Silkworm Genome Informatics Database

Gene

KWMTBOMO04173

Pre Gene Modal

BGIBMGA008668

Annotation

PREDICTED:_clip_domain_serine_protease_4_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr7(-):12799884-12813052 View in EpiBrowser

Location in the cell

Extracellular Reliability : 3.454

CDS

ATGCGTATACTCTGTGCTTTATTGTGCTTCAGTTTATGTACGGAATTAGTTTTTTGTCAATTCGGTTTCTTCCAGCAAAGAGATGAGAAGAGATTCTCGCCGTTCCAGTTCGCTCAGAATCTCCTACCCAACCCGAATCGGTTCCGAGAAGGCATCAATAACTTCTTCAACATTGGCCCAAGGCCTATAGCCAACGAGAACCCAAACCAGTACACACCAAACCAACTAGACCAAAATTATGACAGCGGAATCCAGTCTCCCCCAAACCAGAATCAATTCACCGAAAACAAGCCAGTAGTGTTTCCCACCCCACCTCCCGAACCTGAGATTCCGAACGACCAAAACGGTTACGGCTATCAGCCCGATCAGAACGAGGAGCCACAAAACAAACCGGTCCTGTTCCCGACTGAAGAGTCCAGAGCTGATGAAACCAATCAAGAACAGCCGAATGAAAACCAAGACAACGTCCAGAATCCTGGTAACCAAAACGAAGGGAATCCATTCACGGAGAATGCTGCACAAGATTTGAGCACTCTAGCACCAGTTCAACCCCAGTCGGAGGGGTACAGTGATGTCCACACTGACACTAACTCGTTTGAGCACACCACCCTACTACAGCCCCTAACTCCACTCGCACTCCCTAATATAGAATCCAGAAACGTGAATTTCGGACCATCAGGAATATTCAATGAACCATGCCAAACAGTGGAAAACGAGGTCGGGAGCTGTCTGAACTTGCTCCAGTGCACGCCTTACCTGAAAATCGTTAAGGAGTTCAAGACGAATCCTGCCGCTGCTGTACTACTCAGGAAGGCTCATTGCGGCTTCGAAGGGTCTAATCCTAAGGTCTGCTGTCCCCTCCCTGGCTTTCCAACGGTACCGCCAGATACTACCACCACTACGACCACGACCACGCAAGCGCCGGCTCCGACGCAATCCGCGAAATCAGCGATAGAGGACTTGGTACCAGCGTTCCCTGAGCCCCCGTACTGCGGCGTCAGCAATGCTTCCTTCAGCAGGGTCGTCGGGGGAGTCAGCGCTAAACTTGGCGATTTCCCTTGGATGGTGAACCTTGGTTACAAGCCGCGCAGAGGCGGCGGAGTGCGCTGGCTGTGCGGAGGCTCCCTCATCACCAGCAGGCACGTGCTCACGGCGGCGCACTGCATGCACAACCACGACGATGACCTGTAA

Protein

MRILCALLCFSLCTELVFCQFGFFQQRDEKRFSPFQFAQNLLPNPNRFREGINNFFNIGPRPIANENPNQYTPNQLDQNYDSGIQSPPNQNQFTENKPVVFPTPPPEPEIPNDQNGYGYQPDQNEEPQNKPVLFPTEESRADETNQEQPNENQDNVQNPGNQNEGNPFTENAAQDLSTLAPVQPQSEGYSDVHTDTNSFEHTTLLQPLTPLALPNIESRNVNFGPSGIFNEPCQTVENEVGSCLNLLQCTPYLKIVKEFKTNPAAAVLLRKAHCGFEGSNPKVCCPLPGFPTVPPDTTTTTTTTTQAPAPTQSAKSAIEDLVPAFPEPPYCGVSNASFSRVVGGVSAKLGDFPWMVNLGYKPRRGGGVRWLCGGSLITSRHVLTAAHCMHNHDDDL

Similarity

Belongs to the peptidase S1 family.

Uniprot

H9JGM1 Q5MPB8 A0A2W1BQQ9 A0A2A4JS27

Pubmed

19121390 15944088 28756777

EMBL

BABH01034383 BABH01034384 AY672792 AAV91014.1 KZ149929 PZC77442.1 + More
NWSH01000785 PCG74210.1

Proteomes

UP000005204 UP000218220

PRIDE

H9JGM1

Pfam

PF00089 Trypsin + More
PF12032 CLIP

Interpro

IPR001254   Trypsin_dom        + More
IPR018114   TRYPSIN_HIS
IPR009003   Peptidase_S1_PA
IPR001314   Peptidase_S1A
IPR038565   CLIP_sf
IPR033116   TRYPSIN_SER
IPR022700   CLIP

SUPFAM

SSF50494 SSF50494

Gene 3D

2.20.20.90

CDD

cd00190 Tryp_SPc

ProteinModelPortal

H9JGM1 Q5MPB8 A0A2W1BQQ9 A0A2A4JS27

PDB

1VR1 E-value=9.70329e-08, Score=135

KEGG

692435 no KO assigned | (RefSeq) CLIP4, BmCLIP4, BmSP, Sp; clip domain serine protease 4

GO

GO:0004252 GO:0006508 GO:0016020 GO:0005515 GO:0016021 GO:0042555 GO:0006260 GO:0004672 GO:0048384

SignalP

Position: 1 - 19, Likelihood: 0.982446

Length:

396

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

7.77609

Exp number, first 60 AAs:

7.75662

Total prob of N-in:

0.37982

outside

1 - 396

Pi

191.422542

Theta

149.021342

Tajima's D

1.057923

CLR

0.189694

CSRT

0.677766111694415

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics