SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04036
Annotation
reverse_transcriptase_[Danaus_plexippus]
Location in the cell
Mitochondrial   Reliability : 1.021 PlasmaMembrane   Reliability : 1.035
 

Sequence

CDS
ATGGTCGAATTTCCTCCGCCCCCGTCTAACATGGACGAGGGGTGGAATGTGGTGGCCCGACGGGGTGCCAAGAGGGCCGTACCGACAGCTCCCCAAGTGGGTGGAGCACCGGCCACCGCGGCGTCTCAGGCTGCTCCCCAACAGGGTCGAGCGCCTGTGGCCGCCAAGAAAAAGAAGACGAAGAAGAAGTCGTCGCGCGCGCCGCGGTCGGCGGCAGTGGTCTTAACGTGGCTGCCGGCCGCCGAGGCCAAGGGCATGTCATACGGAGATGTAGTCTCCCGGGCGCGCGCGGCTATTGATCTGGACGAGATCGGGGCGGGGGAGGGCCTCCGTTGTAGGCTGACGGCCAATGGGGCCAAGCTACTAGAGTGTCCCGGTGCCGATAGTTCCGGCATCGCGGAGCGTCTGGCGGCGAAGCTCCGTACGGTTCTGCCTGAGGAGGAAGTTCGAGTGCACAGGCCGGTCAAAATGGCTGAATTGAGAGTGACCGGCCTGGACGACTGCACCACTAAGGATGAGGTGGCGGCGGCTATTGCCGCCCGGGGCAACTGCGCCCTGGAGAATATAACTGTAGGCGAGCTGCGCCTCGGTTATACCGGGGCTGGCTCTGTTTGGGTGCGTTGCCCGGTAGAGGCGGCCACCTCCTTGGCTGCTCCTCCGCTCGGGAGACCGTCAGGGGAACCGGGCAGGTTGCGCGTGGGCTGGATAGCGGCCCGCGTGCGCCTTCTTGAACCACGCGCCTGGTGGTGCCTCAGATGCTCCAGCACTGGGCACTGCCTCGCTAAATGCGTGAGTGCGGTTGACCGCAGCGGATTGTGCTTTCGCTGTGGTCAGCCTGGACACAAGGCGGCCGTGTGCTCGGCTGCGCCGCATTGCTTATTATGTGCGGCGGCCGGGCGCGAGGCTGACCACCGGGCCGGGGGCAAGGCCTGCCCTCCGGCCAGCAAGAACGCAGAACGAAATCGGCGCCGCCAAGCTAAGCGGCGTCAAAAGAAGCGGTTGGCCGGAGGAGCACCGGCCGGCACTTTGTCCCCCGCTGAGGCGTTCGCGCCCGATAGCGGGGGCAATGGAGTAGGGGAGGGAGCGATGGATGACATGTTGCTCCAGACCATGGCGGAGTGGTCAATTGACGTGGCTGTGGTCGCCGAGCCATACTTCGTTCCCCCAGCGGATGACTGTTGGTTTGGGGACGTTGATGGCGTGGCGGCCATACATATCAGAAGATCCGCGATGGTCCCCCCCCCCCTGGCGATGGTGACCAGGGGCCCCGGGATCGTCGCGGTACAGTTAGAAAATATCGTCGGGATCGGGGTGTACTTTTCTCCGAATCGGCCTACCATCGGGTTCGGGCGGTTCCTGGACGGGCTAGAGGTGATCGCTCGTCACCTCGCTCCCTGTTCAGTGATACTGGCGGGGGACTTCAATGCGAAGTGTGTCGCTTGGGGTTCCCCATTCACGGACGCTCGTGGTAGGCTGCTGGAGGAGTGGGCGGTCACGGTCGGTCTCTGTATCGTTAACAGGGGCTCGACCGCGACCTGCGTGCGGTGGACGGGCGAGTCTATCGTGGACTTGACGTTCGCGAGCTCGCCCGTCGCACGGCGCATCCTCGGCTGGAGAGTGGTGGTGGGGGCGGAATCGTTGTTCGATCACCGGTATATCCGGTACGATCTTTCTGCCCCCGCGCCGACGCGGGCTGCAGGTGCCCGCGGGGTTGACCCCCCGCAGAGTGCATCCCGGTCATTCCCTAAGTGGGCACTGAAGCTCCTGAACAGGGAGCTCCTGGTGGAGGCCTCTATGGTGGCGGCATGGGTGCCCACGCGCCCACAACCTTTCGATGTGGAAACCGAGGCCGAATGGTTCCGGGGCGCAATGCACCGCATATGTGATGCTTCGATGCCCCGGGTCGGCCCTCGGCATTCTGGACGGCGACAGTCGCCCTGGTGGTCGCCCGAAATTGCAAGACTGCGTGCGGTATCCATTCGAGCGAGCCGCCAGTGCACTAGACACCGCCGTCGCCGCCGCCTGCGGCGCGACGAGCCCGTCGCGTTCGCGGAGGAGGAAACTCGGCTGCACCGCGAATATCGCGCTGTGAAGGACGCCCTGCGGCTGGCCATCAGGCGGGCCAAGGAGCAGAACATGGAGAGACTCTTGGAGGCGCTCGAAGTGGATCCGTGGGGGAGCCCATACAAATTGGTACGCGGCAAGTTACGCCCGTGGGCCTCCTCTATGACTGAGCGTCTCCAGCCTCAGCAGCTGCGGGACATCGTTTCGGCGTTGTTCCCGCAGGAGCGGGCGGGTTTTGTCCCTCCCGCTATGGGCGGGCCGTCTGACACCGTCGACGGCCAAGCTCCTGCTGAGGTGCCCCGTATTACCGAGGCAGAGCTCCGGGTGGCCGTTGTCAAGATGACTGCAAAAGACACGGCCCCCGGCCCGGACGGAGTCCACGGCCGGGTATTGGCCTTGGCCCTCGGTGCCCTGGGGGACCGGCTCCTTGAGCTATATAATGGCTGCTTGGAGTCGGGACGGTTTCCGTCGCTCTGGCGGACGGGTAGACTTGTGTTGTTGAGGAAGGAGGGGCGCCCGGTGGATACAGCCGCCTGTCCTATCGTACTACTGGACGAGGCGGGAAAATTGCTGGAACGTATTCTGGCTGCCCGCATCGTTCGGCACCTGGTCGGGGTGGGGCCTGACCTGTCGGCGGAGCAGTACGGCTTCCGGCCGTTCGACCGTGGATGCAATTCTTCGCGTGCGGTCCCTCTCGGACGAGGCCGTTCCTCGGGGTGGGGTGGCGCTGGCGGTGTCTCTTGA
Protein
MVEFPPPPSNMDEGWNVVARRGAKRAVPTAPQVGGAPATAASQAAPQQGRAPVAAKKKKTKKKSSRAPRSAAVVLTWLPAAEAKGMSYGDVVSRARAAIDLDEIGAGEGLRCRLTANGAKLLECPGADSSGIAERLAAKLRTVLPEEEVRVHRPVKMAELRVTGLDDCTTKDEVAAAIAARGNCALENITVGELRLGYTGAGSVWVRCPVEAATSLAAPPLGRPSGEPGRLRVGWIAARVRLLEPRAWWCLRCSSTGHCLAKCVSAVDRSGLCFRCGQPGHKAAVCSAAPHCLLCAAAGREADHRAGGKACPPASKNAERNRRRQAKRRQKKRLAGGAPAGTLSPAEAFAPDSGGNGVGEGAMDDMLLQTMAEWSIDVAVVAEPYFVPPADDCWFGDVDGVAAIHIRRSAMVPPPLAMVTRGPGIVAVQLENIVGIGVYFSPNRPTIGFGRFLDGLEVIARHLAPCSVILAGDFNAKCVAWGSPFTDARGRLLEEWAVTVGLCIVNRGSTATCVRWTGESIVDLTFASSPVARRILGWRVVVGAESLFDHRYIRYDLSAPAPTRAAGARGVDPPQSASRSFPKWALKLLNRELLVEASMVAAWVPTRPQPFDVETEAEWFRGAMHRICDASMPRVGPRHSGRRQSPWWSPEIARLRAVSIRASRQCTRHRRRRRLRRDEPVAFAEEETRLHREYRAVKDALRLAIRRAKEQNMERLLEALEVDPWGSPYKLVRGKLRPWASSMTERLQPQQLRDIVSALFPQERAGFVPPAMGGPSDTVDGQAPAEVPRITEAELRVAVVKMTAKDTAPGPDGVHGRVLALALGALGDRLLELYNGCLESGRFPSLWRTGRLVLLRKEGRPVDTAACPIVLLDEAGKLLERILAARIVRHLVGVGPDLSAEQYGFRPFDRGCNSSRAVPLGRGRSSGWGGAGGVS

Summary

Pfam
PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00098   zf-CCHC
Interpro
IPR001878   Znf_CCHC        + More
IPR000477   RT_dom       
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR036875   Znf_CCHC_sf       
SUPFAM
SSF56219   SSF56219        + More
SSF57756   SSF57756       
Gene 3D
PDB
1WDU     E-value=2.30739e-08,     Score=144

Ontologies

Topology

Length:
935
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00364000000000001
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00013
outside
1  -  935
 
 

Population Genetic Test Statistics

Pi
122.755758
Theta
19.869037
Tajima's D
1.192662
CLR
0.332067
CSRT
0.72406379681016
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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