Silkworm Genome Informatics Database

Gene

KWMTBOMO04208

Annotation

PREDICTED:_uncharacterized_protein_LOC105842751?_partial_[Bombyx_mori]

Location

Bomo_Chr7(+):13682020-13685296 View in EpiBrowser

Location in the cell

Nuclear Reliability : 1.519 PlasmaMembrane Reliability : 1.44

CDS

ATGTCGGTGTCCTACATTCGCGGGAAGGTGACTAGTGAGCTCCGATGGTTCGCATCAGCTCATGCTTTGGTTGACAGAACGGATAGGGATGCGGCATTGCTCGATAGGGCGTCTCAGGTGCACGAACGGTTGGAGGTAGTGTACGATCGGTTGTCTGACCTCGTTGCTTTGGGGTCCGAAGTGGAGAAGGAGGTGATCCATGCCATCGGTCTTGACGTGGACCAGTGTCAGGAGTACGCTGATGCCATTCTGCAACGGGTGGCCGATATTAAGAAGCAGTCGTCATCCGGTGGTAATGGAGGTTCGGGAACTACGTCAGGCGTCATATCGCGCCTCCCCTCCATCGACCTGCCGATCTTCCACGGTGATCTGAACGAGTGGGTCGGCTTTATAAATTTGTTTGACAGCCTGGTCCATGGTCGGTCGGACTTGACTGCCTCTTATAAGATGGCTCAGCTTCGGGGTGCTCTGCGAGGTGAACCTGGTGAATTGGTGGCACACTTGCCTATCACCAACGACAATTATGCGGTCGCACGCCAGATCCTGTTCGACCGATATCAAAATCAACGACGGTTGGTAGACGCTCAGCTGGCCAGGCTGTTTGCGATACCCAAACTTTCTCGGGCGTCCGATATCAGAACCGAGGTACTGAATCCAGTTACGGTGGCCACTAAGGCCTTGGGCAATTTGGGTCTACCAGTAGACCAATGGTCATATCTGCTCTTTTATATTGTTGCAGGTAGGCTGCCGGTTGAGGTGCTCACTCGATTCGAGCAGCAGGACAACGCAGGTAGGGACGAACTGCCTACCCTGGCCAGTCTGCTGGCATTTTTAGAAGCTGAAAGTCGCCGACACGAGATTATGCCACCGCCCTCCTCCTCTGGGTCGCGTGTGCCGGCTTCCGGCCACGCCGTTTCGGTTGCTCAGAGGGGAGGGGGAGGGGATAAGAGGGGGCCGTCTCAACGACTGACTGCGCTCATGGCAGCGGTGGGAGGCCCACGGTGTGCCTTCTGTCATGAGAGCGGGCACGACGTAGCCGCCTGTCCGAGGTTCCGGTCGACGCGCATCAGGGGTAGACGCAACATCGTTGCCCAGCGGCGATGGTGCTTTTTTTGTTTTGGGCCGCACACGGCGAGCGTCTGTCCACAGCCACAATTGTGCCCTAATTGCGACGGTCGGCACCATGCCCTCCTGTGTCTGGAGTCTGCCGCCACTCCGAGGTCATCCGGACGCAGTCATCCAGCCTCGCCGACCGGTGAGCGCACCGGTCGTAGCCCTCGCCAATTCGGCGGCGTGGACCCTCGGAAAGAGGCTTCGCAGGGAGGCGCCGGGTTAGGTACTGCGGGCGGGTGCCAGCGGATGCCCATTAGCTACGCCGGGGTGGCCACGTTGTCCCCCCGTGCGGGGCCGTGTTCGCCTGCTGGATCGAGTAGCCCTGCTCACTCGTCTCCCCCTCCCTCAGAAGTACGGTTTTCTCCTCCGCTGAGGGAGCGGCCGACGCTGGAGCGACTCCCTCCAGTGTTTGGACCGTTTGGCCATCGTACGCGGAGTGTTGCCCCAGCCCCAGAAGCTGTTTTACTTCCTACCGCTTCTGTTCGGGTGTTGGATTCGGATGGCAACACTGTGTTTGCTCGAGCTCTGTTGGATTCCGGCGCACAGGGCAGTATTATGTCGAGCAACCTTGCAGTACGGTTGGGCAATCCTATTTACAAGTCTTCTTATTCTATTCGTGGAGTGGGCAATGTTAGAATTTCGGACGTGATCGGTCACACTTCATTTATTTTCTCATCGAATCCCAACCCTCGCTTACAGTTTAGAGTCTCAGCTTTGGTGATGCCTCAGGTGATAAGTCGTCACCCTCCGGTGAAGGTAAACAGTTACATACGGTCATTGACTTCAGACTTACGGCTAGCGGACCCCAAGTTTGACACACCGGGGCCAGTAGACGTACTACTTGGGGCGGATGTACTAGGGAAGCTGCTCCTGACTGGGAAGCGCGTTCTTCATGCGGAGGGTTTGGTTGCAATGGACACAAAATTAGGGCATGTATTGTTGGGTCCTGCGTTCCGGCCAGTCGCTGCGAGGAAATCGGACAATTTTCTGGTCGGGTCTACGCTTTCGGAAGTAGTCCAACGGTTTTGGGAACTAGAAGAACCTCCTACAGCTTATCGAGTTAACCCGGATGAGGAGGAATGTGAGCTGTTTTACCAGAATAATACGGGTCGTCTCTATTCGGGCCGGTTCTTGTTAAGACTTCCTTTTCGGGCGAATCGCCCACTGCTAGGCAGTTCGAGGAAGGCAGCAGAGACCAGACTTTTGTCAATGGAGAGACGCATGAGGCGCGACGCGGTGTTCCGGCAGAAATATGTAGAGTTTATGCGGGAGTATGAATCTTTAGGTCACATGTCGGTTTCCAAGGTAGATTGGAGTGCTACGGAGCACTGTTTCCTGCCTCATCATGCGGTTTTGAAAACTCCTAACGATGTGTGTGCGTACCTTTGGACTCCGACACAAGTATTCACTTGGTGGCTTGGGAGAATGTACTTAAATACGGTCCAATTTCCATACTTAGGAATATTGTTCAAGTTTAAAACTACGTAA

