SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04209
Pre Gene Modal
BGIBMGA008639
Annotation
PREDICTED:_dystrophin?_isoform_B-like_[Bombyx_mori]
Location in the cell
Nuclear   Reliability : 3.683
 

Sequence

CDS
ATGTCGCAAGCGCAACTGGGAAGTGTGTCCGAGAAAGTACAGGAAATAAATCGAAGGATGTCACAAGACATGTCCGAGTCTAGTAAGAAACAGGAGACTCCTAAAAAGGAGCCAACTCAGAACGGTACAGAGAAGGTTTTGCCGCAGGAAAAACCACTCAAAGAAGAAAAACCTAAACTCGATTATGGCAGGTTGAGTCAGGACAGCAAGAACCCGTTCTCACCGCATTTCTACCGCCGGCCGCATGGTCACTTCGAGATGGGTCCACGTGGTCTAGATTACTCCCCGCACAGGGTAGACGTGTCCAATAGACTCCGAGATTATGGACCTCAACGTTCCACTTCAATCCACGGCCACGAACTGACCGATGGGCCGATTAAGCCAGAATACCTAGGTCATCGAAGCCACTTCGGTAGTCAGATAACATCTGCTGGAATCAGTCATCCTGATGTGGTGTTTAGGCACGACTACTACGGTCAAGTTGGATTTTCGCCCCCTAGAGCTTCCAGGTTTTCGTCTCAAGAGTACCTGAATATGCCTGCTCAATATGGACGATGGCCTGACTACAGAGCAGAGTATCGGCAGCGGCGTCGCTCACAGCAGGACCTGCACTCGTTGGAACAAGGACCAGAGTCAGGTATTCATTAA
Protein
MSQAQLGSVSEKVQEINRRMSQDMSESSKKQETPKKEPTQNGTEKVLPQEKPLKEEKPKLDYGRLSQDSKNPFSPHFYRRPHGHFEMGPRGLDYSPHRVDVSNRLRDYGPQRSTSIHGHELTDGPIKPEYLGHRSHFGSQITSAGISHPDVVFRHDYYGQVGFSPPRASRFSSQEYLNMPAQYGRWPDYRAEYRQRRRSQQDLHSLEQGPESGIH

Summary

Pfam
PF00435   Spectrin
Interpro
IPR002017   Spectrin_repeat        + More
IPR018159   Spectrin/alpha-actinin       

Ontologies

GO

Topology

Length:
215
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0
Exp number, first 60 AAs:
0
Total prob of N-in:
0.04108
outside
1  -  215
 
 

Population Genetic Test Statistics

Pi
72.458568
Theta
199.109821
Tajima's D
-1.840878
CLR
123.979908
CSRT
0.024298785060747
Interpretation
Uncertain
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