Gene

KWMTBOMO04054

Annotation

retroelement_polyprotein_[Glyptapanteles_flavicoxis]

Location

Bomo_Chr7(+):9858081-9860857      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.527

CDS

ATGCCACATGTTAATCAAGTTCAGTGTATAAATCCAATTTTCGATAAACTGGATTGTGATCTCACAAATGAAGAAGATATCGCAAAATTACGCACCCTTCTAAACAAATATCAGCACCTGTTTATCAGAGGGTATCCAACAACTCGTGTCAAGACAGGTGAACTGGAAATCCGCCTGAAGAATCCAAACAAATATGTAGAACGAAGACCTTACAGGCTCAGTCCAATCGAACGAGAAAGGGTGCGAGCCATTGTGAAAGAGTTGATGGAGCATGGCATTATACGCGAAAGCAAGTCCCCATACTCCAGTCCCATCATCTTGGTGAAGAAGAAGAATGGTGACGATCGCATGTGCGTGGATTTCAGAGAACTTAACTCTAATACCTTACGGGACCATTACCCGCTGCCACTAATTTCAGACCAAATTGACCAATTGGCCAAGGGGCAATTCTTTACAACCTTTGACATGGCCGCAGGGTTTCACCAAATGCCTATTGCAGAATCATCAATTGAAAAGACAGCCTTTGTCACACCGGATGGGCTGTATGAATATACGACTATGCCATTTGGATTAAGTAATGCATGTTCAGTCTATCAACGATGCATCAACAGAGCTCTGAGCTCGTTAATAGGGAATGCAGCTCAAGTCTACGTCGACGACGTATTAAGCAGATGTAAAAATATCGCAGAAGGGCTGTCAAACATAGAACGTATTCTAATAGCACTACAAGATGCGGGCTTTTCCATTAATGCTGATAAATGCAGTTTTTTTAAGCGTTCAATCGAATATTTGGGTAACGTAGTATCTAATGGACAAGTCTGGCCAAGCCCACGGAAAATAGATGCTCTGGTAAAATCGCCTGTACCAACAACACCCAGACAAGTAAGACAATTTTGTGGATTGGCTGGCTACTTTAGAAAATTTATAGCAAACTTCTCACGCATAATGATACCACTATACGAGTTGACCAAATCAGGGGCTAAATGGGAGTGGGACGAGCGCCATGAGAAAGCAAGAGAGAATGTCATTCAGTGCTTAACATCAACTCCAGTACTAACACTATTCCAGGAGGAAGCACCTATTCAATTGTACACAGATGCAAGTAGTTTGGGATTCGGAGCAGTACTGGTACAAGTAATTGCGGGACGACAACATGCAGTTGCCTTTATGAGCATGAGAACTACTGAAACAGAAAGTCGCTATCACTCTTATGAATTAGAGACCTTGGCAGTAGTCCGAGCGATAAAACACTTCCGGCAGTATCTTTATGGACGTAAGTTTACAGTTATCACAGACTGTAATGCACTAAAAGCATCCAAACACAAAAAGGACTTACTCCCTAGAATCCACCGTTGGTGGGCATTTCTACAAAACTATAATTTTGAGGTTGAATACCGCAAGGGTCAACAGCTTCAACACGCAGACTACTTCAGTAGGAACCCAGTCGAACTCACAGTGAATATAATGACCAGAGATCTAGACTGGCTGAAAATTGAACAGCGACGTGATGAAACACTACGAGCTATAATGAATGGTATGAGTAATAACAATCCAAGCAACGGCTATATGCTAGAAAACAATGTCCTCAAGCGTATCGTACAAGATCCAACCTTCGGACACCGATACTGCACAGTGGTACCCAGGTCCTTTCAGTGGAGTTTAATAAACTCCTTCCACACCGCACTGAAACACCCTGGCTGGGAAAAGACGTTGCAGAAAATTAAGGACAGCCACTGGTTTGACAACATGAGCACGAAGGTACGAAAATTTGTTGACAATTGCGTGGTCTGCAGGACATCGAAAGGAGCATCTGGTGCGGTACAAGCTCAAATGCACCCGATTCAGAAACCGTCTGCTACTTTTCAAGTAATACACATGGATATAACAGGCAAGATGGGAACATCCAACGACCAACAGTATGTGATTATCACCATAGATGCTTTTACAAAATACGTGCTATTCTATTATGCAACTAACAAAAATCCACCCAGCACATTAGCTGCCCTAAAGCGTACGGTTCATCTATTCGGTACTCCTATCCAAATAATAGTAGACGGTGGAAGAGAGTTCCTCGGTGAATTCAAGACCTACTGCGATAGGGTAGGTATTGACATTCATGCTATAGCACCAGGAGTCAGCCGACCAAATGGACAAGTAGAACGCGTCGTAGCTACACTAAAAAATACTCTTACTATGATCAAGAATTATGAAACAGAAGAGTGGCACACAACGATTGCAGAACTTCAGCTAGCAATAAATTGCACTCCGCATCGTGTGACAGGCGTGGCTCCACTTACATTACTCACTCAGCGAAAGCATTGTGTTCCTCCAGAGCTACTCAATTTAGTAAATATTGACGAGCAGACTATTGATATTGAAGCACTCACTAACCATGTTCAACACAAGATGTCACAAAATGCAGAACAGGACAGGCAACGTTTCAATTCAAAAAAAGCCAGGATCCATCATTTCCAGCGTGGTGATTATGTGCTCATAAAAAATAATCCTCGTAATCAAACTTCGTTGGATCTCAAATTCAGCGAGCCATATGAGATAACAAGAATCCTGGACAACAACCGCTATTTAGTAAAAAAGGTGGTTGGTTCAGGGCGTTCAAGAAAAGTAGCTCATCATCAACTGCGTCGGGCACCGCAACCTGGAGACCAGATAGCCGTATCGGCGGAAGAAGACGACCCTCCAGCATCAGCCGATGAACCTATATGA

Protein

MPHVNQVQCINPIFDKLDCDLTNEEDIAKLRTLLNKYQHLFIRGYPTTRVKTGELEIRLKNPNKYVERRPYRLSPIERERVRAIVKELMEHGIIRESKSPYSSPIILVKKKNGDDRMCVDFRELNSNTLRDHYPLPLISDQIDQLAKGQFFTTFDMAAGFHQMPIAESSIEKTAFVTPDGLYEYTTMPFGLSNACSVYQRCINRALSSLIGNAAQVYVDDVLSRCKNIAEGLSNIERILIALQDAGFSINADKCSFFKRSIEYLGNVVSNGQVWPSPRKIDALVKSPVPTTPRQVRQFCGLAGYFRKFIANFSRIMIPLYELTKSGAKWEWDERHEKARENVIQCLTSTPVLTLFQEEAPIQLYTDASSLGFGAVLVQVIAGRQHAVAFMSMRTTETESRYHSYELETLAVVRAIKHFRQYLYGRKFTVITDCNALKASKHKKDLLPRIHRWWAFLQNYNFEVEYRKGQQLQHADYFSRNPVELTVNIMTRDLDWLKIEQRRDETLRAIMNGMSNNNPSNGYMLENNVLKRIVQDPTFGHRYCTVVPRSFQWSLINSFHTALKHPGWEKTLQKIKDSHWFDNMSTKVRKFVDNCVVCRTSKGASGAVQAQMHPIQKPSATFQVIHMDITGKMGTSNDQQYVIITIDAFTKYVLFYYATNKNPPSTLAALKRTVHLFGTPIQIIVDGGREFLGEFKTYCDRVGIDIHAIAPGVSRPNGQVERVVATLKNTLTMIKNYETEEWHTTIAELQLAINCTPHRVTGVAPLTLLTQRKHCVPPELLNLVNIDEQTIDIEALTNHVQHKMSQNAEQDRQRFNSKKARIHHFQRGDYVLIKNNPRNQTSLDLKFSEPYEITRILDNNRYLVKKVVGSGRSRKVAHHQLRRAPQPGDQIAVSAEEDDPPASADEPI

Uniprot

B7S8P8   A0A0A9Z954   A0A0A9WJJ8   A0A146KXF1   A0A146M2J2   A0A0A9X1Z8   + More
A0A146LDG4   A0A0A9YM49   A0A0A9YEP8   Q24310   D2A5M1   A0A0A9X5S1   A0A0C9RXL6   A0A0J7KEC9   A0A1Y1NG42   A0A1Y1NAV9   A0A139WJA1   A0A139WIQ0   A0A194R1L3   A0A147BLC5   A0A3S2L135   A0A1Y1KFN9   A0A1Y1KFM9   A0A139WIB9   X1X5H2   A0A0A9XL77   A0A0A9YZ15   A0A2S2P032   A0A0A9ZDJ9   X1WPP0   A0A1Y1MFA9   A0A0J7K9X8   A0A0J7NF11   A0A1Y1NEJ5   A0A023EZG2   A0A023EYH9   A0A0J7KLK4   A0A0J7K890   X1XM84   A0A2S2QIS3   A0A139WCC5   A0A139WCG2   A0A2L2Y402   A0A2L2Y1I8   A0A2L2Y1Z9   A0A023EY26   A0A2S2PFS2   J9JJ45   J9LBS9   A0A2H8TRV6   A0A1Y1MFE0   A0A1W7R6L8   A0A2S2NFQ4   A0A0A1XB16   A0A2S2NKJ2   J9JZ77   A0A1W7R6G2   A0A034WRX5   T1PMR9   X1XU22   A0A224XHR1   A0A1Y1LN89   A0A034VAM6   X1XD76   A0A2A4J7U9   A0A034VKV9   X1XU14   Q94885   A0A1W7R6H1   A0A2S2PGQ9   W8APB2   A0A164P0I2   A0A034VPR8   A0A0A1WKC8   A0A2M3Z5R3   W8B0V9   W8C8Q1   A0A023EYF0   X1X261   A0A2S2QVZ0   J9JQ65   A0A2S2PD17   A0A023F013   A0A2S2N9B2   A0A1W7R6G1   A0A034W795   A0A2M4CKM2  

Pubmed

25401762    26823975    2464689    18362917    19820115    28004739    + More
26354079    29652888    25474469    26561354    25830018    25348373    3007285    8535278    24495485   

EMBL

EF710649    ACE75273.1    GBHO01040010    GBHO01001812    JAG03594.1    JAG41792.1    + More
GBHO01036023    GBHO01032007    JAG07581.1    JAG11597.1    GDHC01018907    JAP99721.1    GDHC01004980    JAQ13649.1    GBHO01030786    JAG12818.1    GDHC01012341    JAQ06288.1    GBHO01011083    GBHO01009497    JAG32521.1    JAG34107.1    GBHO01015604    JAG28000.1    X14037    CAA32198.1    KQ971345    EFA05054.2    GBHO01031154    JAG12450.1    GBYB01013920    JAG83687.1    LBMM01008871    KMQ88569.1    GEZM01007614    GEZM01007613    GEZM01007612    JAV95056.1    GEZM01007616    GEZM01007615    GEZM01007611    JAV95051.1    KQ971338    KYB27887.1    KYB27888.1    KQ460883    KPJ11409.1    GEGO01004299    JAR91105.1    RSAL01000274    RVE43148.1    GEZM01089268    GEZM01089261    JAV57577.1    GEZM01089269    GEZM01089265    JAV57567.1    KQ971339    KYB27733.1    ABLF02004401    ABLF02013544    ABLF02013550    GBHO01043544    GBHO01031946    GBHO01031931    GBHO01022910    GBHO01022909    GBHO01015498    GBHO01001135    GBHO01001106    JAG00060.1    JAG11658.1    JAG11673.1    JAG20694.1    JAG20695.1    JAG28106.1    JAG42469.1    JAG42498.1    GBHO01022918    GBHO01006165    GBHO01006163    GBHO01001110    JAG20686.1    JAG37439.1    JAG37441.1    JAG42494.1    GGMR01009949    MBY22568.1    GBHO01041008    GBHO01006162    GBHO01001134    GBHO01001105    JAG02596.1    JAG37442.1    JAG42470.1    JAG42499.1    ABLF02033943    ABLF02042737    GEZM01033083    JAV84424.1    LBMM01010976    KMQ87102.1    LBMM01005919    KMQ91095.1    GEZM01005427    JAV96179.1    GBBI01004551    JAC14161.1    GBBI01004550    JAC14162.1    KMQ91096.1    LBMM01011782    KMQ86633.1    ABLF02004526    ABLF02054969    GGMS01008442    MBY77645.1    KQ971370    KYB25609.1    KYB25610.1    IAAA01004057    LAA02040.1    IAAA01004058    LAA02042.1    IAAA01004056    LAA02037.1    GBBI01004477    JAC14235.1    GGMR01015682    MBY28301.1    ABLF02008401    ABLF02008404    ABLF02041876    GFXV01005120    MBW16925.1    GEZM01034557    JAV83728.1    GEHC01000930    JAV46715.1    GGMR01003388    MBY16007.1    GBXI01005773    JAD08519.1    GGMR01005091    MBY17710.1    ABLF02014660    ABLF02042774    GEHC01000888    JAV46757.1    GAKP01001563    JAC57389.1    KA649989    AFP64618.1    ABLF02017401    GFTR01008753    JAW07673.1    GEZM01051217    GEZM01051215    JAV75083.1    GAKP01019383    JAC39569.1    ABLF02022032    NWSH01002797    PCG67520.1    GAKP01016235    JAC42717.1    ABLF02003120    ABLF02004015    ABLF02057179    ABLF02066208    X95908    CAA65152.1    GEHC01000876    JAV46769.1    GGMR01016004    MBY28623.1    GAMC01020207    JAB86348.1    LRGB01002748    KZS06406.1    GAKP01014483    JAC44469.1    GBXI01015151    JAC99140.1    GGFM01003105    MBW23856.1    GAMC01015907    JAB90648.1    GAMC01007326    JAB99229.1    GBBI01004549    JAC14163.1    ABLF02005127    ABLF02005129    ABLF02007401    GGMS01012726    MBY81929.1    ABLF02005846    GGMR01014665    MBY27284.1    GBBI01004613    JAC14099.1    GGMR01000717    MBY13336.1    GEHC01000891    JAV46754.1    GAKP01008942    JAC50010.1    GGFL01001689    MBW65867.1   

Proteomes

UP000007266    UP000036403    UP000053240    UP000283053    UP000007819    UP000218220    + More
UP000076858   

PRIDE

Q24310    Q94885   

Pfam

PF17919   RT_RNaseH_2        + More
PF17921   Integrase_H2C2
PF00665   rve
PF00098   zf-CCHC
PF00078   RVT_1
PF17917   RT_RNaseH
PF00077   RVP
PF14392   zf-CCHC_4
PF03732   Retrotrans_gag
PF02037   SAP
PF07530   PRE_C2HC
PF03273   Baculo_gp64
PF13873   Myb_DNA-bind_5
PF09668   Asp_protease
PF12384   Peptidase_A2B
PF16064   DUF4806

Interpro

IPR041577   RT_RNaseH_2        + More
IPR001584   Integrase_cat-core       
IPR036875   Znf_CCHC_sf       
IPR012337   RNaseH-like_sf       
IPR001878   Znf_CCHC       
IPR021109   Peptidase_aspartic_dom_sf       
IPR000477   RT_dom       
IPR036397   RNaseH_sf       
IPR041588   Integrase_H2C2       
IPR041373   RT_RNaseH       
IPR001969   Aspartic_peptidase_AS       
IPR001995   Peptidase_A2_cat       
IPR018061   Retropepsins       
IPR034122   Retropepsin-like_bacterial       
IPR025836   Zn_knuckle_CX2CX4HX4C       
IPR005162   Retrotrans_gag_dom       
IPR036361   SAP_dom_sf       
IPR003034   SAP_dom       
IPR004955   Baculovirus_Gp64       
IPR006579   Pre_C2HC_dom       
IPR028002   Myb_DNA-bind_5       
IPR019103   Peptidase_aspartic_DDI1-type       
IPR024650   Peptidase_A2B       
IPR032071   DUF4806       

SUPFAM

SSF53098   SSF53098        + More
SSF57756   SSF57756       
SSF50630   SSF50630       
SSF68906   SSF68906       

Gene 3D

2.40.70.10     3.30.420.10     1.10.720.30    

CDD

cd05483  retropepsin_like_bacteria

ProteinModelPortal

B7S8P8   A0A0A9Z954   A0A0A9WJJ8   A0A146KXF1   A0A146M2J2   A0A0A9X1Z8   + More
A0A146LDG4   A0A0A9YM49   A0A0A9YEP8   Q24310   D2A5M1   A0A0A9X5S1   A0A0C9RXL6   A0A0J7KEC9   A0A1Y1NG42   A0A1Y1NAV9   A0A139WJA1   A0A139WIQ0   A0A194R1L3   A0A147BLC5   A0A3S2L135   A0A1Y1KFN9   A0A1Y1KFM9   A0A139WIB9   X1X5H2   A0A0A9XL77   A0A0A9YZ15   A0A2S2P032   A0A0A9ZDJ9   X1WPP0   A0A1Y1MFA9   A0A0J7K9X8   A0A0J7NF11   A0A1Y1NEJ5   A0A023EZG2   A0A023EYH9   A0A0J7KLK4   A0A0J7K890   X1XM84   A0A2S2QIS3   A0A139WCC5   A0A139WCG2   A0A2L2Y402   A0A2L2Y1I8   A0A2L2Y1Z9   A0A023EY26   A0A2S2PFS2   J9JJ45   J9LBS9   A0A2H8TRV6   A0A1Y1MFE0   A0A1W7R6L8   A0A2S2NFQ4   A0A0A1XB16   A0A2S2NKJ2   J9JZ77   A0A1W7R6G2   A0A034WRX5   T1PMR9   X1XU22   A0A224XHR1   A0A1Y1LN89   A0A034VAM6   X1XD76   A0A2A4J7U9   A0A034VKV9   X1XU14   Q94885   A0A1W7R6H1   A0A2S2PGQ9   W8APB2   A0A164P0I2   A0A034VPR8   A0A0A1WKC8   A0A2M3Z5R3   W8B0V9   W8C8Q1   A0A023EYF0   X1X261   A0A2S2QVZ0   J9JQ65   A0A2S2PD17   A0A023F013   A0A2S2N9B2   A0A1W7R6G1   A0A034W795   A0A2M4CKM2  

PDB

4OL8     E-value=2.54414e-69,     Score=669

KEGG

NA   

GO

GO:0003676   GO:0008270   GO:0015074   GO:0004190   GO:0008233   GO:0003964   GO:0005634   GO:0019048   GO:0000166   GO:0016788   GO:0046872   GO:0006811   GO:0006032   GO:0016021   GO:0004672   GO:0048384  

Length:

907

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01823

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00034

outside

1  -  907

 

 

Pi

377.617507

Theta

220.41816

Tajima's D

3.478683

CLR

28.534411

CSRT

0.993150342482876

Interpretation

Uncertain