Protein

MSVSYIRGKVTSELRWFASAHALVDRTDRDAALLDRASQVHERLEVVYDRLSDLVALGSEVEKEVIHAIGLDVDQCQEYADAILQRVADIKKQSSSGGNGGSGTTSGVISRLPSIDLPIFHGDLNEWVGFINLFDSLVHGRSDLTASYKMAQLRGALRGEPGELVAHLPITNDNYAVARQILFDRYQNQRRLVDAQLARLFAIPKLSRASDIRTEVLNPVTVATKALGNLGLPVDQWSYLLFYIVAGRLPVEVLTRFEQQDNAGRDELPTLASLLAFLEAESRRHEIMPPPSSSGSRVPASGHAVSVAQRGGGGDKRGPSQRLTALMAAVGGPRCAFCHESGHDVAACPRFRSTRIRGRRNIVAQRRWCFFCFGPHTASVCPQPQLCPNCDGRHHALLCLESAATPRSSGRSHPASPTGERTGRSPRQFGGVDPRKEASQGGAGLGTAGGCQRMPISYAGVATLSPRAGPCSPAGSSSPAHSSPPPSEVRFSPPLRERPTLERLPPVFGPFGHRTRSVAPAPEAVLLPTASVRVLDSDGNTVFARALLDSGAQGSIMSSNLAVRLGNPIYKSSYSIRGVGNVRISDVIGHTSFIFSSNPNPRLQFRVSALVMPQVISRHPPVKVNSYIRSLTSDLRLADPKFDTPGPVDVLLGADVLGKLLLTGKRVLHAEGLVAMDTKLGHVLLGPAFRPVAARKSDNFLVGSTLSEVVQRFWELEEPPTAYRVNPDEEECELFYQNNTGRLYSGRFLLRLPFRANRPLLGSSRKAAETRLLSMERRMRRDAVFRQKYVEFMREYESLGHMSVSKVDWSATEHCFLPHHAVLKTPNDVCAYLWTPTQVFTWWLGRMYLNTVQFPYLGILFKFKTT

Uniprot

A0A087T9T6 A0A0E4G8R0

EMBL

KK114194 KFM61875.1 HACL01000129 CFW94423.1

Proteomes

UP000054359

Pfam

PF17919   RT_RNaseH_2        + More
PF05585   DUF1758
PF17921   Integrase_H2C2
PF05380   Peptidase_A17
PF18701   DUF5641
PF17917   RT_RNaseH
PF03564   DUF1759
PF00078   RVT_1

Interpro

IPR008737   Peptidase_asp_put        + More
IPR021109   Peptidase_aspartic_dom_sf
IPR040676   DUF5641
IPR000477   RT_dom
IPR005312   DUF1759
IPR041373   RT_RNaseH
IPR036397   RNaseH_sf
IPR041588   Integrase_H2C2
IPR001969   Aspartic_peptidase_AS
IPR041577   RT_RNaseH_2
IPR001584   Integrase_cat-core
IPR012337   RNaseH-like_sf
IPR008042   Retrotrans_Pao
IPR036875   Znf_CCHC_sf
IPR001878   Znf_CCHC

SUPFAM

SSF50630   SSF50630        + More
SSF53098   SSF53098
SSF57756   SSF57756

Gene 3D

2.40.70.10 3.30.420.10

ProteinModelPortal

A0A087T9T6 A0A0E4G8R0

KEGG

105842751 no KO assigned | (RefSeq) uncharacterized LOC105842751

GO

GO:0004190 GO:0003676 GO:0015074 GO:0008270 GO:0006508 GO:0016043 GO:0006384 GO:0016021 GO:0042555 GO:0006260 GO:0004672 GO:0048384

Length:

866

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

2.92287

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00070

outside

1 - 866

Pi

19.60677

Theta

41.825868

Tajima's D

1.253961

CLR

0.105994

CSRT

0.724663766811659

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree