Silkworm Genome Informatics Database

Gene

KWMTBOMO04103

Pre Gene Modal

BGIBMGA008604

Annotation

PREDICTED:_zinc_finger_protein_with_KRAB_and_SCAN_domains_8-like_[Bombyx_mori]

Location

Bomo_Chr7(-):11184619-11195349 View in EpiBrowser

Transcription factor

zf-C2H2

Location in the cell

Nuclear Reliability : 3.473

CDS

ATGCCGCACCAGTGCGACGTCTGTGGCAAGATCCTAAGCACGAAGAGTAATCTGAAAGCTCATAAGATATGTCACACCGACGTGCGACCTTACAAGTGTACAGAGTGCCCGGCCACATTCAGGGGTCACAGCGCCCTGTTCCAACACAAGAAAGTGCACACGAAGGAGACCCCTTACCATTGCGAGTATTGTCCGAAACAATTCAGTCGGCGGACCGGCCTAGTCAATCACATACGGGTACATACAGGAGAAAAACTATACAGCTGTGGTATTTGCTTCAAGAATTTCGTTCAAAGCGCTCAGCTCTCTATACATGTAAAGAGGCATATGGGTGACAAACCGTTTTTGTGCCAGGACTGTGGAAAAGGTTTCCCAATTAAATCGGATCTTCGTGTGCACCAGCGCATCCACAACGGCGAGAAACCCTACAGCTGCCATCTCTGTACGAAGACCTTTGCCACGTCGGGGAACCTCGCCATACACATCCGGATACACAACAAAGAAGTTCGATACAATTGTCCAGTATGTCAGCGTGGTTTCGTGACGTGCAGCGCTTACAATGTCCATCTAAAACGTCACAAAGGACAAAAGGACTACCACTGCGAATGCGGAAAGACATTTTACACGTCATCAGCGCTAAAACAACACCGGGTCGTACACACCGGAGAGAAGAAATATCAGTGTAAAATATGCGAGAGGAAATTCACGCAAACTAGTCATTTAACGCGTCATTTTAAAAGGGACCATGCAAAACCCGGTGCACCTATACCCTCCTCGAATCAATATAAAGTCATCTTAAACGAGAACAAATCGCATCTGATGACAATGGAAAGGAGGATAAAGTTAAAAACCCTCAACAGCCATATCACATGTAAAATCTGCCGCGGTTATTTCATCGATGCTACCACTGTTACTGAATGTCTTCATACGTTCTGCAAGAGTTGCCTCGTAAAACACTTGGAGGAGAACAACACATGTCCGACATGCAACATCGTGATCCACCAGTCGCACCCGCTACAGTATATAAGCTTTGACAGGACCATGCAAGATATAGTTTACAAACTTGTTCCAGACTTACAGGATAATGAGTTGAAACGTGAGCGTGACTTCTATCGTGCCCGTGGACTGCCTTGTCCTAAGGACACTGCCCTCGCTGCAGACAAGCCTACAGGAGATGAGCCTGAGCAACCCGACAACACTGACTGCCATCGAAAAGATGAACAGGTCAATGTCTGTTTGGAATGTATATCAACATCATTACGAACACTCAAAAGAAGTTTCATTCGATGCTCAGCTCAGGCGACAATAACACACCTCAAGAAATTTGTAGCTAAGAAAGTATTGAATGGAATCGACCAATACAGAGAGATTGACATATTGTGCAATGACGAATTACTAGGCAAGGACCATACTCTGAAGTTTGTATATGTGACTCGTTGGAGGTTTCGGGATCCACCTCTTCGTCTCCAATATAGACCTAAGATTGATTTATAA

Protein

MPHQCDVCGKILSTKSNLKAHKICHTDVRPYKCTECPATFRGHSALFQHKKVHTKETPYHCEYCPKQFSRRTGLVNHIRVHTGEKLYSCGICFKNFVQSAQLSIHVKRHMGDKPFLCQDCGKGFPIKSDLRVHQRIHNGEKPYSCHLCTKTFATSGNLAIHIRIHNKEVRYNCPVCQRGFVTCSAYNVHLKRHKGQKDYHCECGKTFYTSSALKQHRVVHTGEKKYQCKICERKFTQTSHLTRHFKRDHAKPGAPIPSSNQYKVILNENKSHLMTMERRIKLKTLNSHITCKICRGYFIDATTVTECLHTFCKSCLVKHLEENNTCPTCNIVIHQSHPLQYISFDRTMQDIVYKLVPDLQDNELKRERDFYRARGLPCPKDTALAADKPTGDEPEQPDNTDCHRKDEQVNVCLECISTSLRTLKRSFIRCSAQATITHLKKFVAKKVLNGIDQYREIDILCNDELLGKDHTLKFVYVTRWRFRDPPLRLQYRPKIDL

Uniprot

H9JGF7

Pubmed

19121390

EMBL

BABH01039476 BABH01039477 BABH01039478 BABH01039479

Proteomes

UP000005204

PRIDE

H9JGF7

Pfam

PF00096 zf-C2H2 + More
PF16207 RAWUL

Interpro

IPR032443   RAWUL        + More
IPR013083   Znf_RING/FYVE/PHD
IPR036236   Znf_C2H2_sf
IPR013087   Znf_C2H2_type

SUPFAM

SSF57667 SSF57667

Gene 3D

3.30.40.10

ProteinModelPortal

H9JGF7

PDB

5V3M E-value=1.65051e-43, Score=444

KEGG

101747120 no KO assigned | (RefSeq) zinc finger protein with KRAB and SCAN domains 8-like

GO

GO:0003676 GO:0046872 GO:0005515 GO:0008270 GO:0006270 GO:0042555 GO:0006260 GO:0016021 GO:0004672 GO:0048384

Length:

497

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00397

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00473

outside

1 - 497

Pi

2.848998

Theta

186.041376

Tajima's D

0.059695

CLR

0.979743

CSRT

0.387080645967702

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics