Silkworm Genome Informatics Database

Gene

KWMTBOMO04184

Pre Gene Modal

BGIBMGA008660

Annotation

PREDICTED:_ubiquitin_carboxyl-terminal_hydrolase_8_isoform_X3_[Papilio_xuthus]

Location

Bomo_Chr7(-):13013593-13039831 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.213

CDS

ATGACGGAAACACGCCGTAAACAATTGCACCTCGGGAAATGCATCGAAGATCTGGACAAATTACACAATGTTCCAGATTTGAAAACGAAACGAGCTAACCTGTTATGCAAGACAGCACAGAAATTGTTTGAAAGCGCCGAAGAAGCTCGGAAAAATGGTGACGAGGAGTACTCCTACGTATATTACATGAAATATTTGAGAGTCATAGCCTATCTGAGCAAAGATAAGGAGTATCTGAAGGATAAGTCATACTACAACAGCATGCTGGGAGCTAAGAACCCTAACAAGGCTATTGATGCTGCTGAGAAACTAAAGAACAGTCTTATAGACAGGTATGCAATGGAATTGAAGCAGAAACGTCTAAATGACATAAAAGAGAATGAGATATTCAAACAAAAGATTGAGGAGAACAGAAAGAAGGCCATTGAGGTCTCCATCAATGAGCCGCCTTCGACACCTGTCAACTTACCAGGTCCTGATGAGGTGACCATCAAAAGCGAACAACTCTATTCAATCTTGAAGGCCGGCAAGTTGAAGGTCATGATCCTTGATGCAAGACCTGGGAAAGATTACTTAGAATCTCACATCAGCTACCCGGCTTGTATCAGTGTGCCCGAAGAATGCATATCACCTGGTCAATCAGCTAATGTCCTAGAACAGAATTTACCGGCAGCCTCCAGACCTGTCTGGAGTTCCCGGGCCTCGGCCGACCTCATCGTGACTTTGGACTGGAGCTCCAGGGCCCCTATACCGGGGACGCCGCTCCACTTGCTCAGGACCATACTGCTCAAGTGGGACATTAAAGTTCAGTACGCGAGACCGCCGCTCGCCCTCGAAGGCGGCTACGAGGACTGGCTGCTCAAGTACCCCGCGTCCACCACCAACCCGCAGGCGCAGCCGCCGCGCCCAGACGACTCCATGGACGACATGCTGGGAGACATAGAGTACCCGAGCTGGGCGGAGCTGAGTCCGCCCGCCGCACCCCGCCGCGCGCCCGAGCCCGACCGCGCCACCAAGGCCGCCGCCGTGCTGGTGTACGACGAGCGCGCCCGCACCATGCAGAAGATCCTCGAGCAGCAGGAGGTCATCGCCGACACCTCGCTCACCCTCGAGATGCAGAGGATCGAAGCTGAGCAGGACTGGGAGAAAGTTCGTTCGCAGCAGGAGACGGAACAACAAGACGACGTCAGAGCCATGTACCAGCTCAGGGAGCAGGAGATCATCAGTCAGCTCATGCAGCTGGAGAACAAGCAGTACGACATGGAACAAGAGAACCAGAGTCTCCGCGAGCAGCTAGAGGAGTACCAGCGTCGGGAGCGGGACGAGGCCGCCCAGCTAGCCGAGACCATCGCCAGCCAGGAGACCGAGGCCGACGCCGACGAGCGGGCCCGTGCGCGCACAGAGCTGGCCGCGCGCATCGCCGCCGTGCGCCAGCAGCGGGCGCGCCTGGACCGCACGCGCGAGCAACTCGAGCAGCAACGGAAGCGGAAGCTGGCGGAGGCCAGGGAGAAGAAGAAGCCCGGGGAGGACAGGGAGGATGACGGCGACGCATACATGGACGACAGCCCCGGGGCCGCCGCCCTCTCCCGCGCGCACTCCTCCCCAAACATCGCCAAGATGGAGGAGGAGGCTAGCGCCCCCCAGTTCGACCGCAGCACCAAGCCCGCGGCGCCCCCGCCCGCCGACCACGCGCACAGGGATTTCCAGCCGGTCTGGGGGACTGTGGGTCGTGGGTTGACCGGCCTGAAGAACCTTGGGAACACTTGCTACATGAACTCCATTATACAATGTCTGAACAACACCGCCATACTTGTCGCTTACTTCAGGAACGGGCAGTATCTGGAGCACGTTAACAGGTCGGCGAGCACCCGCGGCGCCATAGCAGAGGAAGTGGCGGCCGTGGTCAGGGCGCTGTGGTCGGGCCAGTACAGGTTCATCGCTACCAGAGATCTCAGGAACGAGGTCGGCAAGCAGCAGCGCGCCTTCCGGGGCTGCGAGCAGCAGGACTCGCACGAGTTCCTCACCATCCTCATGGACTGGCTGCACCTCGACCTGCAGTTCCGGGCCGACGCCCCCCCGCACAAGGACAGCCTCGCGCCCTCGGAGAAGGCTTGGTACGAGTACACCAAGTCTAAGGAGAGCCTCATTCTGCGGCTGTTCTACGGCCAGATCAAGTCGACGGTCCGGTGCACCGTCTGCTCCAAGCAGAGCGTCACCTACGAGTCCTTCTCCAACCTGTCGCTGGAGCTGCCGGCCAACGCCAACAGGTGCTCCTTAAGCGACTGCCTCAAGCTGTACCTGAGCGGCGAGACCATCCCGGGCTGGAACTGCCCCAACTGCAAGGACAAGCGCGACGCCGTCAAGAAGCTCGACATCTCCAAGCTGCCGCCCGTGCTGGTCATCCACTTCAAGAGGTTCTACGTGGACCCCAAGGAGTACCAGGCGAACGCGTACAGGAAGAAGCAGACCTACATCGACTTCCCGCTGGAGGGGCTGGACATGCGGCAGGTCGCCCCGGCCTGCCCCGGCGCCGCCGCCTACGAGCTGTACGCCGTGTCCAACCACTACGGCTCCATGGAAGGCGGCCACTACACCGCCTACTGCAAGAGCAGCCTCTACGGGAAGTGGTACAAGTACGACGACCACGTGGTCACCGAGATCCCCGCCAGCGACGTCAAGTCCAGCGCCGCCTACATCCTGTTCTACTCGTCCTGCGGGCCCGCGCGCGCCTCGTGA

Protein

MTETRRKQLHLGKCIEDLDKLHNVPDLKTKRANLLCKTAQKLFESAEEARKNGDEEYSYVYYMKYLRVIAYLSKDKEYLKDKSYYNSMLGAKNPNKAIDAAEKLKNSLIDRYAMELKQKRLNDIKENEIFKQKIEENRKKAIEVSINEPPSTPVNLPGPDEVTIKSEQLYSILKAGKLKVMILDARPGKDYLESHISYPACISVPEECISPGQSANVLEQNLPAASRPVWSSRASADLIVTLDWSSRAPIPGTPLHLLRTILLKWDIKVQYARPPLALEGGYEDWLLKYPASTTNPQAQPPRPDDSMDDMLGDIEYPSWAELSPPAAPRRAPEPDRATKAAAVLVYDERARTMQKILEQQEVIADTSLTLEMQRIEAEQDWEKVRSQQETEQQDDVRAMYQLREQEIISQLMQLENKQYDMEQENQSLREQLEEYQRRERDEAAQLAETIASQETEADADERARARTELAARIAAVRQQRARLDRTREQLEQQRKRKLAEAREKKKPGEDREDDGDAYMDDSPGAAALSRAHSSPNIAKMEEEASAPQFDRSTKPAAPPPADHAHRDFQPVWGTVGRGLTGLKNLGNTCYMNSIIQCLNNTAILVAYFRNGQYLEHVNRSASTRGAIAEEVAAVVRALWSGQYRFIATRDLRNEVGKQQRAFRGCEQQDSHEFLTILMDWLHLDLQFRADAPPHKDSLAPSEKAWYEYTKSKESLILRLFYGQIKSTVRCTVCSKQSVTYESFSNLSLELPANANRCSLSDCLKLYLSGETIPGWNCPNCKDKRDAVKKLDISKLPPVLVIHFKRFYVDPKEYQANAYRKKQTYIDFPLEGLDMRQVAPACPGAAAYELYAVSNHYGSMEGGHYTAYCKSSLYGKWYKYDDHVVTEIPASDVKSSAAYILFYSSCGPARAS

Similarity

Belongs to the peptidase C19 family.

Uniprot

A0A2A4K4J0 A0A194RDY4 A0A067QS86 A0A0A1WZJ0 A0A034VW25 A0A182II22 + More
A0A182XU89 A0A182WQK4 A0A0K8VE90 Q7QD14 A0A1S4GGH0 B4KB31 A0A182PYX7 B4LYC8 B4IKK0 A0A1A9WJT6 Q16MR5 A0A1S4FVH0 A0A1L8DSZ7

Pubmed

26354079 24845553 25830018 25348373 12364791 17994087 + More
18057021 17510324

EMBL

NWSH01000158 PCG78946.1 KQ460367 KPJ15490.1 KK853083 KDR11612.1 + More
GBXI01010357 JAD03935.1 GAKP01011406 JAC47546.1 APCN01000586 GDHF01015126 JAI37188.1 AAAB01008859 EAA08027.5 CH933806 EDW15735.1 KRG01702.1 CH940650 EDW66924.1 CH480853 EDW51604.1 CH477852 EAT35622.1 GFDF01004501 JAV09583.1

Proteomes

UP000218220 UP000053240 UP000027135 UP000075840 UP000076407 UP000075920 + More
UP000007062 UP000009192 UP000075885 UP000008792 UP000001292 UP000091820 UP000008820

Pfam

PF08969   USP8_dimer        + More
PF00443   UCH
PF00581   Rhodanese

Interpro

IPR018200   USP_CS        + More
IPR038765   Papain-like_cys_pep_sf
IPR001394   Peptidase_C19_UCH
IPR015063   USP8_dimer
IPR028889   USP_dom
IPR036873   Rhodanese-like_dom_sf
IPR001763   Rhodanese-like_dom

SUPFAM

SSF52821 SSF52821 + More
SSF54001 SSF54001

Gene 3D

3.40.250.10

ProteinModelPortal

A0A2A4K4J0 A0A194RDY4 A0A067QS86 A0A0A1WZJ0 A0A034VW25 A0A182II22 + More
A0A182XU89 A0A182WQK4 A0A0K8VE90 Q7QD14 A0A1S4GGH0 B4KB31 A0A182PYX7 B4LYC8 B4IKK0 A0A1A9WJT6 Q16MR5 A0A1S4FVH0 A0A1L8DSZ7

PDB

3N3K E-value=2.96279e-79, Score=755

KEGG

101736709 K11839 ubiquitin carboxyl-terminal hydrolase 8 [EC:3.4.19.12] | (RefSeq) ubiquitin carboxyl-terminal

GO

GO:0016579 GO:0036459 GO:0006511 GO:0045880 GO:0008587 GO:0005829 GO:0004843 GO:0016322 GO:0090263 GO:0006366 GO:0006384 GO:0016021 GO:0042555 GO:0006260 GO:0004672 GO:0048384

Length:

911

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00885999999999998

Exp number, first 60 AAs:

0.00064

Total prob of N-in:

0.00030

outside

1 - 911

Pi

213.727899

Theta

161.161281

Tajima's D

1.04267

CLR

0.006752

CSRT

0.668766561671916

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree