Silkworm Genome Informatics Database

Gene

KWMTBOMO04117

Pre Gene Modal

BGIBMGA002202

Annotation

PREDICTED:_putative_nuclease_HARBI1_[Bombyx_mori]

Location

Bomo_Chr7(+):11772230-11775435 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.442 Nuclear Reliability : 1.151 PlasmaMembrane Reliability : 1.301

CDS

ATGAAGGTTAAGGCAATTGTAGAAATTTTTCGAAGAAGTGTTCTGGCAAGTGAGCGACTTACAGCCACACAGAGGCAGCTGGGAGAAAAACCACTAAAAGTGAAACAAGATGTCATCACTAGGTGGAACTCAATATATGACATGTTTGAGAGGATTTTAGAAATCAAAAAAAGTATTATCTCCACTATTGCCATTGATTATCCCAGCACGCCTAATTTGGCCCCCGGTGACTTGCAGATTTTGATTAAAAGCTGCGAACTGTTTTTGCATTTTAAATCAGTCACAGAAATCATGAGTGGAGAAAAGCACGTGACGGTTTCTCAGATAATAGTCTTAGCAAATTTATTAAAAAAAAAATGTGAGGTTTTTATCCTGCAAGAGTCGGACAATATTCCTCAAAGCGTAAGGAATATGGCAATGCGGTTTCTGACAGATTTAACCACGCGATTTAGGAACGTGGAGGACAATAAATTACTTGCTGTATCTACTCTACTCGATCCTAGATTTAAGACGTACGGGTTCCCCGACGATAAAAAATCTAGTGTTGACAACGCAAAAAAATATCTTTCAAATATAGCAGCTAAAACGACCACTACCACAAATTTAGAACTTACAGAAAATATCATACAAAACGTAACTCCAGAAACTCCAGAAAAACCTAGCATTTGGGACGATTTCGATTTAAAAGTTGTAGATGCAGTAAAAAAACAGAACCCGACCGCAGCCGCAATAGTTGAAGTCTACAAGTATTTTGATGAGCCTCTTGTCAGCAGAAGAACCACTGATCCCATATTAAGGTGGTACATGAAACGGCGTGCGGTAGAGTTACTTTTATCGGAAATAATGCCACATGTAAAAGTAACCTGCAATCGAAATCATGGAGTTGCACCACTTCACCAGTTACTCCTAACCCTCCGATTTTATGCATTGGGTACAATGCTAATTTCTGTAGCGGATTTCGTGGGAGTGTCAAAATCGACCGCCAGCGTTCACGATATATCTGGAGCTATAGCCATACTGTACAATAAATACATTGTAATGCACCCTAATCATGTAGACAAGTTTTTTCAATATGGTCAGTTCCCACGTGTCCTGGGTGCAATTGACTGCACTCACATACGGATACAATCTCCAAATCACACGATAGGCGAAGAGCTCAGAAACCGAAAAGGCTACTTTTCATTAAATATTCAAGCCGTTTGTGATGCTGATTTGAAGTTTATGAATGTTGTAGCCCGGTGGCCTGGTTCTGCACATGATGCTACTATATTTAATAATTCTATTTTAAGAGCTCAGTGTGAAGCTGGGACTTTTGGGAATCGCTGGTTGCTGGCTGACAGTGCCTATCCAAACAGATGCTATATGTCGACACCAATTTTAAATCCTAGTACTAGAAATGAGTAA

Protein

MKVKAIVEIFRRSVLASERLTATQRQLGEKPLKVKQDVITRWNSIYDMFERILEIKKSIISTIAIDYPSTPNLAPGDLQILIKSCELFLHFKSVTEIMSGEKHVTVSQIIVLANLLKKKCEVFILQESDNIPQSVRNMAMRFLTDLTTRFRNVEDNKLLAVSTLLDPRFKTYGFPDDKKSSVDNAKKYLSNIAAKTTTTTNLELTENIIQNVTPETPEKPSIWDDFDLKVVDAVKKQNPTAAAIVEVYKYFDEPLVSRRTTDPILRWYMKRRAVELLLSEIMPHVKVTCNRNHGVAPLHQLLLTLRFYALGTMLISVADFVGVSKSTASVHDISGAIAILYNKYIVMHPNHVDKFFQYGQFPRVLGAIDCTHIRIQSPNHTIGEELRNRKGYFSLNIQAVCDADLKFMNVVARWPGSAHDATIFNNSILRAQCEAGTFGNRWLLADSAYPNRCYMSTPILNPSTRNE

Uniprot

H9IY69

Pubmed

19121390

EMBL

BABH01043199

Proteomes

UP000005204

PRIDE

H9IY69

Pfam

PF05699 Dimer_Tnp_hAT

Interpro

IPR012337 RNaseH-like_sf + More
IPR008906 HATC_C_dom

SUPFAM

SSF53098 SSF53098

ProteinModelPortal

H9IY69

KEGG

105841876 no KO assigned | (RefSeq) uncharacterized LOC105841876

GO

GO:0046983 GO:0003676 GO:0008270 GO:0004190 GO:0006508 GO:0042555 GO:0006260 GO:0016021 GO:0004672 GO:0048384

Length:

467

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.578639999999997

Exp number, first 60 AAs:

0.00018

Total prob of N-in:

0.00850

outside

1 - 467

Pi

192.220599

Theta

194.82599

Tajima's D

-0.697465

CLR

2315.192327

CSRT

0.199990000499975

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree