Gene

KWMTBOMO04090

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr7(-):11011022-11012429      View in EpiBrowser

Location in the cell

Mitochondrial   Reliability : 1.955

CDS

ATGGCACTATACGGGGCTCCCGTATGGTGCCACGCCCTGACCCGCAAGAACGTCGCGGCGCTGCGACGTCCGCAGCGCGCGATCGCGGTCAGGGCGATCCGAGGATACCGCACCGTCTCCTTCGAGGCGGCGTGCTTGCTCGCCGGGGCGCCACCCTGGGACCTGGAGGCGGAGGCGCTCGCTGCCGATTACCGGTGGCGAAGCGACCTTCGTTCTAGGGGGGAAGGGCGCCCCGGCGAAGGAGTAGTTCGAGCGCGGAGGCTCCAATCTCGGCGGTCCGTGCTGGAGGCGTGGTCTCGCCGCTTGGCGGACCCGTCGGCCGGCCTCCGTACCGTCGAGGCGGTCCGCCCGGTTCTCGCGGACTGGGTGGGCCGCGACCGCGGATGCCTCACCTTCCGGCTGACGCAAATGTTGACCGGCCATGGTTGTTTTGGCCGGTACCTTTTCAAAATAGCCGGAAGGGAACCGACGGCGCAGTGCCACCACTGCGCTGACCGCGACGAGGAAGACACAGCGGAACACGCATTGGCGCGTTGCTCTGGATTTGACGAGCAACGCGCCGCCCTCGTCGCGGTCATTGGAGAGGACCTCTCGCTGCCGCGCGTCGTGGCTACGATGCTCGGCAGCGAGGCGTCCTGGAAGGCGATGCTCGACTTCTGCGAGTCCACCATATCGCAGAAGGAGGCGGCGGAGCGAGAGAGGGAGAGCTCTTCCCTTTCCGCACCGATCCGTCGCCGTCGAGCCGGGGGCCGGAGGCGGGAATACGCCCGTACGTCCCGGCCCCTGTAG

Protein

MALYGAPVWCHALTRKNVAALRRPQRAIAVRAIRGYRTVSFEAACLLAGAPPWDLEAEALAADYRWRSDLRSRGEGRPGEGVVRARRLQSRRSVLEAWSRRLADPSAGLRTVEAVRPVLADWVGRDRGCLTFRLTQMLTGHGCFGRYLFKIAGREPTAQCHHCADRDEEDTAEHALARCSGFDEQRAALVAVIGEDLSLPRVVATMLGSEASWKAMLDFCESTISQKEAAERERESSSLSAPIRRRRAGGRRREYARTSRPL

Cofactor

FAD

Similarity

Belongs to the GMC oxidoreductase family.

Uniprot

Q5KTM7   Q868Q4   A0A2W1B333   A0A2W1BDU5   A0A2W1BSQ5   Q8MY27   + More
Q8MY33   Q8MY31   Q8MY35   A0A3S2N998   A0A0J7KCI1   A0A0J7N1D9   A0A2W1C3J5   A0A2H1WNZ5   A0A0J7KJB9   A0A0J7N7H9   O01419   A0A0J7MZM4   A0A194R5D3   A0A0J7MY07   A0A3L8DDS1   A0A0J7KCQ3   A0A0J7KIY3   E2BVR6   A0A0J7KS67   A0A0J7KIY5   A0A3L8DDV9   A0A3S2LNH8   A0A2H1VYR8   A0A3L8D2G3   A0A0J7N7S8   A0A0J7JZF7   A0A0J7KJG6   A0A0J7JZ13   A0A0J7NEG9   A0A0J7KM81   A0A0J7JXN3   A0A0J7KLT9   A0A0J7KIW1   A0A0J7KQK3   A0A0J7KJH4   A0A0J7KPZ3   A0A0J7KIM6   A0A0J7KFG9   A0A0J7KMU1   A0A0J7K3R6   J9KZ24   A0A0J7K3F1   A0A0L7R7C3   A0A0J7KL06   J9KJG8   A0A0J7NMN5   A0A0J7KJ07   A0A0J7K840   A0A0Q9WRU0   A0A1B6HLL2   A0A0J7KRB8   A0A3L8DIL1   A0A0J7KHX7   A0A2S2QUS9   J9KRD0   A0A0J7KPR0   A0A2H8TR36   A0A0J7KYD2   A0A0J7MX22   J9KV04   A0A2S2P557   J9KLZ3   A0A0J7K6Z4  

Pubmed

12644555    28756777    9092665    26354079    30249741    20798317    + More
17994087   

EMBL

AB126050    BAD86650.1    AB090825    BAC57926.1    KZ150386    PZC71062.1    + More
KZ150308    PZC71477.1    KZ149950    PZC76665.1    AB078935    BAC06462.1    AB078930    BAC06454.1    AB078931    BAC06456.1    AB078929    BAC06452.1    RSAL01000481    RVE41577.1    LBMM01009501    KMQ88083.1    LBMM01012027    KMQ86470.1    KZ149896    PZC78733.1    ODYU01009945    SOQ54696.1    LBMM01006538    KMQ90523.1    LBMM01008861    KMQ88580.1    D85594    BAA19776.1    LBMM01012957    LBMM01012956    KMQ85900.1    KMQ85901.1    KQ460685    KPJ12887.1    LBMM01014132    KMQ85305.1    QOIP01000009    RLU18544.1    LBMM01009494    KMQ88097.1    LBMM01006909    KMQ90209.1    GL450953    EFN80213.1    LBMM01003679    KMQ93242.1    LBMM01006954    KMQ90166.1    QOIP01000010    RLU18098.1    RSAL01003504    RVE40273.1    ODYU01005282    SOQ45985.1    QOIP01000031    RLU14697.1    LBMM01008682    KMQ88705.1    LBMM01019838    KMQ83439.1    LBMM01006671    KMQ90407.1    LBMM01019839    KMQ83438.1    LBMM01006110    KMQ90925.1    LBMM01005634    KMQ91349.1    LBMM01024024    KMQ82631.1    LBMM01005733    KMQ91252.1    LBMM01006725    KMQ90373.1    LBMM01004272    KMQ92618.1    LBMM01006657    KMQ90417.1    LBMM01004505    KMQ92346.1    LBMM01007036    KMQ90099.1    LBMM01008349    KMQ88951.1    LBMM01005216    KMQ91703.1    LBMM01015018    KMQ84954.1    ABLF02006132    LBMM01015025    KMQ84953.1    KQ414641    KOC66782.1    LBMM01006063    KMQ90967.1    ABLF02041886    LBMM01003245    KMQ93755.1    LBMM01006662    KMQ90413.1    LBMM01011877    KMQ86578.1    CH963857    KRF98317.1    GECU01032129    JAS75577.1    LBMM01003988    KMQ92922.1    QOIP01000007    RLU20280.1    LBMM01007088    KMQ90053.1    GGMS01012210    MBY81413.1    ABLF02026677    ABLF02032994    ABLF02059021    ABLF02064578    LBMM01004634    KMQ92224.1    GFXV01003903    MBW15708.1    LBMM01002052    KMQ95336.1    LBMM01014909    KMQ85000.1    ABLF02004674    ABLF02004675    ABLF02004676    ABLF02011637    GGMR01011974    MBY24593.1    ABLF02023401    ABLF02029423    ABLF02060278    LBMM01012595    KMQ86127.1   

Proteomes

UP000283053    UP000036403    UP000053240    UP000279307    UP000008237    UP000007819    + More
UP000053825    UP000007798   

PRIDE

Q5KTM7    Q868Q4    O01419   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07776   zf-AD
PF00096   zf-C2H2
PF01553   Acyltransferase
PF03372   Exo_endo_phos
PF01421   Reprolysin
PF00732   GMC_oxred_N
PF17919   RT_RNaseH_2

Interpro

IPR000477   RT_dom        + More
IPR036691   Endo/exonu/phosph_ase_sf       
IPR005135   Endo/exonuclease/phosphatase       
IPR012934   Znf_AD       
IPR013087   Znf_C2H2_type       
IPR036236   Znf_C2H2_sf       
IPR002123   Plipid/glycerol_acylTrfase       
IPR024079   MetalloPept_cat_dom_sf       
IPR001590   Peptidase_M12B       
IPR036188   FAD/NAD-bd_sf       
IPR012132   GMC_OxRdtase       
IPR000172   GMC_OxRdtase_N       
IPR001878   Znf_CCHC       
IPR036875   Znf_CCHC_sf       
IPR041577   RT_RNaseH_2       

SUPFAM

SSF56219   SSF56219        + More
SSF57667   SSF57667       
SSF51905   SSF51905       
SSF57756   SSF57756       

Gene 3D

3.60.10.10     3.40.390.10     3.50.50.60    

ProteinModelPortal

Q5KTM7   Q868Q4   A0A2W1B333   A0A2W1BDU5   A0A2W1BSQ5   Q8MY27   + More
Q8MY33   Q8MY31   Q8MY35   A0A3S2N998   A0A0J7KCI1   A0A0J7N1D9   A0A2W1C3J5   A0A2H1WNZ5   A0A0J7KJB9   A0A0J7N7H9   O01419   A0A0J7MZM4   A0A194R5D3   A0A0J7MY07   A0A3L8DDS1   A0A0J7KCQ3   A0A0J7KIY3   E2BVR6   A0A0J7KS67   A0A0J7KIY5   A0A3L8DDV9   A0A3S2LNH8   A0A2H1VYR8   A0A3L8D2G3   A0A0J7N7S8   A0A0J7JZF7   A0A0J7KJG6   A0A0J7JZ13   A0A0J7NEG9   A0A0J7KM81   A0A0J7JXN3   A0A0J7KLT9   A0A0J7KIW1   A0A0J7KQK3   A0A0J7KJH4   A0A0J7KPZ3   A0A0J7KIM6   A0A0J7KFG9   A0A0J7KMU1   A0A0J7K3R6   J9KZ24   A0A0J7K3F1   A0A0L7R7C3   A0A0J7KL06   J9KJG8   A0A0J7NMN5   A0A0J7KJ07   A0A0J7K840   A0A0Q9WRU0   A0A1B6HLL2   A0A0J7KRB8   A0A3L8DIL1   A0A0J7KHX7   A0A2S2QUS9   J9KRD0   A0A0J7KPR0   A0A2H8TR36   A0A0J7KYD2   A0A0J7MX22   J9KV04   A0A2S2P557   J9KLZ3   A0A0J7K6Z4  

KEGG

105841899    no KO assigned | (RefSeq) uncharacterized LOC105841899

GO

GO:0003964   GO:0016746   GO:0016021   GO:0050660   GO:0016614   GO:0008270   GO:0003676  

Length:

262

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01609

Exp number, first 60 AAs:

0.01208

Total prob of N-in:

0.02297

outside

1  -  262

 

 

Pi

137.69284

Theta

64.088972

Tajima's D

2.486284

CLR

0.019302

CSRT

0.943652817359132

Interpretation

Uncertain