Silkworm Genome Informatics Database

Gene

KWMTBOMO04120

Annotation

PREDICTED:_uncharacterized_protein_DDB_G0287625-like_[Bombyx_mori]

Location

Bomo_Chr7(-):11782758-11783679 View in EpiBrowser

Location in the cell

Nuclear Reliability : 4.537

CDS

ATGGCCAGTGATAAGGACCTACATGACGATAAACCCATCATGGATTCTATACCTACACAAGTAGAGTATTCCACTTTAGCAAAGCTTTTGCCGAGCTATGACGGCAACAAACGCATTGCCCTAGCATTTTATATCGAAGGTGTGGAAAATGCATTAGAACTTATAGCAAACAAAAATGATTACATTATGGCTTGTTTAATCAGAAACAACCTATCCGGTAATGCTGTTGGAGCCCTCTCCGAGAGCCCCGGCTCAAAGACTTGGGAAGATATTAAAAGGACTTTACAAAAGAAATTTGGTGAATTTCGCACTGAAATCCAACTAATACAAGAGCTGATGAACACAACTAGAGATAATGGCTCACTAGATGTGTTCGGCGACAAAATTAAAATTTTAAGAAACGCCTTCATAACAATGGAACCAACAAGGCGAATATTTTACGAACAAATGGCATTAGAAACCTTCCTAGACAAATTAAACCCAATAACTGCAATACATATTAGGTTAAAACACGTTGAAAATTTAGACCAAGCCATCACAGTAGCTAAACGAGAGGAAATTAAATTTAAATCCAGGCTTAATCAGCACAATAAAACACAAAAGAAAATTCTACCTAATAATAACTACTCTCAAAAACCTTACCCTGCAAATAAAAAACAGCCCTTCCCCAAAAAACAAACAGATAACGAAAATCAAAACAAAAAGAAAATCCATTTCCAAAAAGAAGAATCAGATAAGGACGAAGAATCATCTGACGAATCAGATGACGAGGAAGAATCATCCGAGGAAACTCGTGATGAAAATTTTCTAACGGATATGTTAAGCCAGTTGGAAACATAG

Protein

MASDKDLHDDKPIMDSIPTQVEYSTLAKLLPSYDGNKRIALAFYIEGVENALELIANKNDYIMACLIRNNLSGNAVGALSESPGSKTWEDIKRTLQKKFGEFRTEIQLIQELMNTTRDNGSLDVFGDKIKILRNAFITMEPTRRIFYEQMALETFLDKLNPITAIHIRLKHVENLDQAITVAKREEIKFKSRLNQHNKTQKKILPNNNYSQKPYPANKKQPFPKKQTDNENQNKKKIHFQKEESDKDEESSDESDDEEESSEETRDENFLTDMLSQLET

Uniprot

A0A2A4JG12 A0A0L7L400 A0A0L7J1H5 A0A0L7KVM5 A0A1B0CQI1 A0A182G799 + More
T1D2B6 T1DGG0 V5GJT3 Q8IT59 A0A151IUJ0 A0A1Y1KDT0

Pubmed

26227816 26483478 24330624 12537573 28004739

EMBL

NWSH01001507 PCG71025.1 JTDY01003071 KOB70203.1 JTDY01023113 KOB39328.1 + More
JTDY01005283 KOB67155.1 AJWK01023607 AJWK01023608 AJWK01023609 JXUM01001358 JXUM01149899 KQ570883 KXJ68280.1 GALA01001678 JAA93174.1 GALA01001676 JAA93176.1 GALX01004112 JAB64354.1 AF541947 AAN34649.1 KQ980958 KYN11068.1 GEZM01087957 JAV58370.1

Proteomes

UP000218220 UP000037510 UP000092461 UP000069940 UP000249989 UP000078492 + More

PRIDE

Q8IT59

Pfam

PF03732 Retrotrans_gag

Interpro

IPR005162 Retrotrans_gag_dom + More
IPR036875 Znf_CCHC_sf

SUPFAM

SSF57756 SSF57756

ProteinModelPortal

A0A2A4JG12 A0A0L7L400 A0A0L7J1H5 A0A0L7KVM5 A0A1B0CQI1 A0A182G799 + More
T1D2B6 T1DGG0 V5GJT3 Q8IT59 A0A151IUJ0 A0A1Y1KDT0

KEGG

NA

GO

GO:0003676 GO:0008270

Length:

279

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01383

Exp number, first 60 AAs:

0.01321

Total prob of N-in:

0.04518

outside

1 - 279

Pi

250.091095

Theta

195.113968

Tajima's D

0.886828

CLR

0.223303

CSRT

0.625568721563922

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree