SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04132  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA008706
Annotation
PREDICTED:_actin-interacting_protein_1_[Amyelois_transitella]
Full name
Actin-interacting protein 1      
Alternative Name
Protein flare
Location in the cell
Cytoplasmic   Reliability : 1.812 Extracellular   Reliability : 1.505
 

Sequence

CDS
ATGTCTTATTCGAATAAGTATATTTTTGCGGCCCTGCCAAGGACTCAGCGCGGGACGCCGTTAGTTTTAGGCGGTGACCCGAAAGGAAAGAATTTCCTTTACACCAATGGAAATTCTGTTATTATAAGAGACATAGAGAATCCTGCAATTGCGGACGTTTACACGGAGCACTCTTGCCAAGTGAACGTTGCCAAGTACTCTCCTAGCGGATTCTACATTGCATCTGGAGACGCGTCCGGGAAGGTTCGCATCTGGGACACGGTTAACAAGGAACACATCCTAAAGAATGAGTTCCAGCCGATCGGTGGTCCAATAAAGGACATCGCTTGGAGCGCCGACAGCCAACGCATGGTCGTCGTCGGCGAAGGCAGGGAGAGATTCGGTCACGTCTTTATGTCTGAAACCGGTACGTCAGTTGGCGAGATCAGTGGTCAGTCGAAGCCGATAAATTCGGTGGACTTCAGACCCACGAGGCCGTTTCGCATCGTGACCGCCTCAGAGGACAACACCATCGCCGTGTTCGAGGGGCCTCCGTTCAAGTTCAAGTGCACCAAGCAGGAGCATACGCGTTTCGCTCAAGCGGTACGCTACAGTCCAGATGGCAGCCTGTTCGCATCAGCTGGCTTCGATGGCAAGATCTTCCTCTATGACGGAGCCACCTCAGAGCTCAAAGGAGAGATCGGTTCTCCGGCGCACAAGGGCGGCGTTTACGGCATCTCGTGGTCGCCGGACGGTAAACAGTTACTGTCCTGTTCGGGAGACAAGACCTGCGCGATATGGGACATCGAGACGATGCAACGGACCACTCTATTCAACATGGGCAACGCCGTCGAAAACCAACAGGTGTCTTGCCTATGGCAAGGGAAGCATCTCATATCCGTGTCCTTGTCCGGGGTGATCAATTACTTGGATGTCGACAACCCGGACAAGCCGAAGCGAGTGCTGATGGGCCACAACAAGCCGATAACCTGTCTCGCTCTCCACGGCAACGGCAAAACCGTGTACACCGCCAGCCACGACGGCTGCGTCACCGAGTGGAATGTGGACTCGGGCGAAGCTCGTCACGTCGAGGGCCAGGGTCACGGGAACCAGGTCAACGGCATGAGGACGACCAAGGACGGGAGCCTCCTCACCATAGGTATCGACGACACGCTGCGGAAGGCGGAACCCACAGCGGAAGGGGCGACGCCGACGTACACGGGCGCCGCGGTGCCCTTGGGCTCGCAGCCTCGCGCGCTGGACCACGCCGCCGAAGACGACATCACGATCGTCGCCACAGTCAAAGAGCTGGTGGTCTTCGTCGGCGGCAACAAGCAGTCCAGCCTGCCTCTGGCCTACGAGCCGACGTGCGTCGCCATCGACAAGAGCTCGGGGCTGGTCGCCGTCGGCGGCGGCGACAGTCGGGTGCACGTGTACTCGCGCGGGGCGGGCGCGGCGGGCGCGGAGCTGGCGCACCTGGGGCCCGTCACGGACGCGCGCTTCAGTCCGGACTCGCGCTACCTGGTGGCCGGCGACGCTAACCGGAAACTGATACTCTACTCCACCGACGAGTTCAAGCTGGCCCACAACAAGGAGTGGGGCTTCCACACCGCGCGCGTCAACTGCGTGGCCTGGAGCCCGGACTCTAAGCGTGTCGCTTCGGGCTCGCTCGACACCACCATCATCGTCTGGAGCGTTGACCAGCCATCCAAGCACACGATCATTAAGAATGCCCATCCCCAAAGTCAGATAACCGGTCTGACCTGGATCGACGACGAGACCATAGTGTCGACCGGACAGGACGCCAACACGCGGGTCTGGACCGTGCCCAAGGCTTAA
Protein
MSYSNKYIFAALPRTQRGTPLVLGGDPKGKNFLYTNGNSVIIRDIENPAIADVYTEHSCQVNVAKYSPSGFYIASGDASGKVRIWDTVNKEHILKNEFQPIGGPIKDIAWSADSQRMVVVGEGRERFGHVFMSETGTSVGEISGQSKPINSVDFRPTRPFRIVTASEDNTIAVFEGPPFKFKCTKQEHTRFAQAVRYSPDGSLFASAGFDGKIFLYDGATSELKGEIGSPAHKGGVYGISWSPDGKQLLSCSGDKTCAIWDIETMQRTTLFNMGNAVENQQVSCLWQGKHLISVSLSGVINYLDVDNPDKPKRVLMGHNKPITCLALHGNGKTVYTASHDGCVTEWNVDSGEARHVEGQGHGNQVNGMRTTKDGSLLTIGIDDTLRKAEPTAEGATPTYTGAAVPLGSQPRALDHAAEDDITIVATVKELVVFVGGNKQSSLPLAYEPTCVAIDKSSGLVAVGGGDSRVHVYSRGAGAAGAELAHLGPVTDARFSPDSRYLVAGDANRKLILYSTDEFKLAHNKEWGFHTARVNCVAWSPDSKRVASGSLDTTIIVWSVDQPSKHTIIKNAHPQSQITGLTWIDDETIVSTGQDANTRVWTVPKA

Summary

Description
Induces disassembly of actin filaments in conjunction with ADF/cofilin family proteins. Essential for organismal and cell viability. Required for the development of normal wing cell planar polarity.
Similarity
Belongs to the WD repeat AIP1 family.
Keywords
Actin-binding   Alternative splicing   Complete proteome   Cytoplasm   Cytoskeleton   Developmental protein   Reference proteome   Repeat   WD repeat  
Feature
chain  Actin-interacting protein 1
splice variant  In isoform B.
EMBL
GDQN01011030    JAT80024.1    NWSH01000538    PCG75789.1    KQ459356    KPJ01285.1    + More
BABH01034307    BABH01034308    BABH01034309    GANO01001611    JAB58260.1    KQ976641    KYM78709.1    KQ977141    KYN05415.1    ADTU01021658    KK107311    EZA52859.1    GL888273    EGI63515.1    KQ981744    KYN36287.1    KK852605    KDR20414.1    KQ982383    KYQ56928.1    GDKW01000572    JAI56023.1    GECZ01026243    JAS43526.1    KQ980765    KYN13469.1    GBYB01005255    JAG75022.1    GBHO01045094    JAF98509.1    GBHO01045095    JAF98508.1    GBHO01045096    JAF98507.1    GBHO01045097    JAF98506.1    GEDC01010448    JAS26850.1    GBGD01000891    JAC87998.1    GDHC01014924    JAQ03705.1    GDHC01012903    JAQ05726.1    GGFK01008140    MBW41461.1    KQ414705    KOC63212.1    GBRD01013222    JAG52604.1    KQ435687    KOX81379.1    ADMH02001952    ETN60327.1    GBBI01002236    JAC16476.1    NNAY01000998    OXU25558.1    GECL01002437    JAP03687.1    GFDF01000137    JAV13947.1    KZ288191    PBC34505.1    GFDF01000136    JAV13948.1    KU932266    APA33902.1    AXCN02000008    DS232250    EDS38401.1    GFDL01013182    JAV21863.1    APCN01000365    NEVH01024424    PNF17231.1    CH477797    EAT36116.1    GAPW01000601    JAC12997.1    GGMR01015779    MBY28398.1    AAAB01008859    EAA07462.6    ACPB03020751    ACPB03020752    ACPB03020753    ACPB03020754    ACPB03020755    ACPB03020756    ACPB03020757    GFXV01000365    MBW12170.1    GFTR01007372    JAW09054.1    AXCM01004352    KQ971361    EFA08118.1    ABLF02021242    AJWK01027950    AJWK01027951    GAMC01016519    GAMC01016518    JAB90037.1    JXUM01008452    JXUM01008453    JXUM01008454    KQ560261    KXJ83493.1    APGK01040103    KB740975    ENN76547.1    ATLV01004135    KE524190    KFB35049.1    KB632267    ERL90992.1    GL446793    EFN87254.1    KQ759893    OAD62099.1    KA645079    AFP59708.1    CH933809    EDW19455.1    GDHF01025865    JAI26449.1    GAKP01011819    GAKP01011818    JAC47133.1    CH940647    EDW70065.1    CH916366    EDV97478.1    JRES01000045    KNC34623.1    CH963847    EDW72618.1    GBXI01014309    JAC99982.1    CVRI01000050    CRK99342.1    LJIG01022745    KRT78936.1    CH954178    EDV51674.1    CM000159    EDW94409.1    CH480815    EDW41382.1    CM000363    CM002912    EDX10353.1    KMY99386.1    AE014296    AY061340    CH379070    EAL30400.1    OUUW01000002    SPP76373.1    BT099796    ACV91633.1    CH902618    EDV41310.1   
Pfam
PF00400   WD40        + More
PF08662   eIF2A
PF17005   WD40_like
PF12894   ANAPC4_WD40
PF07648   Kazal_2
PF00853   Runt
PF04882   Peroxin-3
Interpro
IPR020472   G-protein_beta_WD-40_rep        + More
IPR019775   WD40_repeat_CS       
IPR017986   WD40_repeat_dom       
IPR015943   WD40/YVTN_repeat-like_dom_sf       
IPR011047   Quinoprotein_ADH-like_supfam       
IPR001680   WD40_repeat       
IPR036322   WD40_repeat_dom_sf       
IPR013979   TIF_beta_prop-like       
IPR031544   WD40-like       
IPR024977   Apc4_WD40_dom       
IPR002350   Kazal_dom       
IPR036058   Kazal_dom_sf       
IPR012346   p53/RUNT-type_TF_DNA-bd_sf       
IPR006966   Peroxin-3       
IPR000040   AML1_Runt       
IPR013524   Runt_dom       
IPR008967   p53-like_TF_DNA-bd       
IPR011043   Gal_Oxase/kelch_b-propeller       
SUPFAM
SSF50998   SSF50998        + More
SSF50978   SSF50978       
SSF100895   SSF100895       
SSF49417   SSF49417       
SSF50965   SSF50965       
Gene 3D

Ontologies

Topology

Subcellular location
  
Length:
605
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.000620000000000001
Exp number, first 60 AAs:
0.00019
Total prob of N-in:
0.00108
outside
1  -  605
 
 

Population Genetic Test Statistics

Pi
249.198942
Theta
169.341026
Tajima's D
0.425004
CLR
0.698883
CSRT
0.487875606219689
Interpretation
Uncertain
Peptides ×
Source Sequence Identity Evalue
25044914 NAGITVQDVSDITR 96.55 3e-13
27102218 VNCVAWSPDSKR 96.55 3e-13
28467696 NAHFEAQITPVSDPTMR 96.55 3e-13
28556443 TCAIWDIETMQR 100.00 3e-10
28556443 IFLYDGATSELK 100.00 3e-10
26822097 EIVVFVGGNK 96.00 8e-10
26280517 KACNCIIIK 96.00 8e-10
25044914 KAEPAPVSNDEVPAIPEAK 96.00 8e-10
28467696 KAEPAPVSNDEVPAIPEAK 96.00 8e-10
28556443 YVHQLNELLGNSVPAGR 100.00 2e-09
26822097 GTPIVIGGDPK 100.00 3e-09
25044914 TVYGIINASSAAVR 100.00 3e-09
26822097 TCAIWDIETMQR 100.00 3e-09
26280517 DIEMIAGR 100.00 3e-09
28467696 DIENGIAEPSITR 100.00 3e-09
28556443 AEPTAEGATPTYTGAAVPLGSQPR 100.00 3e-09
28467696 AEPSRPSPEHNSPQHSASTTSNEVK 95.83 5e-09
26822097 KAEPTAEGATPTYTGAAVPIGSQPR 100.00 1e-08
26280517 NECTGMEIDGR 100.00 1e-08
25044914 NEFQPIGGPIK 100.00 1e-08
27102218 YSPSGFYIASGDASGK 100.00 1e-08
28467696 NEFQPIGGPIK 100.00 1e-08
25044914 FGGAIDR 100.00 2e-07
28556443 DIENPAIADVYTEHSCQVNVAK 100.00 2e-07
25044914 IVTAINK 100.00 2e-06
28467696 IVTAEFK 100.00 2e-06
28556443 YLVAGDANR 100.00 2e-06
28556443 NEFQPIGGPIK 100.00 9e-06
28556443 NEFQPIGGPIK 100.00 9e-06
28556443 YSPDGSLFASAGFDGK 100.00 2e-04
28556443 YIFAALPR 100.00 2e-04
28556443 YIFAALPR 100.00 2e-04
26822097 SSGIVAVGGGDSR 100.00 6e-04
26280517 YSGVSPSTEGEVIFR 100.00 6e-04
25044914 YSPEAADITASVR 100.00 6e-04
24402669 YSPDWNDIDTRPIPEWYDK 100.00 6e-04
27102218 GTPIVIGGDPK 100.00 6e-04
28467696 YSPQSSVDAK 100.00 6e-04
28556443 YSPDGSLFASAGFDGK 100.00 6e-04
28556443 YSPDGSLFASAGFDGK 100.00 6e-04
26822097 TVYTASHDGCVTEWNVDSGEAR 100.00 0.004
26280517 TAVETAIIIIR 100.00 0.004
25044914 TAYSYFYEAFEGYDGADSPK 100.00 0.004
27102218 QIISCSGDK 100.00 0.004
28467696 TAYSYFYEAFEGYDGADSPK 100.00 0.004
28556443 DIAWSADSQR 100.00 0.004
28556443 LGPVTDAR 100.00 0.010
26822097 YSPDGSIFASAGFDGK 100.00 0.016
25044914 GGVTVTIAGIEGSSPVICSR 100.00 0.016
27102218 TCAIWDIETMQR 100.00 0.016
28467696 GGVVIDR 100.00 0.016
27102218 GAGAAGAEIAHIGPVTDAR 100.00 0.031
28467696 VNCVAWSPDSK 100.00 0.031
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