Gene

KWMTBOMO04093

Pre Gene Modal

BGIBMGA008630

Annotation

PREDICTED:_protein_FAM160B1-like_[Amyelois_transitella]

Location

Bomo_Chr7(+):11045510-11060044      View in EpiBrowser

Full name

Protein FAM160B1      

Location in the cell

Nuclear   Reliability : 1.926

CDS

ATGCTTAGCAGATTCTCCAACGTGCTGCAAACTGCTGCCGATGTCTTGGCACCTCCAGCAACGAGACTCGAAGACTTTGAGTACCATTGGAAGATGATACTTAACTTCTATGAGCGGTTTGATGATAATTGTAAAATTCACATTGAAGATACTAAGATACCTCATCACCTGCATCAGATGCTACAGCTCATTGTTGATGAAGAAAAAGAACAACAAGGTGGCACGGTCGGTCCATGCCTGGAAGCCATAGTTCAGCGGTCCATATGCCTGTTAGATGCATTGACTGCGCTCGCGGCGGCCGACCGACCGCCCGGCGCGAGGTCATTGGCCCTAACAGCTGCTACGGCACTGCTGAGGAGAACTAAACAGCCTTGCGTCAATAGCGTTCATATTTATCGTCCCTTACAGCGAATGCTAGTCCAGTGCAACGAAAGTCCGGCGTCGCCTACAGAGAAAGAAGAAGTCGAATTGCTGCTGACTCTGTGCGGTTTGGTCCGCAAGGAGCCAGGCCTTGCCAACATCTTCACGACACCGTTCGTGGAAGACAAAACCTCGTTACTAACTATACCGGAGGACATTCAGAAACTGATACCACTGAAGAAAGTGCACACGCCAAGAAAGAATCCTTTGTTCGTGGATCTGACCCAGAATCAGCTACCGAACGTGTCCATAATCAGGACCTACGACAGGGACGATAGCAGTAACGGCGCCGAGTCCTTGGCAGATGACGTGTCCTGCAAGAGTCAGAAGACATTGTACGATGAAAATGACAAGTTTTTGTTAATAGATTTGCTGCTTTCGTATTTGGACAGCGCTGATAACCAAGTAGTACTGAGAGCCTGCGAGGGGATAATGATAGTGTCGTCGCTGCCGGAGGAGGACATCGCCAACCTGGTGACGAGCTGCAGCCCGGCCTGCGAGACCATCGTGGACAAGCTCGCGGCCAGGTACCGCCGCATCCCGCCCACCGTCGACCCCAACGACGTCGACCAGCTCAACATCACCTGGGCATACGTAGCACAAGACTTCGGTGACAAGTCTTATTCCAAGTTCCACGGCTACAGAGAACTGACCACATTTTTCTCGTGGCTGGATTATTGCGATACACTCATGAAGGAATGTCACCAGAGCATAGCGTCGCACCTGTCGAGGACGTTCCGACAGAACTTTCTGGAGGGCACGGCGGAGGCCGGGGTCACCGACCTGCGCCTCGCCGTGCTGGCCACCGCCGTGCTCAGCAAGTGTCTCAAGGTCGTCGACTCCACTGACCTCATTAACGAGTTCTCCAACTGGCTGGTGGGGGACGGCGAGGTGGCGGAGTGGCCTCTACTGCATACCCTCATCTCGAACTGCCTCTCGGACAACTACGACCTGGCATTAGAAACATTAAGGTTCTTTGAGAGTATAATAGAGAAGGGCACGGAGCACAGCATGGAGCGACTGGTACTGTCTCGGGTAGGGACGCGCGGGGAGAGGGAAACGAACAGGGAGGCAATGAAGCAGCTACAACACGAGGAACACGTGAGTGAGCAAATCAACGACATCCTCTCACACGAGGGGCTCGACCTCGGCGGACACGCGGGCGCCGCCGAAAACATACACACCATCGTCAACAGTTACCTGCTGTTGCTCCCGCGCGCCCTCCTCTCCGACCCGGTGGGCTCCGACTACGAACATTACATACACGACGCCCATAGACACTATCAGGTAAACTGTCTTATTTTTTTAATTGAAATCGATCGGTCAGGTCTGTGGTGA

Protein

MLSRFSNVLQTAADVLAPPATRLEDFEYHWKMILNFYERFDDNCKIHIEDTKIPHHLHQMLQLIVDEEKEQQGGTVGPCLEAIVQRSICLLDALTALAAADRPPGARSLALTAATALLRRTKQPCVNSVHIYRPLQRMLVQCNESPASPTEKEEVELLLTLCGLVRKEPGLANIFTTPFVEDKTSLLTIPEDIQKLIPLKKVHTPRKNPLFVDLTQNQLPNVSIIRTYDRDDSSNGAESLADDVSCKSQKTLYDENDKFLLIDLLLSYLDSADNQVVLRACEGIMIVSSLPEEDIANLVTSCSPACETIVDKLAARYRRIPPTVDPNDVDQLNITWAYVAQDFGDKSYSKFHGYRELTTFFSWLDYCDTLMKECHQSIASHLSRTFRQNFLEGTAEAGVTDLRLAVLATAVLSKCLKVVDSTDLINEFSNWLVGDGEVAEWPLLHTLISNCLSDNYDLALETLRFFESIIEKGTEHSMERLVLSRVGTRGERETNREAMKQLQHEEHVSEQINDILSHEGLDLGGHAGAAENIHTIVNSYLLLLPRALLSDPVGSDYEHYIHDAHRHYQVNCLIFLIEIDRSGLW

Similarity

Belongs to the UPF0518 family.

Keywords

Complete proteome   Reference proteome   Alternative splicing   Polymorphism  

Feature

chain  Protein FAM160B1
splice variant  In isoform 2.
sequence variant  In dbSNP:rs17853717.

Uniprot

A0A2A4K4I2   A0A3S2N983   A0A2A4K5H0   A0A194RKV1   A0A194Q154   A0A212FCZ3   + More
A0A0L7LDV4   A0A1S4FH46   A0A182G9A2   A0A182GKC3   A0A1Q3F5H6   A0A1W5AYZ1   T1IIV5   A0A3Q0R8J3   G3X6C8   A0A250YLH2   B8A6I3   A0A2K5TMH6   A0A2K6DJF0   A0A2K5R094   A4IG57   A0A3B4G762   A0A2K6DJE5   A0A2K5TMG4   A0JNG7   A0A3P8QVD8   A0A3P9BV65   A0A3B4ADK3   A0A2I3TI67   B8A6I4   A0A3Q3IUR7   A0A3Q2VKU2   H2Q2L9   W5N5T4   A0A2J8W6X1   U3E924   A0A0D9QXX7   A0A2K5NC97   U3DJ61   A0A2J8W6Z4   A0A096NTS7   Q5W0V3-2   A0A3B3RI00   A0A2K5NC82   H9ESE8   A0A3Q4HDP0   A0A3Q4HAJ1   Q5W0V3   A0A096NTS6   I3JV87   A0A2I2Z5Z5   A0A3P8XUA4   G3RZX4   G1PXG0   S7N730   A0A3Q7R7A0   A0A2K6F2V3   A0A3Q7RU55   A0A1D5RAL8   A0A2K6F2U5   A0A3Q7PRI2   A0A3P8ZRF7   A0A2U3WTX8   A0A3B3RJT4   A0A3P8ZRH5   A0A3Q3M3Q1   F6Q4S8   M3X3J7   A0A2Y9DHT5   A0A1D5P0U6   A0A3B4THC3   A0A3B4THI2   A0A0K8RWH5   A0A226MR75   A0A3Q1B5X8   H3B5R3   H0XE78   A0A3P8UGJ3   J3S8Q2   A0A1D5QKB6   A0A2Y9J4N9   A0A3L8SIV9   H0ZL31   A0A1W7RGN4   G3UMA0   A0A226PQH7   A0A0F8C3X6   F7BGL9   A0A2Y9I1S5   G3NHZ0   A0A218UUE7   A0A182S849   Q8CDM8-2   F6XT73   A0A151NUU2  

Pubmed

26354079    22118469    26227816    17510324    26483478    19393038    + More
28087693    23594743    25186727    25463417    16136131    25243066    17974005    15164054    15489334    10997877    12168954    24275569    29240929    25319552    22398555    25069045    21993624    17431167    17975172    15592404    25727380    9215903    23025625    30282656    20360741    26358130    24621616    25835551    19892987    16141072    12693553    21183079    17495919    22293439   

EMBL

NWSH01000139    PCG79165.1    RSAL01000183    RVE44882.1    PCG79164.1    KQ460075    + More
KPJ17955.1    KQ459582    KPI98719.1    AGBW02009118    OWR51616.1    JTDY01001508    KOB73703.1    JXUM01008424    JXUM01008425    KQ560260    KXJ83499.1    JXUM01069911    JXUM01069912    KQ562578    KXJ75560.1    GFDL01012224    JAV22821.1    JH430212    GFFW01000422    JAV44366.1    BX957309    AQIA01072680    AQIA01072681    AQIA01072682    AQIA01072683    BC134937    AAI34938.1    BC126677    AACZ04051197    NBAG03000216    PNI81647.1    GABC01007295    GABF01000738    GABD01006519    GABE01007109    JAA04043.1    JAA21407.1    JAA26581.1    JAA37630.1    PNI81648.1    AHAT01023224    NDHI03003398    PNJ65519.1    GAMT01008509    GAMS01001015    JAB03352.1    JAB22121.1    AQIB01042413    GAMR01004008    GAMQ01004605    GAMP01005627    JAB29924.1    JAB37246.1    JAB47128.1    PNJ65520.1    AHZZ02036108    CR933692    AL137025    BC037207    AB046820    JU321551    JU472691    AFE65307.1    AFH29495.1    AERX01006524    CABD030076293    CABD030076294    CABD030076295    CABD030076296    AAPE02016454    KE163614    EPQ12864.1    JSUE03044376    JSUE03044377    JSUE03044378    AANG04000273    AADN05000306    GBKC01001280    JAG44790.1    MCFN01000520    OXB57762.1    AFYH01064672    AFYH01064673    AFYH01064674    AAQR03046808    JU174532    GBEX01001218    AFJ50058.1    JAI13342.1    QUSF01000019    RLW02300.1    ABQF01046917    GDAY02001126    JAV50301.1    AWGT02000026    OXB82336.1    KQ042804    KKF10427.1    MUZQ01000140    OWK56982.1    AK029835    AK046518    AK172373    BC023048    BC062949    BC079562    AK122530    AKHW03001922    KYO40534.1   

Proteomes

UP000218220    UP000283053    UP000053240    UP000053268    UP000007151    UP000037510    + More
UP000069940    UP000249989    UP000192224    UP000261340    UP000009136    UP000000437    UP000233100    UP000233120    UP000233040    UP000261460    UP000265100    UP000265160    UP000261520    UP000002277    UP000261600    UP000264840    UP000018468    UP000008225    UP000029965    UP000233060    UP000028761    UP000005640    UP000261540    UP000261580    UP000005207    UP000001519    UP000265140    UP000001074    UP000286641    UP000233160    UP000286640    UP000006718    UP000245340    UP000261660    UP000011712    UP000248480    UP000000539    UP000261420    UP000198323    UP000257160    UP000008672    UP000005225    UP000265080    UP000248482    UP000276834    UP000007754    UP000007646    UP000198419    UP000002281    UP000248481    UP000007635    UP000197619    UP000075901    UP000000589    UP000002280    UP000050525   

PRIDE

A0JNG7    B8A6I4    Q5W0V3    A0A1D5P0U6    Q8CDM8   

Pfam

PF10257   RAI16-like

Interpro

IPR019384   RetinoicA-induced_16-like        + More
IPR016024   ARM-type_fold       

SUPFAM

SSF48371   SSF48371       

ProteinModelPortal

A0A2A4K4I2   A0A3S2N983   A0A2A4K5H0   A0A194RKV1   A0A194Q154   A0A212FCZ3   + More
A0A0L7LDV4   A0A1S4FH46   A0A182G9A2   A0A182GKC3   A0A1Q3F5H6   A0A1W5AYZ1   T1IIV5   A0A3Q0R8J3   G3X6C8   A0A250YLH2   B8A6I3   A0A2K5TMH6   A0A2K6DJF0   A0A2K5R094   A4IG57   A0A3B4G762   A0A2K6DJE5   A0A2K5TMG4   A0JNG7   A0A3P8QVD8   A0A3P9BV65   A0A3B4ADK3   A0A2I3TI67   B8A6I4   A0A3Q3IUR7   A0A3Q2VKU2   H2Q2L9   W5N5T4   A0A2J8W6X1   U3E924   A0A0D9QXX7   A0A2K5NC97   U3DJ61   A0A2J8W6Z4   A0A096NTS7   Q5W0V3-2   A0A3B3RI00   A0A2K5NC82   H9ESE8   A0A3Q4HDP0   A0A3Q4HAJ1   Q5W0V3   A0A096NTS6   I3JV87   A0A2I2Z5Z5   A0A3P8XUA4   G3RZX4   G1PXG0   S7N730   A0A3Q7R7A0   A0A2K6F2V3   A0A3Q7RU55   A0A1D5RAL8   A0A2K6F2U5   A0A3Q7PRI2   A0A3P8ZRF7   A0A2U3WTX8   A0A3B3RJT4   A0A3P8ZRH5   A0A3Q3M3Q1   F6Q4S8   M3X3J7   A0A2Y9DHT5   A0A1D5P0U6   A0A3B4THC3   A0A3B4THI2   A0A0K8RWH5   A0A226MR75   A0A3Q1B5X8   H3B5R3   H0XE78   A0A3P8UGJ3   J3S8Q2   A0A1D5QKB6   A0A2Y9J4N9   A0A3L8SIV9   H0ZL31   A0A1W7RGN4   G3UMA0   A0A226PQH7   A0A0F8C3X6   F7BGL9   A0A2Y9I1S5   G3NHZ0   A0A218UUE7   A0A182S849   Q8CDM8-2   F6XT73   A0A151NUU2  

KEGG

101746428    no KO assigned | (RefSeq) protein FAM160B1-like

GO

GO:0016021   GO:0005488   GO:0035091   GO:0009055   GO:0020037   GO:0006270   GO:0042555   GO:0006260   GO:0004672   GO:0048384  

Length:

585

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00183

Exp number, first 60 AAs:

0.00019

Total prob of N-in:

0.00038

outside

1  -  585

 

 

Pi

335.725647

Theta

181.164235

Tajima's D

1.701

CLR

0.173523

CSRT

0.827658617069147

Interpretation

Uncertain