Silkworm Genome Informatics Database

Gene

KWMTBOMO04056

Annotation

reverse_ribonuclease_integrase?_partial_[Lasius_niger]

Location

Bomo_Chr7(-):9901870-9906550 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.372 Nuclear Reliability : 1.425

CDS

ATGGTTTTTACGATAAAATTTTTATCCCTACAAAAAACTGAACTGGAATACGAAGTTGCGATAAGAGGTGAGACCCCCGGTGCTACGGTGGCTGATCTTAGGAAACAGATTAGCAAATTAAGTCAATCTTTTCCTTCAGAAGATGTATTATGTTCTCATCTCGAACCCCTAGATGATCTTCAAGCTGTTTTGGACTTGCTGAATAAAGTCAATGCAAGTCTCGAGTCAAGCCCTACTGATAAAAGTACATTATCGCGCATAGAAAATATTTTTCATCACCTTTATCATAGGATCAACAGAATAGTGGTTGATGAAGTAGAGAAGCCGCACTCTGCTTGTAGTAAACTTTTTAAAGAATTCTACGAAAAATTCCAGAAATTAAGCAAAAAGGCAATTGATCCTCTATTAGTTGGTGTATCTAGTTCAGCATCTGCTTCTGTACCTGGCATTCAGGCACCAATTAATGTCGCTGTTACTTGTGATAGAGGTGTTACTTCAGAACTGAGTAGGCTGAAGTTCGATGTTTCCGGCCTTTTGGATTCAGGCTCAGCGGTTACTATTTTAGGCAACAATGCTCATAGTGCATTAGTTAGTCGTGGGCTGGAGTTGTGTACTGATGATAAATTGACTATTGTTGCGGCTGGTGGACAAAATCTTAGAAGTATAGGCTATATTAATATGCCAGTGCATTTCGAAAACCAGTTCCACATTATTCAGAGTCACGTAGTTCCAGAAGTTCAATCATCGCTTATTTTAGGGATTGACTTTTGGCACACATTTAAAATTTGCCCGAAGTACTTGAGTTCTCTTCATTTCCCCGGCCCTCCATTGGCTAATTTAGATGTTGGTAGCCCAACCAATTTTTTGCGCTCGTATGATTATTTGGACGAATCACAAAAGGCCGTCGTTGACAATATTACCAAGCAGTTTGAAGAAATATCTTTTGAGCGCAAAGGACTTGGACGCACAAACTTAATTACTCACCACATCGACACGGGGAATTCTCCTCCTGTGAGACAGCGCTACTATAGGCTTTCACCAGAGAAACAGAGAATCCTAGTCGAGCAAGTAGACGAAATGCTCCAGCTTGATGTAGTTGAGCCTTGTGAGAGTGCCTGGCAATCCCCGGTATTGCTAGTCACTAAAAAAGATGGTCAGCCACGGTTTTGCTTAGATAGTAGGAAGCTAAAGTCTGTTACAAAACGTGACGCTTATAACTTACCTTACATATCGGAGATATTGGACAACTTGCGAGACGCGCGCTATCTTAGCAGCATTGACTTATCAAAGGCTTTCTGGCAATTACCAATAGCACTCGAAGATAGGGACAAGACGGCATTTTACGTTCCGGGACGAGGGACGTTACGGTTCAAGACTACACCGTTTGGTTTGACCAATGCGCCTTCTACGCAACAGCGGTTAGTCGATTTATTGTTTGGCAACATGGATCACAAGGCGTTCGCATATTTAGATGATGTGATAATAGTAAGTAGCACGTTTGATGAGCATGTTAGTCTTCTTCTTCGCGTGTTAGACAAACTGCGCCATGCTAATCTAACAATTAATTTAGAAAAGTGTGAATTTTTTCGAAGTAAACTTAAATATTTAGGCTATGTGGTCGACGCGAATGGTTTGCGGACTGATCCGGATAAAGTTACAGCCATTCTAAATTACCCAACTCCTACATGTCGTAAGGACTTGAAACGGTTCCTAGGCACGGCAACATGGTACCGGAGATTTGTCCCAAACTTTAGCACTATCGCAGGGCCGCTTAATAGGTTGACATCGAACAAAAAATCAACACCTCCCTTCCAGTGGACAGATGAGGCCGACACTGCGTTCAAAAAACTTAAGGAATCTTTGGTCTCTGCACCTGTTCTCTCCTGCCCAAATTACGATCTGCCTTTCGAAGTCCATACAGATGCTAGTAACTATGGGATAGGTGGTATGCTCACACAAACTATTGACGGGAAAGAGCACCCTATAGCGTATATGAGCAAGTCCTTATCGGGGGCCGAAAAGAATTATAGCATTACCGAACGTGAGACCTTAGCTGTTCTCGTGGCTCTCGAGCACTGGCGTTGCTATCTGGAGAACGGAAAGACATTTACGGTTTACACAGACCATAGCGCACTTAAGTGGTTCCTTTCCTTGAACAATCCTACGGGTAGGCTTGCACGTTGGGGAGTTCGATTATCGTCGTTTGATTTTGAAATCAAACACCGCCGCGGTGTAGACAATGTGATTCCCGACGCTTTGTCTAGAGCTGTCCCGGTCACTACTATCACTACTGCTAAATCACTCACGACTTCTAGTGATGATTGAAAGCCTTTTGAATTTAATGTAGGAGATACTGTTTATAAACGCGCTTACGTCCTGAGTGACAAAGATAAGTATTTTAGTAAGAAGTTAGCACCGAAATATATCAAGTGCAAAGTTGTCGAAAAACTCTCGCCACTTGTCTACGTTCTAGAAGACATGTCGGGTAAAAACATAGGCACTTGGCATATTAAAGACTTGAAAATATTAGGTCAACACTCATAG

Protein

MVFTIKFLSLQKTELEYEVAIRGETPGATVADLRKQISKLSQSFPSEDVLCSHLEPLDDLQAVLDLLNKVNASLESSPTDKSTLSRIENIFHHLYHRINRIVVDEVEKPHSACSKLFKEFYEKFQKLSKKAIDPLLVGVSSSASASVPGIQAPINVAVTCDRGVTSELSRLKFDVSGLLDSGSAVTILGNNAHSALVSRGLELCTDDKLTIVAAGGQNLRSIGYINMPVHFENQFHIIQSHVVPEVQSSLILGIDFWHTFKICPKYLSSLHFPGPPLANLDVGSPTNFLRSYDYLDESQKAVVDNITKQFEEISFERKGLGRTNLITHHIDTGNSPPVRQRYYRLSPEKQRILVEQVDEMLQLDVVEPCESAWQSPVLLVTKKDGQPRFCLDSRKLKSVTKRDAYNLPYISEILDNLRDARYLSSIDLSKAFWQLPIALEDRDKTAFYVPGRGTLRFKTTPFGLTNAPSTQQRLVDLLFGNMDHKAFAYLDDVIIVSSTFDEHVSLLLRVLDKLRHANLTINLEKCEFFRSKLKYLGYVVDANGLRTDPDKVTAILNYPTPTCRKDLKRFLGTATWYRRFVPNFSTIAGPLNRLTSNKKSTPPFQWTDEADTAFKKLKESLVSAPVLSCPNYDLPFEVHTDASNYGIGGMLTQTIDGKEHPIAYMSKSLSGAEKNYSITERETLAVLVALEHWRCYLENGKTFTVYTDHSALKWFLSLNNPTGRLARWGVRLSSFDFEIKHRRGVDNVIPDALSRAVPVTTITTAKSLTTSSDDXKPFEFNVGDTVYKRAYVLSDKDKYFSKKLAPKYIKCKVVEKLSPLVYVLEDMSGKNIGTWHIKDLKILGQHS

Uniprot

A0A1B6MMN8 A0A1Y1K0I6 A0A1Y1LZS5 A0A1Y1JVH7 A0A0K3CWF3 A0A1Y1MWM5 + More
A0A1Y1N3D6 A0A1W7R6D0 A0A182H681 A0A0R1E8A2 A0A146LWQ9 A0A139W930 A0A023EY81 A0A3B3IK80 W4Y9K9 A0A3B5QFT0 A0A3B1JJM2 K7JBW0 A0A3B5R366 A0A3B3BX27 K7JBV9 W4Y9K8

Pubmed

28004739 23552491 26483478 17994087 17550304 26823975 + More
18362917 19820115 25474469 17554307 23542700 25329095 20075255 29451363

EMBL

GEBQ01007184 GEBQ01002795 JAT32793.1 JAT37182.1 GEZM01099692 JAV53185.1 + More
GEZM01046053 JAV77555.1 GEZM01099479 JAV53309.1 LN877232 CTR11712.1 GEZM01018686 JAV90062.1 GEZM01018688 GEZM01018687 GEZM01018685 GEZM01018684 GEZM01018683 GEZM01018682 JAV90067.1 GEHC01000926 JAV46719.1 JXUM01028079 KQ560809 KXJ80804.1 CH892681 KRK05548.1 GDHC01007507 JAQ11122.1 KQ972733 KXZ75794.1 GBBI01004634 JAC14078.1 AAGJ04130933 AAZX01023268

Proteomes

UP000069940 UP000249989 UP000002282 UP000007266 UP000001038 UP000007110 + More
UP000002852 UP000018467 UP000002358 UP000261560

Pfam

PF17921   Integrase_H2C2        + More
PF00078   RVT_1
PF17917   RT_RNaseH
PF17919   RT_RNaseH_2
PF00665   rve
PF03732   Retrotrans_gag
PF00077   RVP
PF09668   Asp_protease
PF00628   PHD
PF02023   SCAN
PF00098   zf-CCHC

Interpro

IPR041588   Integrase_H2C2        + More
IPR036397   RNaseH_sf
IPR041373   RT_RNaseH
IPR000477   RT_dom
IPR021109   Peptidase_aspartic_dom_sf
IPR012337   RNaseH-like_sf
IPR001584   Integrase_cat-core
IPR001969   Aspartic_peptidase_AS
IPR041577   RT_RNaseH_2
IPR001995   Peptidase_A2_cat
IPR005162   Retrotrans_gag_dom
IPR018061   Retropepsins
IPR036875   Znf_CCHC_sf
IPR001878   Znf_CCHC
IPR003034   SAP_dom
IPR019103   Peptidase_aspartic_DDI1-type
IPR011011   Znf_FYVE_PHD
IPR013083   Znf_RING/FYVE/PHD
IPR001965   Znf_PHD
IPR003309   SCAN_dom
IPR019787   Znf_PHD-finger

SUPFAM

SSF53098   SSF53098        + More
SSF50630   SSF50630
SSF57756   SSF57756
SSF57903   SSF57903

Gene 3D

2.40.70.10 3.30.420.10 3.30.40.10

ProteinModelPortal

A0A1B6MMN8 A0A1Y1K0I6 A0A1Y1LZS5 A0A1Y1JVH7 A0A0K3CWF3 A0A1Y1MWM5 + More
A0A1Y1N3D6 A0A1W7R6D0 A0A182H681 A0A0R1E8A2 A0A146LWQ9 A0A139W930 A0A023EY81 A0A3B3IK80 W4Y9K9 A0A3B5QFT0 A0A3B1JJM2 K7JBW0 A0A3B5R366 A0A3B3BX27 K7JBV9 W4Y9K8

PDB

4OL8 E-value=8.56346e-71, Score=682

KEGG

102466074 no KO assigned | (RefSeq) Mir3406, bmo-mir-3406; microRNA 3406

GO

GO:0004190 GO:0003676 GO:0015074 GO:0008233 GO:0003964 GO:0008270 GO:0005634 GO:0003700 GO:0006508 GO:0000166 GO:0016788 GO:0046872 GO:0006811 GO:0006032 GO:0016021 GO:0004672 GO:0048384

Length:

847

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00143

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00006

outside

1 - 847

Pi

237.1813

Theta

145.203554

Tajima's D

2.493233

CLR

2.616135

CSRT

0.943102844857757

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree