Silkworm Genome Informatics Database

Gene

KWMTBOMO04102

Pre Gene Modal

BGIBMGA008605

Annotation

PREDICTED:_coiled-coil_domain-containing_protein_R3HCC1L_isoform_X1_[Bombyx_mori]

Location

Bomo_Chr7(-):11128630-11183139 View in EpiBrowser

Location in the cell

Nuclear Reliability : 3.803

CDS

ATGAGGTACGATTTCATCGCCAAACTGGGTGCCAAAACGGTCGAAAGGTTTCTGAGCCTTGCGGACAGTAATTTCCTGGACGATGTTAACGACGACTTAAAATGTTATTTAGCCGCAAGAAGAGTTGACAGTGTGCTGGTGTTTCCACCAGTTAGCAACTACAGAAGGTTCCTGATCCATCAGTGTGTGGAGCAGTCAGGCTTGCCGGAGCTCACCACCTTTTCTATAGGTGTGAGCGACGAGAGACGCACTGTGGTTTGCTTCAGAGAGAGGCTATTAAGTGATGAGGCTTGCGCGAGACCAACCATGGGGCTGACACATGCCGACCATGACGACCATGCCAACATTTCACATACAGACGCGGTGGTGGGGGCCAGCAGGAGTCGCCGCGAACTCAGCGAAAAGATCAGCAGAGCTGGTCCCGCGAAGCCGCGTCGTCCCGACCGCGCGGTCTACGTGCCCAGAGCTCTACGGCAGGCCGACAACGCATCATCGGACGAAAGTAAAACCGAGAACAACAAACGGACCAGCCAAATTAACGAGATACCAAAGTGCCCTAAGTCGCCAGCGCCGAGAGACAAGTCCGCTCACGGCACACCCAGGAAGTCCTTAGACAAAACCTTCTGCAACGTCTACGTGCCGCCGCACCTCAGGAATCAGAGATCTCCTCAAGCCGCTAACGACTCGCCAGACGTCCAGACGACGTCCTCCGACGCAAACGAATCCGTGCCTTCAGGCTACCAAGTGCCAAATAGTGAGAGTGCAATATCGTTTAGTGCCGAGAATTTAGGTGACGTTGAAGTGAACGAGAGTTTTTATATAGGTGATTATTTCGCGAACGGACAGCTAGGGTTCTACAGCCCGAGCTATTACGGCGAGTACGCGGACCCGAGCCGGGAATACGGGTCGGACCGGACCCAGTGGCGGACCAATGAGCTAGACGACAACATGGCGATGAACGAACAGAATCAAAGCAATATTATAGATAAGGATTATATATACGAGAAAGATGAAGATTACGAGAAGGAAGAGCTTAAAAGAGCTTCGCAGGAGATCAACAGGAGCAGCAAGAGGATAATAAAGCAGAGTTTCGATTCTGACGTGCTCGTTATATCGGATCCAGCTGACGAAACAGAAGAGAAGACAGACGTTTCGGTCGTGCCAGAGAAGGACGTGAAAGAGCCAGAAGCGAAGAAAACCAAACCAAAACTTGAGCCCAAAGTTTCTTTGAAGCGGGAAGATAACGACTGGGACGCGGTTTTCGATGACACGGGCGAGTGCCTTGACCCGTCTCTGTTGGAGGAGCTGACGACGACCGTAGGCAGGGTCCACATCAGCAAAGCCAAGAACAACTACGAGCAGTACCAGACCAGGGGTCAGTCGTTGTTCAACGGTCCCTACGACGAGACGTTTGGTCACGTCGTCGAAGTGTACGACTTCCCTAGTGAATTCAAAACGAACGATTTGTTCTCGTTGTTCAGTGAATATAAGGACACCGGCTTCGAGATTAAGTGGGTCGATGACACGCACGCCCTGATCGTCTTCAGCAGCGCCAAGATCGCGTCAGAAGTTCTAGCGACGCAGCGGACGCTGGCTAAGTGTCGACCTCTTCACGCCGCCACTCTTGAATCGAGGAACAAAGCTAAGAAATGCGCCGAGTTCCTACAACCGTACAGGCAGCGGCCGGAGACGTGCACGGCGCTGGCGCGGCGCCTCGTGTCAACCGCGCTGGGTGTGCGGCTTAGCACCGCACGCCAGGAGCGGGCCGAGGAGACCAAGCTGCTCACCAGGGCTCGAGAGAAGAAGCGTCAAGCGGCGCTTCACAAGGAGGCCGCGTGGGATGGCTCGCTGGCCAATCGATCGCTTGCTGACTCCTGA

Protein

MRYDFIAKLGAKTVERFLSLADSNFLDDVNDDLKCYLAARRVDSVLVFPPVSNYRRFLIHQCVEQSGLPELTTFSIGVSDERRTVVCFRERLLSDEACARPTMGLTHADHDDHANISHTDAVVGASRSRRELSEKISRAGPAKPRRPDRAVYVPRALRQADNASSDESKTENNKRTSQINEIPKCPKSPAPRDKSAHGTPRKSLDKTFCNVYVPPHLRNQRSPQAANDSPDVQTTSSDANESVPSGYQVPNSESAISFSAENLGDVEVNESFYIGDYFANGQLGFYSPSYYGEYADPSREYGSDRTQWRTNELDDNMAMNEQNQSNIIDKDYIYEKDEDYEKEELKRASQEINRSSKRIIKQSFDSDVLVISDPADETEEKTDVSVVPEKDVKEPEAKKTKPKLEPKVSLKREDNDWDAVFDDTGECLDPSLLEELTTTVGRVHISKAKNNYEQYQTRGQSLFNGPYDETFGHVVEVYDFPSEFKTNDLFSLFSEYKDTGFEIKWVDDTHALIVFSSAKIASEVLATQRTLAKCRPLHAATLESRNKAKKCAEFLQPYRQRPETCTALARRLVSTALGVRLSTARQERAEETKLLTRAREKKRQAALHKEAAWDGSLANRSLADS

Uniprot

A0A2A4K505 A0A0N1PEP8 A0A3S2P944 A0A194RJF4 A0A1E1WQ09 A0A212FDF3 + More
A0A0L7QMP3 A0A2A3EEM1

Pubmed

26354079 22118469

EMBL

NWSH01000139 PCG79149.1 KQ459356 KPJ01295.1 RSAL01000183 RVE44879.1 + More
KQ460075 KPJ17963.1 GDQN01002629 GDQN01001974 JAT88425.1 JAT89080.1 AGBW02009076 OWR51728.1 KQ414885 KOC59860.1 KZ288266 PBC30233.1

Proteomes

UP000218220 UP000053268 UP000283053 UP000053240 UP000007151 UP000053825 + More
UP000242457

Pfam

PF10309   NCBP3        + More
PF01424   R3H
PF16207   RAWUL

Interpro

IPR012677   Nucleotide-bd_a/b_plait_sf        + More
IPR019416   NCBP3
IPR035979   RBD_domain_sf
IPR039884   R3HC1/R3HCL
IPR001841   Znf_RING
IPR036867   R3H_dom_sf
IPR001374   R3H_dom
IPR013083   Znf_RING/FYVE/PHD
IPR017907   Znf_RING_CS
IPR032443   RAWUL

SUPFAM

SSF54928 SSF54928 + More
SSF82708 SSF82708

Gene 3D

3.30.70.330 3.30.1370.50 3.30.40.10

ProteinModelPortal

A0A2A4K505 A0A0N1PEP8 A0A3S2P944 A0A194RJF4 A0A1E1WQ09 A0A212FDF3 + More
A0A0L7QMP3 A0A2A3EEM1

PDB

3D45 E-value=0.00940737, Score=94

KEGG

101746985 no KO assigned | (RefSeq) coiled-coil domain-containing protein R3HCC1L

GO

GO:0000340 GO:0003729 GO:0003676 GO:0000166 GO:0009055 GO:0020037 GO:0006270 GO:0042555 GO:0006260 GO:0016021 GO:0004672 GO:0048384

PANTHER

PTHR21678

Length:

625

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00121

Exp number, first 60 AAs:

0.00016

Total prob of N-in:

0.00042

outside

1 - 625

Pi

251.982282

Theta

181.711022

Tajima's D

1.535078

CLR

0.18652

CSRT

0.793060346982651

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics