Gene

KWMTBOMO04129  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA008689

Annotation

PREDICTED:_tRNA_pseudouridine_synthase_A?_mitochondrial_[Amyelois_transitella]

Location

Bomo_Chr7(-):11917795-11925039      View in EpiBrowser

Full name

tRNA pseudouridine synthase      

Location in the cell

Nuclear   Reliability : 3.037

CDS

ATGTCAGTATCATTAATCAGATTGTTTGTAAGTAATTTGAACAAAACTTTACCAAGACATCCTGTTAGAACAGCCATAACAAGCGCACGCTTGCTGTCCGTAATGGAAGCTGCCGACGTAACGAAAGATGAAGAAAATAAGTCAATCGATATAGTGCCGAATAAGCTATTAACGAGGTACAACAAACGCCGGGCACATCGCGATTGGGAGACCAAACCTCCAGGCGAAATCAAAAAACCATACGAAAGGATTAAGAGAAAAAAAATGGCTATGCTGCTGGGGTACTCCGGAGTTGAATATTACGGTATGCAACGAAATCCTGGTGTACAAACAATAGAAGAAGAATTATTAAAAGCATTGTTGGACGCTAAATATATTACACAGGAAGATTTCGAAAATGCCCAGAATGCACAGTTCCAACGTAGCTCCAGGACTGACAAGGGTGTGTCCGCTGCTGAACAAGTTGTCTCACTTAAACTACCTTTAGAAGTCAATGTTGAAGAAATAAACAAAAGGTTACCTGAGACTATTAAAGTATTTGCTGTTAAAAGAGTAACAAACAGATTCAATTCCAAATCTAAATGCAATGCTCGTTCATATAGCTACACTCTTCCCACGTATGTGTTTGAACCTAGTTTAGTAACACATGAAAAGAGAAAGGCATACAGGATACCGGCTGAGAAAATTGAAAAGTTAAATAGTATATTGGGGGTGTACAAGGGAACAAAAAGCTATCATAATTTTACAGAGAAAAAGCACCACCAAGATCCCTCATCGTCGAGGTACATGATGAGTTTCAGTGTTGAAAAAGTCTTTGTATATTCAGATATGGAATTTGCAGTTTTAATTGTTAAGGGACAGAGTTTTATGCTACATCAGATAAGGAAGATGGTGGGCCTGGCGATAGCCATAATGAGGGGCCATGCCGACTCATCGATCCTGGAGAAAGCGTTCGGTAAAGACAAGGTCATGATACCGACCGCCCCAGGACTTGGTCTTGTTTTAAACAAGGTCCACTACGATAGATACGACGCTCGACACAAAGGGACCCACGATAGCCTCACATGGGACAAAGAAGAAGAAACCATACAAAAGTTCAAAGAGGATCACATATACCCAAACATAGTTAGGGGTGAGATCGAAAGAGATTCCATGGGAACTTGGTTGGAGAAACTCAGTAAGCATTCCTATGAACCGACTGAAGAGATGATTCAGGTTGAGAAAGCTGATGCTGAGGGCGTTGACGATGAATCTGATGCTGAAGATCTAGACGACGAAAAGGATAATGATGAAGAAAAGTGTGAAAATGGTGTTGTTTCACCACTGAAAGATGTTGTGAAGGAGGGTAAAGTTGATGATGTCACTTCATAG

Protein

MSVSLIRLFVSNLNKTLPRHPVRTAITSARLLSVMEAADVTKDEENKSIDIVPNKLLTRYNKRRAHRDWETKPPGEIKKPYERIKRKKMAMLLGYSGVEYYGMQRNPGVQTIEEELLKALLDAKYITQEDFENAQNAQFQRSSRTDKGVSAAEQVVSLKLPLEVNVEEINKRLPETIKVFAVKRVTNRFNSKSKCNARSYSYTLPTYVFEPSLVTHEKRKAYRIPAEKIEKLNSILGVYKGTKSYHNFTEKKHHQDPSSSRYMMSFSVEKVFVYSDMEFAVLIVKGQSFMLHQIRKMVGLAIAIMRGHADSSILEKAFGKDKVMIPTAPGLGLVLNKVHYDRYDARHKGTHDSLTWDKEEETIQKFKEDHIYPNIVRGEIERDSMGTWLEKLSKHSYEPTEEMIQVEKADAEGVDDESDAEDLDDEKDNDEEKCENGVVSPLKDVVKEGKVDDVTS

Catalytic Activity

tRNA uridine(38-40) = tRNA pseudouridine(38-40)

Similarity

Belongs to the tRNA pseudouridine synthase TruA family.

Uniprot

H9JGP2   A0A2H1WTP4   A0A2W1B742   A0A2A4JVY4   A0A0N1I9V1   A0A194RPM3   + More
A0A182YKG2   Q7QC20   A0A182VE88   A0A182LFA0   A0A182HT63   A0A182R3M0   A0A182U518   A0A182P711   A0A182K7C8   A0A182XI76   A0A0K8TSA7   A0A182LRR9   A0A084VSD7   A0A182VX74   A0A182Q9R1   B4K8F4   A0A182NA64   A0A182FKX4   A0A182IXN6   A0A2M4BQV1   A0A2M4BMY2   A0A2M4BN39   A0A2M3Z9P1   A0A2M4ASL4   A0A0Q9WG16   B4LWM8   A0A0L0C3T2   A0A1Q3EY57   A0A034WME4   A0A034WLV9   W5JH41   W8CBH4   A0A1B0D9A1   W8BKC4   Q172K2   A0A0K8VS26   A0A2P8XR64   A0A0A1XDK8   A0A1I8P769   A0A0A1XH38   A0A1I8P775   B0XKE2   A0A1J1IJR9   D6WB40   A0A0M4EQD4   A0A182GY80   A0A1I8MK04   A0A1I8MK05   A0A3B0JQA4   A0A2J7PLN4   A0A1W4WHZ7   A0A3B0K3P7   A0A3B0KC47   A0A336LXT1   A0A1Y1JX55   B4GN12   B3M0B3   A0A1W4V9T1   A0A0N8P1J4   Q29BR9   Q9VDK6   A0A1W4UXH4   E1JIR1   A0A087YP41   A0A3B3TMV7   B4IIA3   A0A0A9W1T9   H1UUC7   A0A1A9VB88   A0A0R3NK63   A0A146L3K6   A0A0S7L5L1   B4NFV6   A0A3B5L6Q3   A0A0K8SNY3   B4JUB5   B4PPQ2   B4QS13   A0A1L8E088   A0A3Q2DL26   A0A3Q0IU94   A0A0R1E0W3   A0A023G7R6   G3MRJ2   M3ZFI9   B3NYW6   A0A3B5L8N0   L7MAQ4   A0A224Z2D3   A0A224XLX2   A0A3B3ZLE3   A0A3P8S7X1  

EC Number

5.4.99.-

Pubmed

19121390    28756777    26354079    25244985    12364791    20966253    + More
26369729    24438588    17994087    26108605    25348373    20920257    23761445    24495485    17510324    29403074    25830018    18362917    19820115    26483478    25315136    28004739    15632085    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    25401762    26823975    17550304    22216098    23542700    25576852    28797301    25463417   

EMBL

BABH01034307    ODYU01010976    SOQ56428.1    KZ150325    PZC71388.1    NWSH01000538    + More
PCG75794.1    KQ459356    KPJ01288.1    KQ460075    KPJ17971.1    AAAB01008859    EAA08062.3    APCN01000420    GDAI01000575    JAI17028.1    AXCM01000752    ATLV01015922    KE525044    KFB40881.1    AXCN02000216    CH933806    EDW16536.2    GGFJ01006212    MBW55353.1    GGFJ01005274    MBW54415.1    GGFJ01005273    MBW54414.1    GGFM01004505    MBW25256.1    GGFK01010267    MBW43588.1    CH940650    KRF83417.1    EDW67693.1    JRES01000944    KNC26950.1    GFDL01014812    JAV20233.1    GAKP01003612    JAC55340.1    GAKP01003610    JAC55342.1    ADMH02001206    ETN63682.1    GAMC01004791    GAMC01004789    JAC01765.1    AJVK01004291    GAMC01004790    JAC01766.1    CH477435    EAT40962.1    GDHF01023304    GDHF01010949    JAI29010.1    JAI41365.1    PYGN01001492    PSN34496.1    GBXI01014022    GBXI01004813    JAD00270.1    JAD09479.1    GBXI01004021    JAD10271.1    DS233805    EDS31663.1    CVRI01000053    CRK99788.1    KQ971311    EEZ98974.2    CP012526    ALC47188.1    JXUM01097280    KQ564329    KXJ72425.1    OUUW01000007    SPP82572.1    NEVH01024424    PNF17246.1    SPP82570.1    SPP82571.1    UFQS01000038    UFQT01000038    SSW98082.1    SSX18468.1    GEZM01100726    JAV52808.1    CH479186    EDW39138.1    CH902617    EDV43119.1    KPU80092.1    CM000070    EAL26928.1    AE014297    AAF55785.1    ACZ94960.1    AYCK01001032    CH480842    EDW49647.1    GBHO01044774    JAF98829.1    BT133011    AEX66197.1    KRS99668.1    GDHC01015641    JAQ02988.1    GBYX01184784    JAO84788.1    CH964251    EDW83173.1    GBRD01014191    GBRD01011315    GBRD01011314    JAG54510.1    CH916374    EDV91085.1    CM000160    EDW96152.1    CM000364    EDX12209.1    GFDF01002005    JAV12079.1    KRK02939.1    GBBM01005182    JAC30236.1    JO844493    AEO36110.1    CH954181    EDV48369.1    GACK01004791    JAA60243.1    GFPF01012872    MAA24018.1    GFTR01005608    JAW10818.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000053240    UP000076408    UP000007062    + More
UP000075903    UP000075882    UP000075840    UP000075900    UP000075902    UP000075885    UP000075881    UP000076407    UP000075883    UP000030765    UP000075920    UP000075886    UP000009192    UP000075884    UP000069272    UP000075880    UP000008792    UP000037069    UP000000673    UP000092462    UP000008820    UP000245037    UP000095300    UP000002320    UP000183832    UP000007266    UP000092553    UP000069940    UP000249989    UP000095301    UP000268350    UP000235965    UP000192223    UP000008744    UP000007801    UP000192221    UP000001819    UP000000803    UP000028760    UP000261500    UP000001292    UP000078200    UP000007798    UP000261380    UP000001070    UP000002282    UP000000304    UP000265020    UP000079169    UP000002852    UP000008711    UP000261520    UP000265080   

PRIDE

H9JGP2    Q9VDK6    E1JIR1    H1UUC7   

Pfam

PF01416   PseudoU_synth_1

Interpro

IPR020095   PsdUridine_synth_TruA_C        + More
IPR001406   PsdUridine_synth_TruA       
IPR020103   PsdUridine_synth_cat_dom_sf       
IPR041708   PUS1/PUS2-like       
IPR020097   PsdUridine_synth_TruA_a/b_dom       

SUPFAM

SSF55120   SSF55120       

Gene 3D

3.30.70.660    

CDD

cd02568  PseudoU_synth_PUS1_PUS2

ProteinModelPortal

H9JGP2   A0A2H1WTP4   A0A2W1B742   A0A2A4JVY4   A0A0N1I9V1   A0A194RPM3   + More
A0A182YKG2   Q7QC20   A0A182VE88   A0A182LFA0   A0A182HT63   A0A182R3M0   A0A182U518   A0A182P711   A0A182K7C8   A0A182XI76   A0A0K8TSA7   A0A182LRR9   A0A084VSD7   A0A182VX74   A0A182Q9R1   B4K8F4   A0A182NA64   A0A182FKX4   A0A182IXN6   A0A2M4BQV1   A0A2M4BMY2   A0A2M4BN39   A0A2M3Z9P1   A0A2M4ASL4   A0A0Q9WG16   B4LWM8   A0A0L0C3T2   A0A1Q3EY57   A0A034WME4   A0A034WLV9   W5JH41   W8CBH4   A0A1B0D9A1   W8BKC4   Q172K2   A0A0K8VS26   A0A2P8XR64   A0A0A1XDK8   A0A1I8P769   A0A0A1XH38   A0A1I8P775   B0XKE2   A0A1J1IJR9   D6WB40   A0A0M4EQD4   A0A182GY80   A0A1I8MK04   A0A1I8MK05   A0A3B0JQA4   A0A2J7PLN4   A0A1W4WHZ7   A0A3B0K3P7   A0A3B0KC47   A0A336LXT1   A0A1Y1JX55   B4GN12   B3M0B3   A0A1W4V9T1   A0A0N8P1J4   Q29BR9   Q9VDK6   A0A1W4UXH4   E1JIR1   A0A087YP41   A0A3B3TMV7   B4IIA3   A0A0A9W1T9   H1UUC7   A0A1A9VB88   A0A0R3NK63   A0A146L3K6   A0A0S7L5L1   B4NFV6   A0A3B5L6Q3   A0A0K8SNY3   B4JUB5   B4PPQ2   B4QS13   A0A1L8E088   A0A3Q2DL26   A0A3Q0IU94   A0A0R1E0W3   A0A023G7R6   G3MRJ2   M3ZFI9   B3NYW6   A0A3B5L8N0   L7MAQ4   A0A224Z2D3   A0A224XLX2   A0A3B3ZLE3   A0A3P8S7X1  

PDB

4J37     E-value=9.45703e-80,     Score=756

KEGG

101741953    K06173 tRNA pseudouridine38-40 synthase [EC:5.4.99.12] | (RefSeq) tRNA pseudouridine synthase A, mit

GO

GO:0001522   GO:0008033   GO:0106029   GO:0003723   GO:0009982   GO:0031119   GO:1990481   GO:0005634   GO:0009451   GO:0006508   GO:0042555   GO:0006260   GO:0016021   GO:0004672   GO:0048384  

PANTHER

PTHR11142  

Length:

456

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.03055

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00123

outside

1  -  456

 

 

Pi

213.702637

Theta

145.210467

Tajima's D

1.166632

CLR

0.13267

CSRT

0.713214339283036

Interpretation

Uncertain