Gene

KWMTBOMO04025

Annotation

reverse_transcriptase_[Bombyx_mori]

Location

Bomo_Chr7(-):9130086-9131480      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.478

CDS

ATGCCGCCTCTCGTACGCGCCTCAGGCCAACCACCGGCTTACGATGACGATGACAAGGCAGAGTTGCTGGCCGATGCACTGCAAGAGCAGTGCATCACCAGCACTCAACACGCGGACCCCGAACACACCGAGTTAGTCGACAGAGAGGTCGAGCGCAGAGCTTCCCTGCCGCCCTCGGACGCGTTACCCCCCATTACCACTTCCGAGGTTAAGGACGCGATCGATAGCCTACAACCACGAAAAGCTCCAGGCTCCGACGGCATCCGCAACCGCGCGCTAAAATTGTTACCAGCCCAACTAATAACGATGTTGGCCACCATTTTAAATGCTGCTATGACGAACTGCATCTTTCCCGCGGCGTGGAAAGAAGCTGACGTTATCGGCATACACAAGCCGGGCAAACCAAAGAACGAAACCGCGAGTTACCGCCCCATCAGTCTCCTCCCAGCGATAGGCAAACTATACGAACGGCTCCTTCGTAAACGCCTCTGGGACTTCGTTACCGCGAACAAAATTCTTATAGACGAGCAGTTTAGATTCCGCGCCAGACACTCGTGCGTCCATCAAGTGCACCGCCTCACGGAGCACATACTACTAGGGCTGAATAGGCGGAAACCCATCCCGACAGGAGCCCTCTTCTTCGATATAGCGAAAGCGTTCGACAAAGTCTGGCACAACGGTTTGATATACAAACTGTATAACATGGGAGTACCAGACAGACTCGTGCTAATCATACGAGACTACTTGTCGAACCGTTCGTTCCGATACCGAGTCGAGGGAACGCGTTCCCGCCCCCGTCACGTCACAGCCAGAGTCCCGCAAGGCTCCGCCCTCTCCCCGTTACTATTCAGTTTGTATATCAATGATATACCCCGATCTCCGGAGACCCATCTGGCGGTCTTCGCCGATGACACCGCCATCTATTACTCGTGTAGGCGTTGCTTCATCGAAGACTTCAGACCGCAGCTACCACCATGGGACAGTGGTTCCGGAAGTGGCGCATCGACATCAAGCCCACGAAAAGCACAGCGGTGCTCTTCAGAAGGGGTCGCCCTCCGAACACCACGCTGA

Protein

MPPLVRASGQPPAYDDDDKAELLADALQEQCITSTQHADPEHTELVDREVERRASLPPSDALPPITTSEVKDAIDSLQPRKAPGSDGIRNRALKLLPAQLITMLATILNAAMTNCIFPAAWKEADVIGIHKPGKPKNETASYRPISLLPAIGKLYERLLRKRLWDFVTANKILIDEQFRFRARHSCVHQVHRLTEHILLGLNRRKPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTRSRPRHVTARVPQGSALSPLLFSLYINDIPRSPETHLAVFADDTAIYYSCRRCFIEDFRPQLPPWDSGSGSGASTSSPRKAQRCSSEGVALRTPR

Uniprot

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   D7EM17   + More
A0A139W8G9   A0A139WA11   A0A1Y1NA23   A0A2S2QJM7   A0A2S2PX53   A0A139W8R7   X1WPZ3   A0A139W8K2   A0A2S2PWA8   V5GNF3   A0A2S2NPG3   X1WWC4   X1WMU5   A0A2R7WPC5   J9KKL3   A0A2S2QEE0   A0A2S2NCK2   A0A182GA28   A0A2H8U0H5   A0A2S2R9D4   X1WXR6   A0A2S2NGV8   A0A2S2PPK8   A0A1B6J5Z9   A0A1Y1K0C8   X1WXE6   A0A023EYS8   A0A2S2QA24   A0A2S2PA10   A0A2J7R7D0   X1WR00   A0A2S2P698   A0A2J7Q059   A0A2J7RIW7   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7PMP9   A0A2S2N814   A0A2J7RM10   A0A2J7PMP6   A0A2J7QUJ9   A0A2J7Q2R1   A0A2J7QEZ4   A0A2J7Q5G9   A0A0C9RJA4   A0A2J7RB54   A0A2J7RS77   J9M108   A0A2J7RPU2   A0A2S2Q352   X1WN18   J9LC21   X1WZH0   A0A2J7Q0Q6   A0A2S2N6C8  

Pubmed

10333566    26354079    10380107    18362917    19820115    28004739    + More
26483478    25474469   

EMBL

AB018558    BAA76304.1    U07847    AAA17752.1    AB055391    BAB21761.1    + More
KQ459265    KPJ02064.1    AF081103    AAC72921.1    KQ973412    EFA12510.2    KQ973342    KXZ75569.1    KQ971729    KYB24751.1    GEZM01008457    JAV94772.1    GGMS01008766    MBY77969.1    GGMS01000737    MBY69940.1    KQ973073    KXZ75680.1    ABLF02024191    ABLF02066493    KQ973213    KXZ75606.1    GGMS01000625    MBY69828.1    GALX01005359    JAB63107.1    GGMR01006408    MBY19027.1    ABLF02003961    ABLF02059872    ABLF02014862    ABLF02014866    ABLF02061908    KK855204    PTY21424.1    ABLF02029306    ABLF02029314    ABLF02060138    GGMS01006359    MBY75562.1    GGMR01002322    MBY14941.1    JXUM01155316    KQ572171    KXJ68070.1    GFXV01007093    MBW18898.1    GGMS01017365    MBY86568.1    ABLF02008605    ABLF02008608    ABLF02008609    ABLF02008610    ABLF02017023    GGMR01003407    MBY16026.1    GGMR01018716    MBY31335.1    GECU01013097    JAS94609.1    GEZM01099921    GEZM01099920    GEZM01099918    GEZM01099906    JAV53125.1    ABLF02016634    GBBI01004395    JAC14317.1    GGMS01005381    MBY74584.1    GGMR01013409    MBY26028.1    NEVH01006736    PNF36716.1    ABLF02003242    ABLF02006260    ABLF02042516    GGMR01012305    MBY24924.1    NEVH01020071    PNF21969.1    NEVH01003017    PNF40781.1    NEVH01007443    PNF35684.1    NEVH01018383    PNF23463.1    NEVH01023961    PNF17613.1    GGMR01000676    MBY13295.1    NEVH01021586    NEVH01006600    NEVH01002584    PNF19589.1    PNF37419.1    PNF41868.1    NEVH01023962    PNF17612.1    NEVH01010546    PNF32261.1    NEVH01019080    PNF22876.1    NEVH01015305    NEVH01006671    PNF27154.1    PNF37357.1    NEVH01017559    PNF23833.1    GBYB01008290    JAG78057.1    NEVH01005938    PNF38077.1    NEVH01000280    PNF43672.1    ABLF02005298    ABLF02018860    NEVH01001355    PNF42855.1    GGMS01002955    MBY72158.1    ABLF02021177    ABLF02027367    ABLF02066338    ABLF02036316    ABLF02036319    ABLF02048663    ABLF02066977    ABLF02034467    NEVH01019964    PNF22161.1    GGMR01000086    MBY12705.1   

Proteomes

UP000053268    UP000007266    UP000007819    UP000069940    UP000249989    UP000235965    + More

PRIDE

Q9XXW0    Q93137    Q9BPQ0   

Pfam

PF14529   Exo_endo_phos_2        + More
PF00078   RVT_1
PF07530   PRE_C2HC
PF13358   DDE_3
PF03372   Exo_endo_phos
PF10551   MULE

Interpro

IPR000477   RT_dom        + More
IPR005135   Endo/exonuclease/phosphatase       
IPR036691   Endo/exonu/phosph_ase_sf       
IPR006579   Pre_C2HC_dom       
IPR038717   Tc1-like_DDE_dom       
IPR001878   Znf_CCHC       
IPR018289   MULE_transposase_dom       
IPR013083   Znf_RING/FYVE/PHD       

SUPFAM

SSF56219   SSF56219       

Gene 3D

3.60.10.10     3.30.40.10    

ProteinModelPortal

Q9XXW0   Q93137   Q9BPQ0   A0A0N1PFV1   O96546   D7EM17   + More
A0A139W8G9   A0A139WA11   A0A1Y1NA23   A0A2S2QJM7   A0A2S2PX53   A0A139W8R7   X1WPZ3   A0A139W8K2   A0A2S2PWA8   V5GNF3   A0A2S2NPG3   X1WWC4   X1WMU5   A0A2R7WPC5   J9KKL3   A0A2S2QEE0   A0A2S2NCK2   A0A182GA28   A0A2H8U0H5   A0A2S2R9D4   X1WXR6   A0A2S2NGV8   A0A2S2PPK8   A0A1B6J5Z9   A0A1Y1K0C8   X1WXE6   A0A023EYS8   A0A2S2QA24   A0A2S2PA10   A0A2J7R7D0   X1WR00   A0A2S2P698   A0A2J7Q059   A0A2J7RIW7   A0A2J7R4B7   A0A2J7Q4F7   A0A2J7PMP9   A0A2S2N814   A0A2J7RM10   A0A2J7PMP6   A0A2J7QUJ9   A0A2J7Q2R1   A0A2J7QEZ4   A0A2J7Q5G9   A0A0C9RJA4   A0A2J7RB54   A0A2J7RS77   J9M108   A0A2J7RPU2   A0A2S2Q352   X1WN18   J9LC21   X1WZH0   A0A2J7Q0Q6   A0A2S2N6C8  

PDB

6AR3     E-value=0.00610411,     Score=93

KEGG

105842435    no KO assigned | (RefSeq) uncharacterized LOC105842435

GO

GO:0003964   GO:0004519   GO:0008270   GO:0003676   GO:0016021  

Length:

356

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

1.41535

Exp number, first 60 AAs:

0

Total prob of N-in:

0.03280

outside

1  -  356

 

 

Pi

12.012877

Theta

4.411884

Tajima's D

3.36615

CLR

0.169032

CSRT

0.993400329983501

Interpretation

Possibly Balancing Selection