Gene

KWMTBOMO04043

Pre Gene Modal

BGIBMGA010283

Annotation

septin_and_tuftelin_interacting_protein_[Bombyx_mori]

Location

Bomo_Chr7(+):9644491-9645615      View in EpiBrowser

Full name

Septin-interacting protein 1      

Alternative Name

Septin and tuftelin-interacting protein 1

Location in the cell

Cytoplasmic   Reliability : 1.744 Nuclear   Reliability : 2.224

CDS

ATGTTTCCCGAAGACATACTCAAGGAGCCGGCGGTCCGCGACGCTTTCCGGAAAGCCCTCGACATGATGAACCGTAGCGCCGATATCGACACCATAGATCCGCCTCCTCCGCCAAGGTTCACCGTCATCACGGAGACCAAAGAAACGCCTAGAATTGTCGATGTATTAGCTTCGGCAACGCAACAGAAGAGTTTCTCCGAGTTGTTGGAGACCAGGTGCATTGAAAACGGTATAACTTTTGTACCGATTGCAGGGAAAACGAGGGAAGGTCGCCCCCTATATAAAATAGGTGCGCTACAGTGCTACGTTATAAGGAACGTGATAATGTATTCCGACGATAACGGAAGGAATTTTGCGCCAATCGCCATCGATAAGTTGCTCAAATTGGTCGAGGATTAG

Protein

MFPEDILKEPAVRDAFRKALDMMNRSADIDTIDPPPPPRFTVITETKETPRIVDVLASATQQKSFSELLETRCIENGITFVPIAGKTREGRPLYKIGALQCYVIRNVIMYSDDNGRNFAPIAIDKLLKLVED

Description

May be involved in pre-mRNA splicing.

Subunit

Identified in the spliceosome C complex (By similarity). Interacts with pnut.

Similarity

Belongs to the TFP11/STIP family.

Keywords

Coiled coil   Complete proteome   mRNA processing   mRNA splicing   Nucleus   Phosphoprotein   Reference proteome   Spliceosome  

Feature

chain  Septin-interacting protein 1

Uniprot

A1XDB3   H9JL82   A0A2W1AYN3   A0A3S2NTK0   A0A2W1BUW5   A0A2A4K201   + More
A0A212FCY7   A0A1E1W018   A0A2H1WJM9   A0A194RKK6   A0A0L7LDN3   A0A194PZH2   W8BBQ4   A0A0K8VF45   A0A034WBN6   V5IAZ3   A0A336M495   N6SSW4   A0A1B6CZ51   B3MML6   A0A182GJF2   B4JC62   B4KGZ0   Q29KP1   A1XDA9   A0A1A9USN8   A0A1B0G097   B4MV34   U4U4Z9   A0A3B0JVD0   A0A0L0BWZ6   A0A1B0A3T9   A0A1B6CJS3   A0A1B6D3D3   Q16YS1   A1XDB4   A0A1S4G738   A0A1A9X057   B4LRI9   A0A1W4WLB1   A0A182PIZ5   A0A1Y1LAG3   E2ABM3   A0A2P8ZGS9   A0A182VTE4   A1XDB2   R7UZW4   A0A1Y1LHY9   A0A1I8MKJ6   A0A182KWD4   E2BJK8   A0A182IBE0   A0A0M9AA34   A0A023F277   A0A0M4E004   W5JQZ1   A0A0M4E4I9   X2J8R0   Q9Y103   A0A1Y1LAF4   A0A182X6B7   A1XDA8   A0A182Q9K9   A0A182F3B0   A0A1W4V391   A0A182JXN2   B3N567   A0A1Y1LAH8   A0A182LTI5   A0A232F2X2   A0A1B0GIT1   A0A182NAK3   A0A0J9QWB0   A0A182TUL0   B4Q417   E9J498   K7J8F2   A1XDB1   A0A084VME3   A0A067R831   A0A182VK21   A1XDB5   A0A1B6MTJ4   A0A151J015   F4WE40   A0A195BBD2   A0A158NUU0   A0A151K073   A0A182R3Y2   A0A1B0D5Y9   A0A1B6GBT5   A0A1B6GK58   A0A1B6GH69   A0A1B6IUK7   A0A0C9QGZ0   T1IB51   A0A1I8PX56   A0A182SHH9   A0A183IW63   A0A1J1I0P0  

Pubmed

17289020    19121390    28756777    22118469    26354079    26227816    + More
24495485    25348373    23537049    17994087    26483478    15632085    23185243    26108605    17510324    28004739    20798317    29403074    17550304    23254933    25315136    20966253    25474469    20920257    23761445    10731132    12537568    12537572    12537573    12537574    16110336    17569856    17569867    11884525    12537569    18327897    28648823    22936249    21282665    20075255    24438588    24845553    12364791    21719571    21347285   

EMBL

DQ342046    ABC69938.1    BABH01011772    BABH01011773    KZ150716    PZC70362.1    + More
RSAL01000210    RVE44210.1    KZ149930    PZC77424.1    NWSH01000282    PCG77793.1    AGBW02009118    OWR51615.1    GDQN01010727    JAT80327.1    ODYU01009050    SOQ53176.1    KQ460075    KPJ17954.1    JTDY01001543    KOB73587.1    KQ459582    KPI98721.1    GAMC01007895    JAB98660.1    GDHF01014831    JAI37483.1    GAKP01005951    JAC53001.1    GALX01000335    JAB68131.1    UFQS01000144    UFQT01000144    SSX00438.1    SSX20818.1    APGK01057945    KB741283    ENN70774.1    GEDC01018745    JAS18553.1    CH902620    EDV31907.1    JXUM01012806    KQ560362    KXJ82820.1    CH916368    EDW03075.1    CH933807    EDW12201.1    DQ342043    CH379061    ABC69935.1    EAL33133.2    DQ342042    CH479189    ABC69934.1    EDW25521.1    CCAG010018487    CH963857    EDW76379.2    KB631738    ERL85681.1    OUUW01000010    SPP86034.1    JRES01001211    KNC24562.1    GEDC01023562    JAS13736.1    GEDC01017110    JAS20188.1    CH477510    EAT39778.1    DQ342047    ABC69939.1    CH940649    EDW63584.1    GEZM01061222    GEZM01061220    GEZM01061219    GEZM01061218    GEZM01061216    GEZM01061215    JAV70642.1    GL438317    EFN69166.1    PYGN01000062    PSN55670.1    DQ342045    CM000157    ABC69937.1    EDW88899.1    AMQN01005636    KB296425    ELU11797.1    GEZM01061225    GEZM01061221    GEZM01061214    JAV70637.1    GL448571    EFN84165.1    APCN01000672    KQ435704    KOX80307.1    GBBI01003521    JAC15191.1    CP012523    ALC38304.1    ADMH02000364    ETN66817.1    ALC38796.1    AE014134    AHN54151.1    AF221101    AF145670    GEZM01061224    GEZM01061217    JAV70632.1    DQ342041    ABC69933.1    AXCN02002191    CH954177    EDV57897.1    GEZM01061223    JAV70633.1    AXCM01004755    NNAY01001130    OXU25035.1    AJWK01015376    CM002910    KMY88357.1    CM000361    EDX03850.1    GL768088    EFZ12353.1    DQ342044    CH480820    ABC69936.1    EDW54403.1    ATLV01014586    KE524975    KFB39137.1    KK852872    KDR14564.1    AAAB01008944    DQ342048    HACL01000127    ABC69940.1    CFW94421.1    GEBQ01000762    JAT39215.1    KQ980670    KYN14624.1    GL888102    EGI67478.1    KQ976532    KYM81525.1    ADTU01026715    KQ981296    KYN43118.1    AJVK01003470    GECZ01009861    JAS59908.1    GECZ01006933    JAS62836.1    GECZ01008655    GECZ01008002    JAS61114.1    JAS61767.1    GECU01017098    JAS90608.1    GBYB01002744    JAG72511.1    ACPB03007249    UZAM01011012    VDP14527.1    CVRI01000038    CRK93763.1   

Proteomes

UP000005204    UP000283053    UP000218220    UP000007151    UP000053240    UP000037510    + More
UP000053268    UP000019118    UP000007801    UP000069940    UP000249989    UP000001070    UP000009192    UP000001819    UP000008744    UP000078200    UP000092444    UP000007798    UP000030742    UP000268350    UP000037069    UP000092445    UP000008820    UP000091820    UP000008792    UP000192223    UP000075885    UP000000311    UP000245037    UP000075920    UP000002282    UP000014760    UP000095301    UP000075882    UP000008237    UP000075840    UP000053105    UP000092553    UP000000673    UP000000803    UP000076407    UP000005203    UP000075886    UP000069272    UP000192221    UP000075881    UP000008711    UP000075883    UP000215335    UP000092461    UP000075884    UP000075902    UP000000304    UP000002358    UP000001292    UP000030765    UP000027135    UP000075903    UP000078492    UP000007755    UP000078540    UP000005205    UP000078541    UP000075900    UP000092462    UP000015103    UP000095300    UP000075901    UP000050793    UP000183832   

PRIDE

A1XDB3    H9JL82    X2J8R0    Q9Y103   

Pfam

PF01585   G-patch        + More
PF07842   GCFC
PF12457   TIP_N

Interpro

IPR024933   STIP        + More
IPR000467   G_patch_dom       
IPR022159   STIP/TFIP11_N       
IPR022783   GCFC_dom       
IPR029052   Metallo-depent_PP-like       

Gene 3D

3.60.21.10    

ProteinModelPortal

A1XDB3   H9JL82   A0A2W1AYN3   A0A3S2NTK0   A0A2W1BUW5   A0A2A4K201   + More
A0A212FCY7   A0A1E1W018   A0A2H1WJM9   A0A194RKK6   A0A0L7LDN3   A0A194PZH2   W8BBQ4   A0A0K8VF45   A0A034WBN6   V5IAZ3   A0A336M495   N6SSW4   A0A1B6CZ51   B3MML6   A0A182GJF2   B4JC62   B4KGZ0   Q29KP1   A1XDA9   A0A1A9USN8   A0A1B0G097   B4MV34   U4U4Z9   A0A3B0JVD0   A0A0L0BWZ6   A0A1B0A3T9   A0A1B6CJS3   A0A1B6D3D3   Q16YS1   A1XDB4   A0A1S4G738   A0A1A9X057   B4LRI9   A0A1W4WLB1   A0A182PIZ5   A0A1Y1LAG3   E2ABM3   A0A2P8ZGS9   A0A182VTE4   A1XDB2   R7UZW4   A0A1Y1LHY9   A0A1I8MKJ6   A0A182KWD4   E2BJK8   A0A182IBE0   A0A0M9AA34   A0A023F277   A0A0M4E004   W5JQZ1   A0A0M4E4I9   X2J8R0   Q9Y103   A0A1Y1LAF4   A0A182X6B7   A1XDA8   A0A182Q9K9   A0A182F3B0   A0A1W4V391   A0A182JXN2   B3N567   A0A1Y1LAH8   A0A182LTI5   A0A232F2X2   A0A1B0GIT1   A0A182NAK3   A0A0J9QWB0   A0A182TUL0   B4Q417   E9J498   K7J8F2   A1XDB1   A0A084VME3   A0A067R831   A0A182VK21   A1XDB5   A0A1B6MTJ4   A0A151J015   F4WE40   A0A195BBD2   A0A158NUU0   A0A151K073   A0A182R3Y2   A0A1B0D5Y9   A0A1B6GBT5   A0A1B6GK58   A0A1B6GH69   A0A1B6IUK7   A0A0C9QGZ0   T1IB51   A0A1I8PX56   A0A182SHH9   A0A183IW63   A0A1J1I0P0  

KEGG

100037443    K13103 tuftelin-interacting protein 11 | (RefSeq) STIP; septin and tuftelin interacting protein

GO

GO:0005681   GO:0008380   GO:0006397   GO:0003676   GO:0016021   GO:0016787   GO:0000398   GO:0071011   GO:0005737   GO:0071013  

Subcellular location

Nucleus  

Length:

132

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00626

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03327

outside

1  -  132

 

 

Pi

340.950513

Theta

157.734524

Tajima's D

3.039931

CLR

0.396572

CSRT

0.980150992450378

Interpretation

Uncertain