATAATATCATAAACAGCTACCTCCAGGACAGATGCATCATACTGACAGACGCTGAGGGAGGGGTTGTAGTGAAAAAGGTTACCGGTGGTGTTCCGCAGGGGTCGATACTGGGCCCCACGCTGTGGAACATACTGTATGATGGGGTACTGCGCCTCGAACTGGGGGATGGGGCACAATTAATAGGCTTCGCGGACGATTTAGCTCTGGTGGTGTCAGCAAAGAAGGAAGCAGAACTAATGGCAATAACGAATGTAGCCCTACAAAAGATCAGCGCTTGGATGAAGCAAAAGCGGCTACACTTGGCCCCAGAAAAGACCGAGGCAATTGTGCTAAGTGGGCGAAGAAAGCTTAGCGAGATTTGCTTTACCCTCCAGGGCGTCAGGGTGGTTCCAACCGACAAACTGAAATACCTCGGGTTTTGGTTTGACAAAAGTCTGAAGTTCGGCAAACACATTGAAGAAACAACTGGTAAAGCCGAAAGACTGACGACCGCCCTTGGCCAAATCATGCCCAGGAAAGGAGGGCCGAGGTCGAGCAAGCGCAGACTATTGGCGTCCGCAATACAATCTGTGATGTTATATGGAGCACCGGTGTGGGCAAAGGTAATGAATGTAGCGAAGTACAGGAACATGTATAGCAAAGTGCAACGACAGCTGGCAATACGCATCTGTGGAGCTTACCGTACCATATCGCTAGACGCCGTCTTGGTGATAGCGGGCCTGATACCGATAGAACGGCTAGCAAAGGAACGGCAACGCTACTACCACGAGGGGACAAGAACGAGAGAAGAGGAAAGAGCACATACAATAAAAGAATGGGAACGAGACTGGCAGAAGGAGGGAAAAGGTAAGTGGACTCGTACAATCATACCCAACCTTAGGCTCTGGATGGAACGGAAACATGGCGAAACCGACAGACTGCTGACACAGGCCCTAAGTGGGCATGGAGTTTTCAACACTTACCTGCATTCAATAGGGAAAGCAGAAAGCGCAAGTTGCCCATACTGCGAACATGTTGATACACCGGAACATGCCCTATTTCAATGCATAAAGTTCACAGAACTAAGAGGGAAAACGGAGGGAAGTGACGGAAAGGTGACTGTGGAAAACCTGATGGTGAGAATGATCCATAGTAAAGAAGAATGGGATAAATATGCGGGAATGCTCAAAGAGATAATGAGAGTGCGGGAAAAGGACGAAAGACTAAGGCAAGAATCTATCTATAATAATATATAA

Protein

MEEEEQPVITAYSGDNDYSDQGSIGESFEVSSVTILEKDWEQVEDPFKRRESIKRTPPGALKELKTPSKMADSGTLVQEDVFLTPKEKIAEVAENTPMRPKKRKKLSSPIVIQPVEAEPPVEYLKLKTKIDKLVKFGKENKNVHRQIKDLLIDLPGLMERVTIRYKDDTNKPTEMEQKFEAYKKEQEEKIRRLEQEIKELKTLHKRETGENQLFKLDDQMINSYDDFSKVSSMDWTQDSYKRTKIGHGDIFLRTTDCTVYFCDEREKAHSRLTRRVLSRYPEVTKSEKMACAGGAYVTVERETTIKTKEGRQTDKTSAVIMFHDATKQDGRSQKDMYELLSELTKIVEEMGNKELTIIKPQGIDTGVIRKMLEVLFRGKDIELELRTPKKGENTNNTETRKRDEVIVIEGGTTTYADTVKRLKEGIKGTASLENIKGVKKTAKGQVLVRVMGNIEEMTGKIREMMRDRKINIDRGKAAHDLLLATASSMSADLVMLSEPNRKLAKAAGWECDTRGDAALVLLNKTLTVSEIYRGKGFVGFKMKHFAAFSCYISPNCSFEEFKADVDELWTLLKKQKTPILVAGDFNSASRAWGSKATNKRGHYLLEMVADLDIVIMNEGVTPTFERGDRTSRPDITMASETLAGKISNWQVRDEETMSGHKYIAYEIKHVLPLSQCHAQMKRWNLQRLDVDKFSKSLKGAQISTPMELVQATTAACDASMPKQNNRKKKGVYWWNKEIAEARKECLKCRRRYTRNNKKLGKGKDRENNEENEHKKQYKEAKLELQRRIWKAKDDKWREVCEEVDNDIWGLGYKIVSKKLRGNSPINMGMAQIQSIADGLFPEHIDFERKTKPSQEFPEVTEEEIIQLKARIKLRKAPGPDRIPPEIVTLAVAVIPDRIRLVLQKVLESGVFPNSWKTARLVLLRKPGKPAEDPAGHRPLCLLDCYGKLLESLILGRIEKQLVQSDCLQDSQYGFRKGRSTVDAANKLLEIAEDARRGTHRTRRICAVVALDVRNAFNSASWELILEEMAAIGMPQYIYNIINSYLQDRCIILTDAEGGVVVKKVTGGVPQGSILGPTLWNILYDGVLRLELGDGAQLIGFADDLALVVSAKKEAELMAITNVALQKISAWMKQKRLHLAPEKTEAIVLSGRRKLSEICFTLQGVRVVPTDKLKYLGFWFDKSLKFGKHIEETTGKAERLTTALGQIMPRKGGPRSSKRRLLASAIQSVMLYGAPVWAKVMNVAKYRNMYSKVQRQLAIRICGAYRTISLDAVLVIAGLIPIERLAKERQRYYHEGTRTREEERAHTIKEWERDWQKEGKGKWTRTIIPNLRLWMERKHGETDRLLTQALSGHGVFNTYLHSIGKAESASCPYCEHVDTPEHALFQCIKFTELRGKTEGSDGKVTVENLMVRMIHSKEEWDKYAGMLKEIMRVREKDERLRQESIYNNI

Uniprot

A0A139W8G2 A0A139W942 Q868S6 A0A2M4BB78 A0A2M4BB89 A0A2M4BBA0 + More
A0A2M3Z1C1 X1WXT5 Q868T0 A0A2M4AK35 J9KNN8 A0A2M4CJ33 Q868S8 A0A2S2P7D1 V9GZD3 Q868R2 Q868R0 A0A2M4CKD9 Q868R4 A0A2M4CJ59

Pubmed

18362917 19820115 12644555 1328871

EMBL

KQ973343 KXZ75566.1 KQ972691 KXZ75805.1 AB090814 BAC57904.1 + More
GGFJ01001164 MBW50305.1 GGFJ01001165 MBW50306.1 GGFJ01001166 MBW50307.1 GGFM01001554 MBW22305.1 ABLF02004854 ABLF02041317 AB090812 BAC57900.1 GGFK01007771 MBW41092.1 ABLF02023257 GGFL01001192 MBW65370.1 AB090813 BAC57902.1 GGMR01012748 MBY25367.1 M93690 AAA29363.1 AB090821 BAC57918.1 AB090822 BAC57920.1 GGFL01001190 MBW65368.1 AB090820 BAC57916.1 GGFL01001189 MBW65367.1

Proteomes

UP000007266 UP000007819

Pfam

PF00078   RVT_1        + More
PF14529   Exo_endo_phos_2
PF00098   zf-CCHC
PF13966   zf-RVT

Interpro

IPR005135   Endo/exonuclease/phosphatase        + More
IPR036691   Endo/exonu/phosph_ase_sf
IPR000477   RT_dom
IPR036875   Znf_CCHC_sf
IPR001878   Znf_CCHC
IPR026960   RVT-Znf
IPR016067   S-AdoMet_deCO2ase_core

SUPFAM

SSF56219   SSF56219        + More
SSF57756   SSF57756
SSF56276   SSF56276

Gene 3D

3.60.10.10

ProteinModelPortal

A0A139W8G2 A0A139W942 Q868S6 A0A2M4BB78 A0A2M4BB89 A0A2M4BBA0 + More
A0A2M3Z1C1 X1WXT5 Q868T0 A0A2M4AK35 J9KNN8 A0A2M4CJ33 Q868S8 A0A2S2P7D1 V9GZD3 Q868R2 Q868R0 A0A2M4CKD9 Q868R4 A0A2M4CJ59

PDB

1WDU E-value=1.15787e-08, Score=148

KEGG

NA

GO

GO:0003676 GO:0008270 GO:0003964 GO:0008295 GO:0004014

Length:

1448

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

14.16481

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00000

outside

1 - 1448

Pi

43.958721

Theta

133.087899

Tajima's D

-1.431751

CLR

250.619481

CSRT

0.0709964501774911

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree