SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04200  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008650
Annotation
cyclin-dependent_kinase_regulatory_subunit_[Bombyx_mori]
Full name
Cyclin-dependent kinases regulatory subunit      
Location in the cell
Mitochondrial   Reliability : 1.017 Nuclear   Reliability : 1.368
 

Sequence

CDS
ATGCCCGTGGACCAGATTCAATATTCGGAAAGATATACAGATGACGTCTACGAATACAGGCATGTCATCTTACCACCGGATATAGCCCGCATGGTGCCAAAATCCCATCTTATGACAGAGACAGAGTGGCGAAACCTTGGTGTTCAGCAGAGTCCCGGCTGGCTCCACTTTATGGTGCATAATCCTGAACCCCATGTTCTATTATTTAGAAGACCTAGAACTGATATACCGGCTCCCTTGAATGGCTTAGATACAAATACTAGTTCTGCTGTGAAGTTGATTACGAAATTGGCTTGGCTGCAAACGCGAAACTAA
Protein
MPVDQIQYSERYTDDVYEYRHVILPPDIARMVPKSHLMTETEWRNLGVQQSPGWLHFMVHNPEPHVLLFRRPRTDIPAPLNGLDTNTSSAVKLITKLAWLQTRN

Summary

Description
Binds to the catalytic subunit of the cyclin dependent kinases and is essential for their biological function.
Similarity
Belongs to the CKS family.
EMBL
BABH01039110    DQ311152    ABD36097.1    NWSH01002258    PCG68785.1    KC242802    + More
KZ149948    AGW00925.1    PZC76714.1    AGBW02013189    OWR43893.1    GAIX01006673    JAA85887.1    ODYU01002550    SOQ40203.1    JTDY01000101    KOB78862.1    KQ459589    KPI97634.1    KQ460367    KPJ15482.1    GAKP01001899    JAC57053.1    GBXI01009052    JAD05240.1    GDHF01031695    GDHF01025977    GDHF01010597    JAI20619.1    JAI26337.1    JAI41717.1    JXUM01007517    GAPW01006528    KQ560241    JAC07070.1    KXJ83642.1    CH477331    EAT43338.1    NNAY01003942    OXU18611.1    GFDL01009299    JAV25746.1    JRES01000752    KNC28755.1    QOIP01000013    RLU15358.1    KK852771    KDR16878.1    NEVH01011202    PNF31753.1    GAPW01006527    JAC07071.1    AAAB01008844    EAA06091.3    APCN01003117    DS231931    EDS27329.1    KZ288325    PBC28004.1    JXJN01018551    GAMC01009828    GAMC01009827    JAB96727.1    CCAG010012556    EZ423415    ADD19691.1    GANO01001963    JAB57908.1    PYGN01001224    PSN36510.1    EZ419933    ACZ28288.1    KQ766586    OAD53665.1    GDAI01001757    JAI15846.1    GL888406    EGI61521.1    KQ981693    KYN37854.1    KQ435768    KOX75224.1    KQ976439    KYM86731.1    ADTU01018942    CH916369    EDV92908.1    GGFJ01011281    MBW60422.1    CH933806    EDW15341.1    CH480815    EDW42992.1    CM000160    EDW96553.1    CH954181    EDV49887.1    AE014297    AY102666    AAF54272.1    AAM27495.1    CH902617    EDV42810.1    CH964232    EDW80967.1    CH940650    EDW68200.1    OUUW01000008    SPP84049.1    CM000070    EAL28963.1    CH479185    EDW38217.1    GGFL01002057    MBW66235.1    GFDF01007031    JAV07053.1    UFQS01000027    UFQT01000027    SSW97693.1    SSX18079.1    APGK01023056    BT126632    KB740462    AEE61595.1    ENN80606.1    FJ821033    ACN94717.1    AJVK01072439    GFDL01015067    JAV19978.1    LSMT01000669    PFX15239.1    KQ971338    EFA02600.1    AJWK01014019    DS235762    EEB16645.1    RCHS01000617    RMX57746.1    KL250514    KGB32722.1    UZAL01028320    VDP40292.1    UZAK01032399    VDP26912.1    UZAI01016813    VDP16471.1    KL596721    KER27504.1    AY915290    AAX30511.2    FN314628    FN319284    FN319285    CAX75012.1    HE601627    CCD79014.1   
Pfam
PF01111   CKS        + More
PF00147   Fibrinogen_C
Interpro
IPR036858   Cyclin-dep_kinase_reg-sub_sf        + More
IPR000789   Cyclin-dep_kinase_reg-sub       
IPR002181   Fibrinogen_a/b/g_C_dom       
IPR036056   Fibrinogen-like_C       
SUPFAM
SSF55637   SSF55637        + More
SSF56496   SSF56496       
Gene 3D
PDB
4YC6     E-value=1.1861e-24,     Score=273

Ontologies

Topology

Length:
104
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00216
Exp number, first 60 AAs:
0.00024
Total prob of N-in:
0.27846
outside
1  -  104
 
 

Population Genetic Test Statistics

Pi
250.197479
Theta
205.772839
Tajima's D
0.664636
CLR
141.160753
CSRT
0.56277186140693
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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