Gene

KWMTBOMO04207

Pre Gene Modal

BGIBMGA008642

Annotation

PREDICTED:_dystrophin?_isoform_B-like_[Bombyx_mori]

Location

Bomo_Chr7(-):13666034-13671749      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.616

CDS

ATGGTTACAGCACTCCGCGAGCACTGGGATGAGGCCAACAACAGAGTACTGCAGCGGAAGGCACAGCTGGACGCCATGCTGGGCGACTCGCAGCGCTACGAGGCGAGGCGGCGGGAGGCGGACGCGTGGCTGACCCGCATGGAGACGCGACTGGCGGCGATGCCTATCCCTGGACACACCGCTGATGTGCTGGAAATGCAGCTTAGAGAGCAGAAGTCGTTCCACGCAGAGGTCCACCAGTACAAGCACCAGATCGAGCTGTTCAACCAGCAAACCCAGCGGCTGATAGCCGTGTACCGCAACGATGACACGTCACGCATCAAGCGCTCCACCGAGGCCATCAACCACAGATACAACGAACTCAACAATAATATTGTGGCACGAGGCAAGGCGCTACATTCAGCGGTGTCATCGCTGCAGAACTTTGATCGTTCACTGGAGAACTTCGTCGCTTGGCTGAGTGAAGCAGAGTCGATGCTGGATGCAGCGGAAAGGGATCCTCATCTGTTAAAGGTAAACAAAATACAATTTTAA

Protein

MVTALREHWDEANNRVLQRKAQLDAMLGDSQRYEARRREADAWLTRMETRLAAMPIPGHTADVLEMQLREQKSFHAEVHQYKHQIELFNQQTQRLIAVYRNDDTSRIKRSTEAINHRYNELNNNIVARGKALHSAVSSLQNFDRSLENFVAWLSEAESMLDAAERDPHLLKVNKIQF

Uniprot

H9JGJ5   A0A2H1VR47   A0A2W1BVN0   A0A194PWC4   A0A3S2TE80   A0A194RDD2   + More
A0A0L7LRH9   E0VK01   A0A2R7W842   A0A195D7N8   A0A171ADR1   A0A088AJ42   A0A2A4JJL2   A0A0L7R7U9   A0A2S2PI07   A0A0M8ZV97   A0A336MI07   A0A154PI06   A0A1B6DXB0   A0A158NE49   A0A232FN49   A0A1B6LEA1   A0A1B6KWY7   A0A0C9RVM7   A0A023F0P7   A0A026WJU2   A0A069DY06   A0A3L8E182   A0A224X947   A0A1B6IKG4   A0A1B6I1K0   A0A151X440   A0A0J7LAS8   A0A3Q0IQQ6   A0A2H8TQP5   W4VR82   A0A336L0H9   A0A336KZ29   A0A336KXU5   A0A336MK56   J9K968   A0A1A9ZXW2   A0A0K8TBX1   A0A0K8T9U8   A0A0K8T9F1   A0A0K8T9F7   A0A0A9Z8S5   A0A0A9YSD3   A0A0A9Z8T0   A0A0A9YQV7   A0A0A9YLR0   A0A0A9Z770   A0A0A9ZD78   A0A0A9Z766   A0A0A9ZD72   A0A0A9Z5J6   A0A0A9Z3C7   A0A0A9Z5J2   A0A1L8E575   A0A182JPI6   Q7Q0M7   A0A1S4H3G9   A0A182RAD4   A0A182KJV8   A0A1S4H3J1   A0A0P6IXE5   A0A1B6LPQ0   A0A1B6KJ06   A0A182LX41   A0A182Q940   A0A182N8V0   A0A1Q3FU53   B0X0E8   A0A1J1HW39   A0A084W5K6   A0A182J3T0   W5JVQ4   A0A1A9V9A0   A0A1A9YQL5   A0A1B0FIR5   A0A182YMZ7   A0A0A1X3X5   B4IHU7   A0A0A1WM29   A0A0A1WQW4   A0A0A1WU22   W8AC76   W8AXC5   W8B6P5   W8AIH3   A0A0L0CIP1   V9ICT2   A0A0K8VQM6   A0A034V0N6   A0A0K8W373   A0A0K8VES8   A0A1I8PLW7   A0A1I8MJ19   T1PM18  

Pubmed

19121390    28756777    26354079    26227816    20566863    21347285    + More
28648823    25474469    24508170    26334808    30249741    25401762    12364791    20966253    26999592    24438588    20920257    23761445    25244985    25830018    17994087    24495485    26108605    25348373    25315136   

EMBL

BABH01039133    ODYU01003943    SOQ43315.1    KZ149948    PZC76706.1    KQ459589    + More
KPI97627.1    RSAL01000252    RVE43474.1    KQ460367    KPJ15474.1    JTDY01000309    KOB77766.1    DS235235    EEB13707.1    KK854409    PTY15608.1    KQ981153    KYN08878.1    GEMB01001193    JAS01955.1    NWSH01001173    PCG72257.1    KQ414637    KOC66955.1    GGMR01015907    MBY28526.1    KQ435851    KOX70716.1    UFQT01000915    SSX27967.1    KQ434899    KZC10830.1    GEDC01007029    JAS30269.1    ADTU01012807    ADTU01012808    ADTU01012809    ADTU01012810    ADTU01012811    ADTU01012812    ADTU01012813    ADTU01012814    ADTU01012815    ADTU01012816    NNAY01000019    OXU31888.1    GEBQ01018143    JAT21834.1    GEBQ01024019    JAT15958.1    GBYB01011751    JAG81518.1    GBBI01003645    JAC15067.1    KK107207    EZA55384.1    GBGD01000006    JAC88883.1    QOIP01000002    RLU25788.1    GFTR01009002    JAW07424.1    GECU01020297    JAS87409.1    GECU01026907    JAS80799.1    KQ982548    KYQ55183.1    LBMM01000019    KMR05316.1    GFXV01004711    MBW16516.1    GANO01003961    JAB55910.1    UFQS01001181    UFQT01001181    SSX09576.1    SSX29372.1    SSX09574.1    SSX29370.1    SSX09575.1    SSX29371.1    SSX09573.1    SSX29369.1    ABLF02038815    ABLF02038816    GBRD01002769    JAG63052.1    GBRD01003655    JAG62166.1    GBRD01003657    JAG62164.1    GBRD01003638    JAG62183.1    GBHO01003851    JAG39753.1    GBHO01009596    JAG34008.1    GBHO01003846    JAG39758.1    GBHO01009598    JAG34006.1    GBHO01009597    JAG34007.1    GBHO01003848    JAG39756.1    GBHO01003849    JAG39755.1    GBHO01003853    JAG39751.1    GBHO01003854    JAG39750.1    GBHO01003845    JAG39759.1    GBHO01003847    JAG39757.1    GBHO01003850    JAG39754.1    GFDF01000226    JAV13858.1    AAAB01008980    EAA13945.4    GDUN01000260    JAN95659.1    GEBQ01014295    JAT25682.1    GEBQ01028823    JAT11154.1    AXCM01000591    AXCM01000592    AXCN02001866    GFDL01003977    JAV31068.1    DS232235    EDS38109.1    CVRI01000024    CRK92203.1    ATLV01020672    KE525304    KFB45500.1    ADMH02000278    ETN67140.1    CCAG010016203    GBXI01008510    JAD05782.1    CH480840    EDW49464.1    GBXI01014839    JAC99452.1    GBXI01013241    JAD01051.1    GBXI01011718    JAD02574.1    GAMC01021105    JAB85450.1    GAMC01021104    JAB85451.1    GAMC01021106    JAB85449.1    GAMC01021108    JAB85447.1    JRES01000342    KNC32077.1    JR038061    AEY58099.1    GDHF01011130    JAI41184.1    GAKP01022136    JAC36816.1    GDHF01006979    JAI45335.1    GDHF01014946    JAI37368.1    KA648958    AFP63587.1   

Proteomes

UP000005204    UP000053268    UP000283053    UP000053240    UP000037510    UP000009046    + More
UP000078492    UP000005203    UP000218220    UP000053825    UP000053105    UP000076502    UP000005205    UP000215335    UP000053097    UP000279307    UP000075809    UP000036403    UP000079169    UP000007819    UP000092445    UP000075881    UP000007062    UP000075900    UP000075882    UP000075883    UP000075886    UP000075884    UP000002320    UP000183832    UP000030765    UP000075880    UP000000673    UP000078200    UP000092443    UP000092444    UP000076408    UP000001292    UP000037069    UP000095300    UP000095301   

PRIDE

H9JGJ5   

Pfam

PF00435   Spectrin        + More
PF00307   CH
PF09069   EF-hand_3
PF00397   WW
PF00569   ZZ
PF09068   EF-hand_2

Interpro

IPR018159   Spectrin/alpha-actinin        + More
IPR002017   Spectrin_repeat       
IPR001589   Actinin_actin-bd_CS       
IPR001715   CH-domain       
IPR036872   CH_dom_sf       
IPR035436   Dystrophin/utrophin       
IPR000433   Znf_ZZ       
IPR036020   WW_dom_sf       
IPR001202   WW_dom       
IPR011992   EF-hand-dom_pair       
IPR015154   EF-hand_dom_typ2       
IPR015153   EF-hand_dom_typ1       

SUPFAM

SSF47576   SSF47576        + More
SSF47473   SSF47473       
SSF51045   SSF51045       

Gene 3D

1.10.418.10    

CDD

cd00014  CH
cd00201  WW

ProteinModelPortal

H9JGJ5   A0A2H1VR47   A0A2W1BVN0   A0A194PWC4   A0A3S2TE80   A0A194RDD2   + More
A0A0L7LRH9   E0VK01   A0A2R7W842   A0A195D7N8   A0A171ADR1   A0A088AJ42   A0A2A4JJL2   A0A0L7R7U9   A0A2S2PI07   A0A0M8ZV97   A0A336MI07   A0A154PI06   A0A1B6DXB0   A0A158NE49   A0A232FN49   A0A1B6LEA1   A0A1B6KWY7   A0A0C9RVM7   A0A023F0P7   A0A026WJU2   A0A069DY06   A0A3L8E182   A0A224X947   A0A1B6IKG4   A0A1B6I1K0   A0A151X440   A0A0J7LAS8   A0A3Q0IQQ6   A0A2H8TQP5   W4VR82   A0A336L0H9   A0A336KZ29   A0A336KXU5   A0A336MK56   J9K968   A0A1A9ZXW2   A0A0K8TBX1   A0A0K8T9U8   A0A0K8T9F1   A0A0K8T9F7   A0A0A9Z8S5   A0A0A9YSD3   A0A0A9Z8T0   A0A0A9YQV7   A0A0A9YLR0   A0A0A9Z770   A0A0A9ZD78   A0A0A9Z766   A0A0A9ZD72   A0A0A9Z5J6   A0A0A9Z3C7   A0A0A9Z5J2   A0A1L8E575   A0A182JPI6   Q7Q0M7   A0A1S4H3G9   A0A182RAD4   A0A182KJV8   A0A1S4H3J1   A0A0P6IXE5   A0A1B6LPQ0   A0A1B6KJ06   A0A182LX41   A0A182Q940   A0A182N8V0   A0A1Q3FU53   B0X0E8   A0A1J1HW39   A0A084W5K6   A0A182J3T0   W5JVQ4   A0A1A9V9A0   A0A1A9YQL5   A0A1B0FIR5   A0A182YMZ7   A0A0A1X3X5   B4IHU7   A0A0A1WM29   A0A0A1WQW4   A0A0A1WU22   W8AC76   W8AXC5   W8B6P5   W8AIH3   A0A0L0CIP1   V9ICT2   A0A0K8VQM6   A0A034V0N6   A0A0K8W373   A0A0K8VES8   A0A1I8PLW7   A0A1I8MJ19   T1PM18  

KEGG

101738393    no KO assigned | (RefSeq) dystrophin, isoform B-like

GO

GO:0002162   GO:0003779   GO:0008270   GO:0016021   GO:0046872   GO:0005515   GO:0006508   GO:0016043   GO:0006384   GO:0042555   GO:0006260   GO:0004672   GO:0048384  

Length:

177

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00054

Exp number, first 60 AAs:

0.00048

Total prob of N-in:

0.18204

outside

1  -  177

 

 

Pi

162.05193

Theta

158.057156

Tajima's D

-1.03226

CLR

239.572056

CSRT

0.133693315334233

Interpretation

Uncertain