Silkworm Genome Informatics Database

Gene

KWMTBOMO04213

Annotation

PREDICTED:_uncharacterized_protein_K02A2.6-like?_partial_[Papilio_polytes]

Location

Bomo_Chr7(+):13837160-13841471 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.832

CDS

ATGGAACACGCGCGTCCTCCAGCAGAATTATCACTCGATGGCGGTCCGGCTGCACGCTCCGAGGCGTGGCGGCAATGGCGGAAGCTGTTCGAAGTATTTCTTAAAGCGTCTGGAGTGAGCAAAGAGCCTAAAGAAGTTCAGGCTAGTTTGTTGGTGAATCTCATAGGATCGGCCGGTTACGAGGTTTATACGACCTTCACTTTTAACGAAGGTGAAAGTGAGGACGATATCGGCTGTGTTCTGAATAAGTTCGACAAGTACTTTGGAGCAAAACCGAATATCATAGTAAGACGGTATAAGTTCTTCACCCGTGATCAAGAAGATGGCGAAAATATTGACCAATACATAACCGCATTGAGGGTACTCAGTCAGCAATGCGAATTCAGTGAATTACACGAAAGCTTGTTACGTGATCGTATCGTATGCGGTGTCAATAACAACACGGTGAGAGATCGACTTCTTCGCACTGATGATCTTACACTAGTGAAGGCCTTACAACTCTGTCAGGCGGCCGAGATGTCTAAAGAGGACAGTAAATACATTAACTGCGCTGCGGACAGTGTGCAGGTGTCTGCAGTTCAGAACAGAAGCGGTGAACGAAGCGGTCAGCGCGCGAGAGGAGTACGCGGCGCAAGAGTTGGCAGTAACGGCGGGCAGAGAACAGCTCGCAGCGCCTGTCAGCGATGTGGAAACAGCCGGTGTCTAGGCGGTGAACGTTGTCCAGCAGTTAACGCGATGTGTTTTGTGTGCGATCAGAAAGGGCATTTTTCGCGAGTATGTGTGCAAAAGAAAGCGATTCGTAAGGTATTAAATTTGAGTATGGATACTGCGAGCAGTGATAGTGAAGAAAAATGCAAAGAAATGTTCTATGTGAATACGATCGCGGGGAACAATAACATATACTTGTTTCAAGGTCTAGGAAAATTACCTGGTAAATATAGTATTGTAATAAATAAAAACATACAGCCTGTTGTTAGTCCAACGAGAAAAATTCCCTTAGGAATTAAAGGTAAATTGTTGGACGAGTTACGTAGAATGGAAGAGTTAGGTGTGGTTAGAAAGGTCACACACCCGACCGATTGGGTGAATGCAATTGTTTTAATCGCAAAAAAGGACGGTGGCATTCGTGTATGTTTAGACCCCCGTCCGCTGAACCGCGCGGTGCGGCGCGCCCAGTATACGTTGCCGACAGTGTCTGAGCTGGCAGCGCGTCTGCGCGGTGCCACTGTGTTCAGCGTGCTCGACGCGCGCTGTGGGTTCTGGATGGTACAGATAGACGACGCCAGCGCCGATCTGTGCACCTTCGGTACTCCGTTTGGCCGGTATCAATTTTTACGTTTACCGTATGGGATAAACTGTGCGCCTGAAGTGTTTCATGCTAAACTCAGGCAGCATTTGGAAGACTTAGATGGTGTGGAGTCTTTCATCGATGACGTCATAATATGGGGACGCACAAAGGAAGAGCATGATAGGAGGTTGGAGTGCCTTTTACAGCGTGCTAAGGAAGTAGGCATAAAGTTTAATCGCGATAAATGTAAATTCGGTGTACCCGAAATTACTTACCTAGGTCATAAGTTCGATGCGAATGGTATGCGGGCAGATGACTCAAAAGTCAAAGCTATTTTAGAAATGCCTTATCCGAAAGATAGGAAGGCGTTAGAGAGATTTTTAGGCATGGTTAATTATTTAGCTAAATTTATTTCTAATTACTCTGAGAGTGTGAATGTGTTACGGACCTTACTGAAAAAGGAATCCGAGTGGTTCTGGGAATCGCATCATTCCGAAGCTGTGGACAAGCTAAAAATGAAGCTTAGCCGTGCGCCCGTGCTGGCACTGTACAGTGAGAGTGTACCGATAGTAGTGTCGGTGGACGCATCCAGTGTGGCGCTGGGTGCCGTGCTGCTACAGGACGGTCGTCCGGTAGAGTTCGCATCACTCACGCTCACCGACACTCAGACTAGGTATGCACACATAGAAAAAGAAATGCTAGCTATTGTGTTTGGGATTGAGCGGTTCAGGCAGTATATTTACGGTAGGTCCGACGTAACCGTACATACTGATCACAAGCCCCTAGAAGCATTATTCAACAAACCACTAGTTTCGGTTCCAGCTCGGTTGCAGAGGATGATGATGAGAGTGCAAGGGTATGATTTCAAAGTTGTATATACTCCGGGTAAAAATATGTATATTGCAGATACGCTATCTCGGGCTCCTTTGAATGAAATGATGAATGATCGGGTTTCTTCTGAAGTTAACGTGCAGACGTGTTTCATGACAGAAAATATACCGTATAGTAACAAAAAGTTGGAGGTAATTAGAAAAGAAACGGAGACGGACAGTGATTGTCGGTGTTTAATTAAGTACATAAAGCATGGCTGGCCAAAAAATAGACGTGATGTAAATGACAAAATAAAAGTGTTCTGGCCGTATCGCGAGGAACTTCATTATATAGAAGGGATTATTTTCAAGGGGGAACGTGTCTTTATACCCCGTGCTTTACGAGACGACATGTTGTTGAGGGTCCACGAGGGACATTTAGGTATCGAAAAATGCAAACGACGCGCGCGTGAAGTAATGTTTTGGCCCGGACTGTCTGAGGATGTGGAGCGAGAGGTGCGGCGGTGCGCAGCGTGTGCGTTACACGCGCCTCGACCGCGCCGGCAACCGCTTCTACAGCACCCTGTGCCCGCGCTACCCTGGCATAAACTAGCCTCCGACATTTTTGAATATAGAAAGAAAAGCTATATTATCCTAGTCGATTACTTTTCTAACTACGTAGAAGTCGGACAGTTGGCGAATATTAGCTCTAAGCATGTTATTAATTTTTTGAGGGAACAGTTCGCGCGTCACGGCATTCCAGCACAATTAGTGACTGATAATGGTCCAGCGTACAGCTCACGAGAATTTAGAATGTTCATGCATGATTGGGAAGTACATCATGAGACGTCATCGCCGCATTACCCACAGTCGAATGGTAAAAGTGAAAGGACAGTACAGTGTGTGAAAAATCTGCTTAAAAAATGTATAGATTCAGGTCAGGATTTTTATTTGTCTTTGTTGAATTTTAGAACAACACCACGTAATGGATTGGATTCGCCTGCACAAATTCTCATGGGTAGACGTTTAAATACAAAATTACCAACTACTGCAGAGCTATTAAGGGAAAAAGTAGATAATGAAAGGAATTACAAAGCTATAATGATGAACAGAGAGAAAATTAAAAAACATTATGATAGATCGGCTAAATTGTTAAAACCCTTGTTATCGGGTGATAAGGCGACTCTAATTGGTAACGGCGTTAGGAAACCGGTGACAATAGTGGAAGGTACATCGCAACCTCGCTCCTATATTATCGAAGATGACTGCGGCAGTCGTTTTCGGCGTACTCGAAGTCAGTTGGTTGTGCGTACAACAGACCATAAAAAACGTGAAGGAAAGTCACTGAAACAACCGATTGTAAAAATTGAAAATAGCAGGACACCAACTGTGATTACGACAACTGTTCGTAGGCGTCGACAAAAGTCAATAAGTAGTAGGCAACTGGGAACCAGTATTGACAATGAGAGTGACCCACAAGCAAGTGGACAGGTCAGTCCGACACAGAGCACAACCACCGATATTCAGTCTACTCAACTTGACGTCAGTGACGATTACGATAGTCCAGCTAGCTTTAGTGATCAGTTGTGTGCGCGGTCGCCAGCGTCGCCACCCGCGGTTCCTATTACAAGGTCTAAGGAAAGAACTGCACGAATGCTAAAAGAATTCTTTTTCGAGTGTGATTAG

Protein

MEHARPPAELSLDGGPAARSEAWRQWRKLFEVFLKASGVSKEPKEVQASLLVNLIGSAGYEVYTTFTFNEGESEDDIGCVLNKFDKYFGAKPNIIVRRYKFFTRDQEDGENIDQYITALRVLSQQCEFSELHESLLRDRIVCGVNNNTVRDRLLRTDDLTLVKALQLCQAAEMSKEDSKYINCAADSVQVSAVQNRSGERSGQRARGVRGARVGSNGGQRTARSACQRCGNSRCLGGERCPAVNAMCFVCDQKGHFSRVCVQKKAIRKVLNLSMDTASSDSEEKCKEMFYVNTIAGNNNIYLFQGLGKLPGKYSIVINKNIQPVVSPTRKIPLGIKGKLLDELRRMEELGVVRKVTHPTDWVNAIVLIAKKDGGIRVCLDPRPLNRAVRRAQYTLPTVSELAARLRGATVFSVLDARCGFWMVQIDDASADLCTFGTPFGRYQFLRLPYGINCAPEVFHAKLRQHLEDLDGVESFIDDVIIWGRTKEEHDRRLECLLQRAKEVGIKFNRDKCKFGVPEITYLGHKFDANGMRADDSKVKAILEMPYPKDRKALERFLGMVNYLAKFISNYSESVNVLRTLLKKESEWFWESHHSEAVDKLKMKLSRAPVLALYSESVPIVVSVDASSVALGAVLLQDGRPVEFASLTLTDTQTRYAHIEKEMLAIVFGIERFRQYIYGRSDVTVHTDHKPLEALFNKPLVSVPARLQRMMMRVQGYDFKVVYTPGKNMYIADTLSRAPLNEMMNDRVSSEVNVQTCFMTENIPYSNKKLEVIRKETETDSDCRCLIKYIKHGWPKNRRDVNDKIKVFWPYREELHYIEGIIFKGERVFIPRALRDDMLLRVHEGHLGIEKCKRRAREVMFWPGLSEDVEREVRRCAACALHAPRPRRQPLLQHPVPALPWHKLASDIFEYRKKSYIILVDYFSNYVEVGQLANISSKHVINFLREQFARHGIPAQLVTDNGPAYSSREFRMFMHDWEVHHETSSPHYPQSNGKSERTVQCVKNLLKKCIDSGQDFYLSLLNFRTTPRNGLDSPAQILMGRRLNTKLPTTAELLREKVDNERNYKAIMMNREKIKKHYDRSAKLLKPLLSGDKATLIGNGVRKPVTIVEGTSQPRSYIIEDDCGSRFRRTRSQLVVRTTDHKKREGKSLKQPIVKIENSRTPTVITTTVRRRRQKSISSRQLGTSIDNESDPQASGQVSPTQSTTTDIQSTQLDVSDDYDSPASFSDQLCARSPASPPAVPITRSKERTARMLKEFFFECD

Uniprot

A0A3P8P6K4 A0A023EY86 A0A023EYB9 A0A1A8UGA0 A0A3P9HT22 A0A3B3C9X5 + More
A0A3P9AYU2 A0A3P8QAD1

Pubmed

25474469 17554307 29451363 25186727

EMBL

GBBI01004629 JAC14083.1 GBBI01004630 JAC14082.1 HADY01023773 HAEJ01006887 + More
SBS47344.1

Proteomes

UP000265100 UP000265200 UP000261560 UP000265160

Pfam

PF00078   RVT_1        + More
PF17919   RT_RNaseH_2
PF17921   Integrase_H2C2
PF00665   rve

Interpro

IPR000477   RT_dom        + More
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2
IPR021109   Peptidase_aspartic_dom_sf
IPR012337   RNaseH-like_sf
IPR041577   RT_RNaseH_2
IPR001584   Integrase_cat-core
IPR001969   Aspartic_peptidase_AS

SUPFAM

SSF50630 SSF50630 + More
SSF53098 SSF53098

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A3P8P6K4 A0A023EY86 A0A023EYB9 A0A1A8UGA0 A0A3P9HT22 A0A3B3C9X5 + More
A0A3P9AYU2 A0A3P8QAD1

PDB

4OL8 E-value=1.89943e-48, Score=491

KEGG

NA

GO

GO:0004190 GO:0003676 GO:0015074 GO:0016043 GO:0006384 GO:0016021 GO:0042555 GO:0006260 GO:0004672 GO:0048384

Length:

1260

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00618999999999998

Exp number, first 60 AAs:

0.00341

Total prob of N-in:

0.00030

outside

1 - 1260

Pi

348.328294

Theta

207.945387

Tajima's D

1.842708

CLR

117.703321

CSRT

0.855007249637518

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree