SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04141
Pre Gene Modal
BGIBMGA008713
Annotation
PREDICTED:_uncharacterized_protein_LOC101746757_isoform_X1_[Bombyx_mori]
Location in the cell
Mitochondrial   Reliability : 2.222 Nuclear   Reliability : 2.173
 

Sequence

CDS
ATGAACAACCAAAGTGCAGCCGGTCTGAGACGGTCAGCCGTAGCAGAAAGGATACGTCTCAGAGAGGAATGGTCAGCACTTAAAGGAACACAGAATCAATTACAAAGTCGAAAAGATTGTGAAAGTATTGCAAAACAGAAAAAAACTCATAACTGGACCAGTAAAGTGAGATCCGTTAAAAACAATGTCGGAATTGTGGGAAAAGAAAATAAGAACTCTGAAATACCAATGACGAGTGAAGCATTACGAGGAATAGTGGCATTAGTGGAAGTGGGATCTGCGTCTAAAGCTCTTGCACTTAGAGCTGCCCTCACCGCTCTGGGTGCTTCTGTGATGCCGAAATGGAGTCCCCTTGTCACTCATTTAATTTGGTCTCAAGGTGGATGTCGGTCAGTCCGCAGGCGGGCTCGAGCCTTGGCCTGCAGATTAGTGTCCCCGATGTGGGTGGAGGCCTGCGCCACTGCAGCCCGCCGGATTCCGGAGACGACCTTCCCGGCAGCGGCCAGACAATCTGACATACCCTCACCTAGGACCCTCAGGCAATTGCTGAAAAAAGCAGAAATGGAGAATGTCTCCATAATGGACCTCCTATCGGATAAAGAAGAAAGGGAAGCTAAGCAATTAAGGTTCCGTGTCTCCACCGACTCCGAGGCGAATTCCAGCGGTGACGTCACTGTTAATACGTCACGCGATCAATCTAATGACACCATAGATTTAGGAACCCGCGTGAACACGGCTCCCCGCAGAGCCTTGCCTGCCTCCGCGTCGATAAGTCCCCGACCTCCCGTCAGGTCCAGGAGGAAACTCTTCACGCAGAAGGAGCCTGAAGCAGAGAGCTCCACTGACGCGGAGTCAGACAACGAAAACAAGGATAGGCAAAACAAAACAAGTAAAAAGCTTACCCAAAAAGATCGGAATGGCTTAGCTCAAGCCGAGCGCATGGCGAGGAAGATGCTCGGCCAGCGCACAGACATCACCAGCGCCAGAAGCGACGCAGAATATAGAATTGTGCTAACGGGCATGAACCGCGACGAAAGACACGAGGTAGTGGAGTGTGTCCGCGCGCTGGGCGGGCGCGTGCTGAGCCGCGTCAACCGGACCACGACGCACGTGCTGCTCGGCTCGTGCCGTGCCGCCCCGCATGCAACAGACGCCGTGTCAGGTGTGGCGCCGCATACGCAGAACCCAGATTCCCAGAACGTGAATGTAGACTTGCCGCAAAAGGCTCGCACCCTGAACTCGTTGGAGGGGGCGGCGCGCGGGTGCCGCGTGCTGGCGGCGCGCTGGGCCCGGGACTCCGCGGCCGCCGGGCGCTGGTTGCACCACGCCGCCTACGAGGTGCCGCATCTCAAGAAAATATCGCAGAAGGCGCGGTTGGAGCGCGCAGCCCTCGGGAAGCGGAGGTCCGAGTACGCTTACGACGTGTTCAGCGGCATGCGCGTGCACGTGTCCGCGGGCGACGCGCAGGAGGGCCCGGCCGCGCGGCTGCTGGCGCTGTGCGGCGCCGAGCTGTGCCCCGCCGCGGCGGACGCGGACCTGGCGGTGGGCGCGGGCGCCGGCACCGTCGCCTGCAAGTGGGTCTTCGACAGCGTAGCCGCCGCCAGGATGAGGACCGTGAGGCGGTACATCAACTAA
Protein
MNNQSAAGLRRSAVAERIRLREEWSALKGTQNQLQSRKDCESIAKQKKTHNWTSKVRSVKNNVGIVGKENKNSEIPMTSEALRGIVALVEVGSASKALALRAALTALGASVMPKWSPLVTHLIWSQGGCRSVRRRARALACRLVSPMWVEACATAARRIPETTFPAAARQSDIPSPRTLRQLLKKAEMENVSIMDLLSDKEEREAKQLRFRVSTDSEANSSGDVTVNTSRDQSNDTIDLGTRVNTAPRRALPASASISPRPPVRSRRKLFTQKEPEAESSTDAESDNENKDRQNKTSKKLTQKDRNGLAQAERMARKMLGQRTDITSARSDAEYRIVLTGMNRDERHEVVECVRALGGRVLSRVNRTTTHVLLGSCRAAPHATDAVSGVAPHTQNPDSQNVNVDLPQKARTLNSLEGAARGCRVLAARWARDSAAAGRWLHHAAYEVPHLKKISQKARLERAALGKRRSEYAYDVFSGMRVHVSAGDAQEGPAARLLALCGAELCPAAADADLAVGAGAGTVACKWVFDSVAAARMRTVRRYIN

Summary

Pfam
PF12738   PTCB-BRCT        + More
PF00533   BRCT
Interpro
IPR001357   BRCT_dom        + More
IPR036420   BRCT_dom_sf       
IPR022047   Microcephalin-like       
IPR011364   BRCA1       
IPR031099   BRCA1-associated       
SUPFAM
SSF52113   SSF52113       
Gene 3D

Ontologies

GO

Topology

Length:
544
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.48556
Exp number, first 60 AAs:
0
Total prob of N-in:
0.01175
outside
1  -  544
 
 

Population Genetic Test Statistics

Pi
210.015101
Theta
173.98807
Tajima's D
0.407615
CLR
173.571682
CSRT
0.486375681215939
Interpretation
Uncertain
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