SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04131
Pre Gene Modal
BGIBMGA008688
Annotation
PREDICTED:_uncharacterized_protein_LOC106110164_[Papilio_polytes]
Location in the cell
Nuclear   Reliability : 3.306
 

Sequence

CDS
ATGGAAACCTTGAATATGGCTAAGTTGAATTTATCGAGTGTCCGGCCACATGCTTCGACCGAAAGCGGCCCAAAAGTTGAGGTAGCAGACCCTAAGATGAACCCTGTGGTATTGACTGATTATGATGACGATTACCATTGTGAGTACAGGGATGAGATATGGAAGAGCTTACTTGAGCAGGAGGCAGAGAAATCACCGATTCATCTGCAGTCACCTCAGCTGCAATTCCGAGGTTCCCTAGTACAACAACTTCGTGATGCCACAAAGAAATTAGGCCTGACTATTGCTACACTGCACTCTGCCGTGTCCTTGCTGGATTTGTTCATGGATGCCCACAGACTGAGAGCTGATAGACTGACTCATGTTGCATTAGCTTGCTTAAGTCTTGCCGCAAAAAGCGAAGATAAATTCAGTCGCGCTCCAACTCTGAAGACTCTATCTAGAATCAGCGGTGTCCAGCTCTGCGGGAAGACATTCAGACAGCTCGAATGGATGGTAGGCCAGCACGTGCGATGGAGGCTATTGTCACCGACTCCGGTGACATTCGCGGCACTATTGGCTCAGTATGTTGTCACCGACGCTGACTTGACGACAAGGCATCCGAAGTTTGTTCGAAGATTCAGACGGGACGGTGCCAAGAAGCTTGAAGCATACTTAGATTTGACTTTATCTGATGTGCGGCTGAAGGTGGTGGAGGGCGTGGAGGTGGGGTGCGCGTGCGTGGCGTGCGCGCGCGCCGAGCTAGGGCTGTGCGCTTGGCCGGGCTGGCTGGCCGCACGCACCGCGCGCTCGCCCGCCGCCGTCGCCCCTATCGCCGCTCTACTTCAAAGGATGATGCAAATACTAAAATCACGCGACGCGGCCGATTCCGAGATCGATCAGGGCTACGGCAGCGCTAGGACGTCGCCGAATCTAACGCCATGTACCTCGCCGAATCTCCAGACCTCTCCGGCGTCCAGCACTTCGAGCACCTCCAGAGTGAATGAGTACAGACAAAGGTCGATCGAAGGTCCGTATTCGGTTTTAGATTTAGACGAATCGAATCTGCCGAACATTCAGGAGACTTACTACACGCTGCCGGCTGAGCCTAATACGCAGAGGGTCAATAACCCGGCGGACTACAGGTATTTTAAATCCAGGAGGATGCTAGAAGCCAGCTTGGGTTCGGTGCCCAGCACTAGCGTGGCCATGAAGCGAGGCTTAGATCCTAACGTCGAATTGGAGAGTAAAAGGTATCGTTTGACCTCACAGATGTCTCAGGTCGTGCTTTGA
Protein
METLNMAKLNLSSVRPHASTESGPKVEVADPKMNPVVLTDYDDDYHCEYRDEIWKSLLEQEAEKSPIHLQSPQLQFRGSLVQQLRDATKKLGLTIATLHSAVSLLDLFMDAHRLRADRLTHVALACLSLAAKSEDKFSRAPTLKTLSRISGVQLCGKTFRQLEWMVGQHVRWRLLSPTPVTFAALLAQYVVTDADLTTRHPKFVRRFRRDGAKKLEAYLDLTLSDVRLKVVEGVEVGCACVACARAELGLCAWPGWLAARTARSPAAVAPIAALLQRMMQILKSRDAADSEIDQGYGSARTSPNLTPCTSPNLQTSPASSTSSTSRVNEYRQRSIEGPYSVLDLDESNLPNIQETYYTLPAEPNTQRVNNPADYRYFKSRRMLEASLGSVPSTSVAMKRGLDPNVELESKRYRLTSQMSQVVL

Summary

Similarity
Belongs to the cyclin family.
Pfam
PF00134   Cyclin_N
Interpro
IPR028859   Cyclin-J        + More
IPR036915   Cyclin-like_sf       
IPR006671   Cyclin_N       
IPR039361   Cyclin       
IPR013763   Cyclin-like       
SUPFAM
SSF47954   SSF47954       
PDB
5L2W     E-value=0.00539957,     Score=94

Ontologies

GO

Topology

Length:
423
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.536489999999999
Exp number, first 60 AAs:
0
Total prob of N-in:
0.03193
outside
1  -  423
 
 

Population Genetic Test Statistics

Pi
214.960072
Theta
179.354885
Tajima's D
0.383759
CLR
0.220079
CSRT
0.473776311184441
Interpretation
Uncertain
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