Silkworm Genome Informatics Database

Gene

KWMTBOMO04036

Annotation

reverse_transcriptase_[Danaus_plexippus]

Location

Bomo_Chr7(-):9566892-9570010 View in EpiBrowser

Location in the cell

Mitochondrial Reliability : 1.021 PlasmaMembrane Reliability : 1.035

CDS

ATGGTCGAATTTCCTCCGCCCCCGTCTAACATGGACGAGGGGTGGAATGTGGTGGCCCGACGGGGTGCCAAGAGGGCCGTACCGACAGCTCCCCAAGTGGGTGGAGCACCGGCCACCGCGGCGTCTCAGGCTGCTCCCCAACAGGGTCGAGCGCCTGTGGCCGCCAAGAAAAAGAAGACGAAGAAGAAGTCGTCGCGCGCGCCGCGGTCGGCGGCAGTGGTCTTAACGTGGCTGCCGGCCGCCGAGGCCAAGGGCATGTCATACGGAGATGTAGTCTCCCGGGCGCGCGCGGCTATTGATCTGGACGAGATCGGGGCGGGGGAGGGCCTCCGTTGTAGGCTGACGGCCAATGGGGCCAAGCTACTAGAGTGTCCCGGTGCCGATAGTTCCGGCATCGCGGAGCGTCTGGCGGCGAAGCTCCGTACGGTTCTGCCTGAGGAGGAAGTTCGAGTGCACAGGCCGGTCAAAATGGCTGAATTGAGAGTGACCGGCCTGGACGACTGCACCACTAAGGATGAGGTGGCGGCGGCTATTGCCGCCCGGGGCAACTGCGCCCTGGAGAATATAACTGTAGGCGAGCTGCGCCTCGGTTATACCGGGGCTGGCTCTGTTTGGGTGCGTTGCCCGGTAGAGGCGGCCACCTCCTTGGCTGCTCCTCCGCTCGGGAGACCGTCAGGGGAACCGGGCAGGTTGCGCGTGGGCTGGATAGCGGCCCGCGTGCGCCTTCTTGAACCACGCGCCTGGTGGTGCCTCAGATGCTCCAGCACTGGGCACTGCCTCGCTAAATGCGTGAGTGCGGTTGACCGCAGCGGATTGTGCTTTCGCTGTGGTCAGCCTGGACACAAGGCGGCCGTGTGCTCGGCTGCGCCGCATTGCTTATTATGTGCGGCGGCCGGGCGCGAGGCTGACCACCGGGCCGGGGGCAAGGCCTGCCCTCCGGCCAGCAAGAACGCAGAACGAAATCGGCGCCGCCAAGCTAAGCGGCGTCAAAAGAAGCGGTTGGCCGGAGGAGCACCGGCCGGCACTTTGTCCCCCGCTGAGGCGTTCGCGCCCGATAGCGGGGGCAATGGAGTAGGGGAGGGAGCGATGGATGACATGTTGCTCCAGACCATGGCGGAGTGGTCAATTGACGTGGCTGTGGTCGCCGAGCCATACTTCGTTCCCCCAGCGGATGACTGTTGGTTTGGGGACGTTGATGGCGTGGCGGCCATACATATCAGAAGATCCGCGATGGTCCCCCCCCCCCTGGCGATGGTGACCAGGGGCCCCGGGATCGTCGCGGTACAGTTAGAAAATATCGTCGGGATCGGGGTGTACTTTTCTCCGAATCGGCCTACCATCGGGTTCGGGCGGTTCCTGGACGGGCTAGAGGTGATCGCTCGTCACCTCGCTCCCTGTTCAGTGATACTGGCGGGGGACTTCAATGCGAAGTGTGTCGCTTGGGGTTCCCCATTCACGGACGCTCGTGGTAGGCTGCTGGAGGAGTGGGCGGTCACGGTCGGTCTCTGTATCGTTAACAGGGGCTCGACCGCGACCTGCGTGCGGTGGACGGGCGAGTCTATCGTGGACTTGACGTTCGCGAGCTCGCCCGTCGCACGGCGCATCCTCGGCTGGAGAGTGGTGGTGGGGGCGGAATCGTTGTTCGATCACCGGTATATCCGGTACGATCTTTCTGCCCCCGCGCCGACGCGGGCTGCAGGTGCCCGCGGGGTTGACCCCCCGCAGAGTGCATCCCGGTCATTCCCTAAGTGGGCACTGAAGCTCCTGAACAGGGAGCTCCTGGTGGAGGCCTCTATGGTGGCGGCATGGGTGCCCACGCGCCCACAACCTTTCGATGTGGAAACCGAGGCCGAATGGTTCCGGGGCGCAATGCACCGCATATGTGATGCTTCGATGCCCCGGGTCGGCCCTCGGCATTCTGGACGGCGACAGTCGCCCTGGTGGTCGCCCGAAATTGCAAGACTGCGTGCGGTATCCATTCGAGCGAGCCGCCAGTGCACTAGACACCGCCGTCGCCGCCGCCTGCGGCGCGACGAGCCCGTCGCGTTCGCGGAGGAGGAAACTCGGCTGCACCGCGAATATCGCGCTGTGAAGGACGCCCTGCGGCTGGCCATCAGGCGGGCCAAGGAGCAGAACATGGAGAGACTCTTGGAGGCGCTCGAAGTGGATCCGTGGGGGAGCCCATACAAATTGGTACGCGGCAAGTTACGCCCGTGGGCCTCCTCTATGACTGAGCGTCTCCAGCCTCAGCAGCTGCGGGACATCGTTTCGGCGTTGTTCCCGCAGGAGCGGGCGGGTTTTGTCCCTCCCGCTATGGGCGGGCCGTCTGACACCGTCGACGGCCAAGCTCCTGCTGAGGTGCCCCGTATTACCGAGGCAGAGCTCCGGGTGGCCGTTGTCAAGATGACTGCAAAAGACACGGCCCCCGGCCCGGACGGAGTCCACGGCCGGGTATTGGCCTTGGCCCTCGGTGCCCTGGGGGACCGGCTCCTTGAGCTATATAATGGCTGCTTGGAGTCGGGACGGTTTCCGTCGCTCTGGCGGACGGGTAGACTTGTGTTGTTGAGGAAGGAGGGGCGCCCGGTGGATACAGCCGCCTGTCCTATCGTACTACTGGACGAGGCGGGAAAATTGCTGGAACGTATTCTGGCTGCCCGCATCGTTCGGCACCTGGTCGGGGTGGGGCCTGACCTGTCGGCGGAGCAGTACGGCTTCCGGCCGTTCGACCGTGGATGCAATTCTTCGCGTGCGGTCCCTCTCGGACGAGGCCGTTCCTCGGGGTGGGGTGGCGCTGGCGGTGTCTCTTGA

Protein

MVEFPPPPSNMDEGWNVVARRGAKRAVPTAPQVGGAPATAASQAAPQQGRAPVAAKKKKTKKKSSRAPRSAAVVLTWLPAAEAKGMSYGDVVSRARAAIDLDEIGAGEGLRCRLTANGAKLLECPGADSSGIAERLAAKLRTVLPEEEVRVHRPVKMAELRVTGLDDCTTKDEVAAAIAARGNCALENITVGELRLGYTGAGSVWVRCPVEAATSLAAPPLGRPSGEPGRLRVGWIAARVRLLEPRAWWCLRCSSTGHCLAKCVSAVDRSGLCFRCGQPGHKAAVCSAAPHCLLCAAAGREADHRAGGKACPPASKNAERNRRRQAKRRQKKRLAGGAPAGTLSPAEAFAPDSGGNGVGEGAMDDMLLQTMAEWSIDVAVVAEPYFVPPADDCWFGDVDGVAAIHIRRSAMVPPPLAMVTRGPGIVAVQLENIVGIGVYFSPNRPTIGFGRFLDGLEVIARHLAPCSVILAGDFNAKCVAWGSPFTDARGRLLEEWAVTVGLCIVNRGSTATCVRWTGESIVDLTFASSPVARRILGWRVVVGAESLFDHRYIRYDLSAPAPTRAAGARGVDPPQSASRSFPKWALKLLNRELLVEASMVAAWVPTRPQPFDVETEAEWFRGAMHRICDASMPRVGPRHSGRRQSPWWSPEIARLRAVSIRASRQCTRHRRRRRLRRDEPVAFAEEETRLHREYRAVKDALRLAIRRAKEQNMERLLEALEVDPWGSPYKLVRGKLRPWASSMTERLQPQQLRDIVSALFPQERAGFVPPAMGGPSDTVDGQAPAEVPRITEAELRVAVVKMTAKDTAPGPDGVHGRVLALALGALGDRLLELYNGCLESGRFPSLWRTGRLVLLRKEGRPVDTAACPIVLLDEAGKLLERILAARIVRHLVGVGPDLSAEQYGFRPFDRGCNSSRAVPLGRGRSSGWGGAGGVS

Uniprot

A0A212EYI2 A0A0J7KQK3 A0A0J7N0R3 A0A0J7KFH2 A0A0J7NFZ0 A0A0J7KN48 + More
A0A0J7KLS2 A0A0J7NC28 A0A2A4JRW3 A0A0J7KNB1 A0A0J7KF91 A0A0J7KRB8 A0A0J7NJV1 A0A0J7KDK4 A0A0J7N8R4 J9LA43 J9L0J0 X1WZ64 J9KM84 J9KWM9 J9KT61 A0A139WAH4

Pubmed

22118469 18362917 19820115

EMBL

AGBW02011529 OWR46521.1 LBMM01004272 KMQ92618.1 LBMM01012412 KMQ86235.1 + More
LBMM01008278 KMQ89009.1 LBMM01005474 KMQ91485.1 LBMM01005188 KMQ91737.1 LBMM01005634 KMQ91348.1 LBMM01006996 KMQ90130.1 NWSH01000688 PCG74775.1 LBMM01005189 KMQ91734.1 LBMM01008445 KMQ88871.1 LBMM01003988 KMQ92922.1 LBMM01004138 KMQ92775.1 LBMM01008902 KMQ88543.1 LBMM01008226 KMQ89040.1 ABLF02018098 ABLF02027248 ABLF02011183 ABLF02041884 ABLF02018942 ABLF02041885 ABLF02011927 ABLF02009073 ABLF02030702 ABLF02042963 KQ971388 KYB24913.1

Proteomes

UP000007151 UP000036403 UP000218220 UP000007819 UP000007266

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF00098   zf-CCHC

Interpro

IPR001878   Znf_CCHC        + More
IPR000477   RT_dom
IPR005135   Endo/exonuclease/phosphatase
IPR036691   Endo/exonu/phosph_ase_sf
IPR036875   Znf_CCHC_sf

SUPFAM

SSF56219 SSF56219 + More
SSF57756 SSF57756

Gene 3D

3.60.10.10

ProteinModelPortal

A0A212EYI2 A0A0J7KQK3 A0A0J7N0R3 A0A0J7KFH2 A0A0J7NFZ0 A0A0J7KN48 + More
A0A0J7KLS2 A0A0J7NC28 A0A2A4JRW3 A0A0J7KNB1 A0A0J7KF91 A0A0J7KRB8 A0A0J7NJV1 A0A0J7KDK4 A0A0J7N8R4 J9LA43 J9L0J0 X1WZ64 J9KM84 J9KWM9 J9KT61 A0A139WAH4

PDB

1WDU E-value=2.30739e-08, Score=144

KEGG

101746120 no KO assigned | (RefSeq) uncharacterized LOC101746120

GO

GO:0008270 GO:0003676 GO:0003964 GO:0016593 GO:0005524 GO:0007179 GO:0006811 GO:0006032 GO:0016021 GO:0004672 GO:0048384

Length:

935

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.00364000000000001

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00013

outside

1 - 935

Pi

122.755758

Theta

19.869037

Tajima's D

1.192662

CLR

0.332067

CSRT

0.72406379681016

Interpretation

Uncertain

Sequence

Summary

Ontologies

Topology

Population Genetic Test Statistics

Multiple alignment of Orthologues

Gene Tree