SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04127
Annotation
PREDICTED:_piggyBac_transposable_element-derived_protein_4-like_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 1.877 Nuclear   Reliability : 2.498
 

Sequence

CDS
ATGTTTAGTCTTGGAGATGAAAGCGTGGAAGTGGAAACTTCTCCAGGCCCATCTGGAATTCCACAACGGCCTTCATTGACAGAGCAATTGAAAGTCGCCAAGGTGGCGAGGCTTTTGGATAAAAAGCATGAGAATTTGCTGTCTGCGGACCAAAAAAAGGAGCTGGCCAGGCTGCGCGATGGCAAGCAAGTGGGCAATTTTAAAATGCCAGATGCTCCAGAACCACAAAGAGGAAGAGGAAAGGGAAAGGGGAAGGGCAAAGGAAGGGGCAGTGAAGACTCGCGGATGTGGAGGCCATGCCCACTTTTACCTGGGGTACCAACTGTCCCTCCTTCACGTGTACGTCAGTCGTGGGAATTGCAACAGCAACGCCCGATTGATATCACCGCGGAGCAGGAGGATGAGGATGATGACATCGAAAGCTATTTTCTTCCAGATATCACCGAGGATGAGGAGATGCGTCCTCCCCTCCTCGAGGATGAGGAGGCCGTTCCTTCTGCAGGGACCCCACCTCAAGCGAAGAAACGCAAGATCCAATTTTCGCCCTCGATGGGGATCATCCAGGCTACTGCATTGCCTCAAAATATCGTGCCAGCAGAGATAGAACTCCTGGGGTTTACACCTTCTTCTACCGGTACTCGAACAGCGCTTGGCTCTGGAAGAAGTAATTACAGTATGGATATCGATATAGATATGGAGCGTGACTTCATAGAGCCTGGCGAAGGCAGCGAAGTAGATGAAGGTGATTCGGCGAATATGGTCGGTATGATCGATATTTCTTTGAAACCAAGACGAAACGATGATTTTCCGATGGACTTAGACAGTATTGCTGAACATGAGGTAGTTGAGGTGATACAGGAGCTGGACAATGCTGCCGACGAAGTCCTTCGGAACGTGATTTGGGATGCAGATATTATTGCTTACATCGTGCGCGAAACCAACCGCTACGGTGCTCAGCTAATAAGGTCGACCATTCCATCCAAGCCAAATTCTAGATTAAGCCGTTGGAAAGACGTCACCAGTGACGAAATCCTACGGTTTTTAGCAGTTTTAATGTTACAGTCACTAGTTATAGATTATGTGGAGCGCGAATATTGGTATGCCGTGATTGAAGAACTCCAAATAGGCAATTTTAAAGAAATAATGACTTATAACCGTTTCATCGTCATCAAACGTTGTCTTCATTTTATAGACAATGCCACTTTGCCTGTGCCGCCTACCAAACTCGATAAAATCATCCCCATCATAGAGCACCTAAACAAAAAATTTAAGTCTTTATACGTACTAGAACAAAATATAGCAATTGACGAGTCACTCCTTCTTTGGAAGGGGCGCCTCTCATTTGCGCAAAAAATTGCTACAAAAAGAGCTCGAGTAGGTATAAAGTCTTACGAGTTATGTGAATCCAGGACTGGATATTTATGGCAGATGGAGGTCTACACGGGCAAAGGGCACGCACATGTGGTACAAGACGGGGAGCCGGAAGAGCGCGGGCAAGAGTCTGACGAGCCGGAGAGTGCCACGGCCCAGATTGTGCTGAACTTAACGAGACCACTTTTTGATAAAGGCCATACATTAATAATGGACAATTTTTATAATGCGCCACTTTTGTCTCGGATCCTAAAAGTTCAGCACAAGACTGATTCGATGGGTACTCTACGACTTAACAGAGAGTTTGTCCCCGAAGCTCTTAAAAAAAAAACAAAAAAAAACATGAAGGAGGGCGAGGTGGCATTCAGCACAACCAAAGACCTCAGTGTGGTTGTGTGGATGGACAAAAATATTGTGGCAATGATTTCTTCTTTCCATCCCATAGAAGTCGGCGGCATTGAAAAATACGGTTATTACCGGTACAAACCGCAAGTTGTTCTTGATTATAATTTCTCAATGGGCGGCATCGACCACAAAGATCAAATGCTGTCTGCCTATCCCATTGAGAGATCACGTAACAATCTGGTACAAAAAATTATTTCGCCGACTTTTAAATGTATCGATGCATAA
Protein
MFSLGDESVEVETSPGPSGIPQRPSLTEQLKVAKVARLLDKKHENLLSADQKKELARLRDGKQVGNFKMPDAPEPQRGRGKGKGKGKGRGSEDSRMWRPCPLLPGVPTVPPSRVRQSWELQQQRPIDITAEQEDEDDDIESYFLPDITEDEEMRPPLLEDEEAVPSAGTPPQAKKRKIQFSPSMGIIQATALPQNIVPAEIELLGFTPSSTGTRTALGSGRSNYSMDIDIDMERDFIEPGEGSEVDEGDSANMVGMIDISLKPRRNDDFPMDLDSIAEHEVVEVIQELDNAADEVLRNVIWDADIIAYIVRETNRYGAQLIRSTIPSKPNSRLSRWKDVTSDEILRFLAVLMLQSLVIDYVEREYWYAVIEELQIGNFKEIMTYNRFIVIKRCLHFIDNATLPVPPTKLDKIIPIIEHLNKKFKSLYVLEQNIAIDESLLLWKGRLSFAQKIATKRARVGIKSYELCESRTGYLWQMEVYTGKGHAHVVQDGEPEERGQESDEPESATAQIVLNLTRPLFDKGHTLIMDNFYNAPLLSRILKVQHKTDSMGTLRLNREFVPEALKKKTKKNMKEGEVAFSTTKDLSVVVWMDKNIVAMISSFHPIEVGGIEKYGYYRYKPQVVLDYNFSMGGIDHKDQMLSAYPIERSRNNLVQKIISPTFKCIDA

Summary

Pfam
PF13843   DDE_Tnp_1_7        + More
PF13842   Tnp_zf-ribbon_2
Interpro
IPR018159   Spectrin/alpha-actinin        + More
IPR029526   PGBD       
IPR032718   PGBD4_C_Znf-ribbon       

Ontologies

GO

Topology

Length:
666
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00794
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00008
outside
1  -  666
 
 

Population Genetic Test Statistics

Pi
315.575055
Theta
191.603833
Tajima's D
2.508994
CLR
12.107539
CSRT
0.945102744862757
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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