Gene

KWMTBOMO04023

Pre Gene Modal

BGIBMGA010268

Annotation

PREDICTED:_trafficking_protein_particle_complex_subunit_10_[Bombyx_mori]

Location

Bomo_Chr7(+):9102661-9112131      View in EpiBrowser

Full name

Trafficking protein particle complex subunit 10      

Alternative Name

Shal Interactor of Di-Leucine Motif
Trafficking protein particle complex subunit TMEM1
Transport protein particle subunit TMEM1

Location in the cell

Nuclear   Reliability : 2.14

CDS

ATGTGCACGGCAGCGCAAGCACCGCTCCTGCATCATGCCAAAGATAAGTTGCACGAATTGGGTAAGCTCTGTGGTCTACTCCCCGGTTCGCCGGAACCCACGTCAGAGCAACTCCATCTAGTCGTGATGCTGTCCGCGGGCATGGGGGACAGCGAACCCAACTCGCAGCCGCCCACGCCGACGGACAGGCTCAAGGAGGCCCTGTGCAGCGCTCCCTCGTTCCAGCAGTACTATCTGGAGCTGGCCGAGCTGGCGATGGGAACTTACAAGCACATAGGGAGGTTAAGATTCGCTCGGCTTATCGGTAGGGAGCTGGCATCGTTCTACTCCGAGTTGGGCGAGACCAGCAAGGCGGTGGTGTTCCTGATGGACGCGTTGAGGTCGTACGAGGAACAAGGCTGGAAGGAGCTGGCGGCACAAACGAGATTAGAATTGGTTTCGGCGGCGAAGAAAATGAAGGACATGGATAGATACGCGAAGCTCTCTGCAACAATAGCATGCACACAAGAATTAGAAATACTAGTCAGGAATTTTTACTTCGAGGAAATGATGAGGACCATACGTGAGGATCTGGCGAACAAAACCGACACGGTGCTGGCCGAATTGAACGAGTGCTTCAAGGTCAAGTCTGTCTCGTTACTGCCACCCGAAAGGGGTCTTTACATCACCGAGAATAAGGTTCAATGTCGTGTAGTCATAGAAAGTTTTCTACCTAAAGATATAAAATGTACGAAGGCAGCAATAAGCATAGAGTTATTTAAAGACGACAAGGTAGCGGAGAAGAAGCCTCCCGTCAAACACAAGACTGATTTAAGCGTTAACTGTAGTGTAGGAATACAGACCGGCTCGCCGAAGAGGAACGTCGATAAAATTGAAGATGCAATAAATAGTTTAGTTTGTAGCTTAAGACTCGATGATTTAAAACCCAACAATCCTTTACTAAACCCGTTACATATAACTTCGCAATTGCACTACAAAGAGGACAAGTCTTTACAAAAGGTGACCGTGGAATGTCACAACCCTAAAATGCCGCTGCGTCGTTCTGACAGTAGCAAATATCGGAAGCCGTCGGCGACGATCAGAAACAACTACCAGAATTGCTTTTCCAGTGAGGATATATTACTGAAACCTGGCTCCAACGACCTGATACTGGATTTTACAGCGACAGAAAAGGGCGCGTTTAAATTAGGTCAAATATCGATAACAGTGGAGGGGAAATTGGAGTTTTTATCGAACGCTTTGATTGGCGGTAAAGTCGGATTCGAAGTGGTAACTCAGGGGGTCAACGTTTATTTAAACAAAGTCGAACCTAAGAAGGATCTGGTCGCTGGCTTGGAGCACGCAATGGAGCTAGTTGTGACTTGTGGGAGTACCAGGATTGAAGAGGACTCGAAGATATCATTGAAGACGACATCTGGGTTGCTGATTCGGCTGTCGGATGAGTTCTCTATAATGTCTCGCGAGGTGTCGGTGCGGGTCGCGTGCGAACCCTTCGACACGGCTACGATACCGTTGACCCTGTTCGCCAGCCTTCAGCCCAGGAGGGAGAGGAGCGTCGAGCACGTCGTTTGGATAACGTGCCCCTGGTTGGAGTCGGCAATGGAAGTTCCTCTACACTTCTCCCCGCCCATGATCGCGTCGTGGCGCCTCCTCACTTCCAACACCCGGAAGTTCGTGCACGTGACTCTGAAGTCGACGGTCGCGCACTACGTCCAGTTCGCGCTCACCGATGCCGGCCTGCAGTGCGACGGTAACAACACCGTGTCGGATTTGAACCCGAAGAAGAGCGATCATATGTCTAGGCTGTCCAATTTGGCTGGTGGTATGTCCTCACGCGTGAGCACCATTCCTGTCGCGTAG

Protein

MCTAAQAPLLHHAKDKLHELGKLCGLLPGSPEPTSEQLHLVVMLSAGMGDSEPNSQPPTPTDRLKEALCSAPSFQQYYLELAELAMGTYKHIGRLRFARLIGRELASFYSELGETSKAVVFLMDALRSYEEQGWKELAAQTRLELVSAAKKMKDMDRYAKLSATIACTQELEILVRNFYFEEMMRTIREDLANKTDTVLAELNECFKVKSVSLLPPERGLYITENKVQCRVVIESFLPKDIKCTKAAISIELFKDDKVAEKKPPVKHKTDLSVNCSVGIQTGSPKRNVDKIEDAINSLVCSLRLDDLKPNNPLLNPLHITSQLHYKEDKSLQKVTVECHNPKMPLRRSDSSKYRKPSATIRNNYQNCFSSEDILLKPGSNDLILDFTATEKGAFKLGQISITVEGKLEFLSNALIGGKVGFEVVTQGVNVYLNKVEPKKDLVAGLEHAMELVVTCGSTRIEEDSKISLKTTSGLLIRLSDEFSIMSREVSVRVACEPFDTATIPLTLFASLQPRRERSVEHVVWITCPWLESAMEVPLHFSPPMIASWRLLTSNTRKFVHVTLKSTVAHYVQFALTDAGLQCDGNNTVSDLNPKKSDHMSRLSNLAGGMSSRVSTIPVA

Description

May play a role in vesicular transport from endoplasmic reticulum to Golgi (By similarity). Has a role in one of the several mechanisms underlying dendritic localization of Shal channels.

Subunit

Part of the multisubunit TRAPP (transport protein particle) complex (By similarity). Interacts with Shal (via C-terminal dendritic targeting motif).

Similarity

Belongs to the TMEM1 family.

Keywords

Cell projection   Complete proteome   ER-Golgi transport   Golgi apparatus   Reference proteome   Transport  

Feature

chain  Trafficking protein particle complex subunit 10

Uniprot

H9JL67   A0A2W1CNX6   A0A2A4JHN0   A0A2H1W0N4   A0A194PT11   A0A212EUC2   + More
A0A194RMK7   A0A2J7QA27   A0A2P8YY38   A0A067QSA2   A0A154PH83   E2A0P2   F4W839   A0A195EZE1   A0A026WI98   E9J503   A0A3L8E0G8   A0A0N0BDV1   A0A0J7L374   A0A195CLG7   A0A088AJ40   A0A151X4M6   E2B8E7   A0A158NDR7   A0A195D7M5   A0A0L7R7Z9   A0A2A3E6L9   A0A310SEP3   A0A195BPE0   A0A232FMA8   K7ISG8   A0A1B6DTM9   A0A1B6CSP2   B0WLN5   Q16RX3   A0A1S4FRN1   A0A182G317   A0A1Q3F869   A0A3F2YX77   A0A182M9T0   A0A182VQ33   A0A2M4ABH4   A0A182RH39   A0A2M4ABR4   A0A2M4ABD4   A0A1B0DP71   A0A182NMP8   W5J2W7   A0A182FSX0   A0A2M4BAU0   A0A182PCR8   A0A2M4BBF5   A0A182JJA6   A0A2M4BAS7   A0A1B0CI91   A0A182JT61   A0A139WBM0   A0A182HZG9   A0A084W2N9   A0A182LQH9   A0A182V253   A0A182X391   Q7QKA8   A0A182U6Y6   A0A0T6AWT4   A0A1Y1M615   W8ASI2   W8BQL7   A0A1J1HYY0   A0A0K8VM86   A0A034VIE6   A0A336MVC5   A0A336MQ46   B3MXA2   A0A0N8NZX6   U4UAT2   N6UHW9   A0A1W4VZJ4   A0A1W4VN09   A0A3B0KC07   B4NBB3   Q294T9   A0A0R3NJN1   B4GMM1   A0A0R3NWS7   B5DUI6   A0A1I8N2Z6   A0A0L0C850   B4QZ42   A0A1I8PWT6   B4KAG4   A0A0Q9X157   T1PHI3   B4HE09   Q9VFB7   A0A0R1E828   B4PS80   B3P0R7   A0A023EZE9   B4JGB1  

Pubmed

19121390    28756777    26354079    22118469    29403074    24845553    + More
20798317    21719571    24508170    21282665    30249741    21347285    28648823    20075255    17510324    26483478    20920257    23761445    18362917    19820115    24438588    20966253    12364791    14747013    17210077    28004739    24495485    25348373    17994087    23537049    15632085    25315136    26108605    10731132    12537572    12537569    20550966    17550304    25474469   

EMBL

BABH01011730    BABH01011731    BABH01011732    NHMN01022918    PZC87377.1    NWSH01001544    + More
PCG70902.1    ODYU01005618    SOQ46649.1    KQ459600    KPI94270.1    AGBW02012412    OWR45095.1    KQ459995    KPJ18560.1    NEVH01016339    PNF25422.1    PYGN01000291    PSN49161.1    KK852994    KDR12739.1    KQ434899    KZC10834.1    GL435626    EFN72945.1    GL887888    EGI69709.1    KQ981906    KYN33277.1    KK107207    EZA55391.1    GL768123    EFZ12077.1    QOIP01000002    RLU26204.1    KQ435851    KOX70722.1    LBMM01000883    KMQ97292.1    KQ977600    KYN01543.1    KQ982548    KYQ55178.1    GL446312    EFN88046.1    ADTU01012806    KQ981153    KYN08876.1    KQ414637    KOC66958.1    KZ288368    PBC26809.1    KQ760629    OAD59730.1    KQ976424    KYM88375.1    NNAY01000019    OXU31886.1    GEDC01008264    GEDC01007513    JAS29034.1    JAS29785.1    GEDC01020911    JAS16387.1    DS231988    EDS30577.1    CH477694    EAT37176.1    JXUM01140583    KQ569087    KXJ68771.1    GFDL01011318    JAV23727.1    AXCN02001211    AXCM01000279    GGFK01004788    MBW38109.1    GGFK01004910    MBW38231.1    GGFK01004776    MBW38097.1    AJVK01007931    ADMH02002125    ETN58652.1    GGFJ01000999    MBW50140.1    GGFJ01000997    MBW50138.1    GGFJ01000998    MBW50139.1    AJWK01013105    AJWK01013106    KQ971372    KYB25316.1    APCN01001975    ATLV01019658    KE525276    KFB44483.1    AAAB01008799    EAA03661.5    LJIG01022634    KRT79522.1    GEZM01043057    JAV79346.1    GAMC01014735    JAB91820.1    GAMC01014733    GAMC01014731    JAB91824.1    CVRI01000030    CRK92532.1    GDHF01012325    JAI39989.1    GAKP01017634    JAC41318.1    UFQS01002542    UFQT01002542    SSX14240.1    SSX33655.1    UFQS01000939    UFQT01000939    SSX07864.1    SSX28098.1    CH902629    EDV35325.1    KPU75548.1    KB631985    ERL87716.1    APGK01019569    KB740112    ENN81340.1    OUUW01000008    SPP83689.1    CH964232    EDW81077.1    CM000070    EAL28875.2    KRT01145.1    CH479185    EDW38095.1    CH673789    KRT05559.1    EDY71552.1    JRES01000776    KNC28425.1    CM000364    EDX12870.1    CH933806    EDW15677.1    KRG01677.1    KA648282    AFP62911.1    CH480815    EDW42101.1    AE014297    AY118591    CM000160    KRK03778.1    EDW97500.1    CH954181    EDV48965.1    GBBI01004090    JAC14622.1    CH916369    EDV92580.1   

Proteomes

UP000005204    UP000218220    UP000053268    UP000007151    UP000053240    UP000235965    + More
UP000245037    UP000027135    UP000076502    UP000000311    UP000007755    UP000078541    UP000053097    UP000279307    UP000053105    UP000036403    UP000078542    UP000005203    UP000075809    UP000008237    UP000005205    UP000078492    UP000053825    UP000242457    UP000078540    UP000215335    UP000002358    UP000002320    UP000008820    UP000069940    UP000249989    UP000075886    UP000075883    UP000075920    UP000075900    UP000092462    UP000075884    UP000000673    UP000069272    UP000075885    UP000075880    UP000092461    UP000075881    UP000007266    UP000075840    UP000030765    UP000075882    UP000075903    UP000076407    UP000007062    UP000075902    UP000183832    UP000007801    UP000030742    UP000019118    UP000192221    UP000268350    UP000007798    UP000001819    UP000008744    UP000095301    UP000037069    UP000000304    UP000095300    UP000009192    UP000001292    UP000000803    UP000002282    UP000008711    UP000001070   

PRIDE

H9JL67    Q9VFB7   

Pfam

PF12584   TRAPPC10        + More
PF11817   Foie-gras_1

Interpro

IPR022233   TRAPP_II_complex_TRAPPC10        + More
IPR021773   TPC11       
IPR011990   TPR-like_helical_dom_sf       

SUPFAM

SSF48452   SSF48452       

Gene 3D

1.25.40.10    

ProteinModelPortal

H9JL67   A0A2W1CNX6   A0A2A4JHN0   A0A2H1W0N4   A0A194PT11   A0A212EUC2   + More
A0A194RMK7   A0A2J7QA27   A0A2P8YY38   A0A067QSA2   A0A154PH83   E2A0P2   F4W839   A0A195EZE1   A0A026WI98   E9J503   A0A3L8E0G8   A0A0N0BDV1   A0A0J7L374   A0A195CLG7   A0A088AJ40   A0A151X4M6   E2B8E7   A0A158NDR7   A0A195D7M5   A0A0L7R7Z9   A0A2A3E6L9   A0A310SEP3   A0A195BPE0   A0A232FMA8   K7ISG8   A0A1B6DTM9   A0A1B6CSP2   B0WLN5   Q16RX3   A0A1S4FRN1   A0A182G317   A0A1Q3F869   A0A3F2YX77   A0A182M9T0   A0A182VQ33   A0A2M4ABH4   A0A182RH39   A0A2M4ABR4   A0A2M4ABD4   A0A1B0DP71   A0A182NMP8   W5J2W7   A0A182FSX0   A0A2M4BAU0   A0A182PCR8   A0A2M4BBF5   A0A182JJA6   A0A2M4BAS7   A0A1B0CI91   A0A182JT61   A0A139WBM0   A0A182HZG9   A0A084W2N9   A0A182LQH9   A0A182V253   A0A182X391   Q7QKA8   A0A182U6Y6   A0A0T6AWT4   A0A1Y1M615   W8ASI2   W8BQL7   A0A1J1HYY0   A0A0K8VM86   A0A034VIE6   A0A336MVC5   A0A336MQ46   B3MXA2   A0A0N8NZX6   U4UAT2   N6UHW9   A0A1W4VZJ4   A0A1W4VN09   A0A3B0KC07   B4NBB3   Q294T9   A0A0R3NJN1   B4GMM1   A0A0R3NWS7   B5DUI6   A0A1I8N2Z6   A0A0L0C850   B4QZ42   A0A1I8PWT6   B4KAG4   A0A0Q9X157   T1PHI3   B4HE09   Q9VFB7   A0A0R1E828   B4PS80   B3P0R7   A0A023EZE9   B4JGB1  

KEGG

101745540    K20307 trafficking protein particle complex subunit 10 | (RefSeq) trafficking protein particle compl

GO

GO:0016021   GO:0005829   GO:0034498   GO:0006891   GO:1990071   GO:0030425   GO:0043204   GO:0043087   GO:0005794   GO:0030008  

Subcellular location

Golgi apparatus  
cis-Golgi network  
Cell projection  
Dendrite  
Perikaryon  

Length:

619

Number of predicted TMHs:

0

Exp number of AAs in TMHs:

0.01282

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00074

outside

1  -  619

 

 

Pi

20.017106

Theta

2.192034

Tajima's D

0.542365

CLR

0.367958

CSRT

0.576921153942303

Interpretation

Uncertain