Gene

KWMTBOMO04016  Validated by peptides from experiments

Pre Gene Modal

BGIBMGA010266

Annotation

PREDICTED:_DE-cadherin_isoform_X1_[Papilio_xuthus]

Location

Bomo_Chr7(+):8650571-8707076      View in EpiBrowser

Location in the cell

Nuclear   Reliability : 2.068

CDS

ATGCCAATACACACAGCCTACGTACCAGCCTCATCACCCAAGCTGGCCGTAAAGGACAACCACAAGCCACTGTTCACAAACTGCTTGAACTACAGGCCCACGGTAAAAGAAGAGGCACCTGTGGGCACATTCGTATTCCAGGTACATGCCGAAGATCGCGATCCGCCGGAAATGGGCGGAACTGTCACGTACAAATTCGTCTCCACTCCCGGTGAAAAGGAAAGATTTCACGTCGATCCCGCAAGTGGGAATATCACCACAGCGGACATTTTTGATCACGACGAGCCGTCCAGAGAGAAAGAAGCATATATCACAGTGAGAGCGAGTGACAACGGCCAACCTCAACTTGACGATGCGTGCACGATTAAAATCATCATTGAGGACATTAATGACAATCCGCCTGTTTTCGATAAAGTTTCGTATTCGGAGTCAGTCCCTCAAGATCTGCCGAGCGGAAGAGAGGTGATGAGGATATCAGCAACAGATATAGACGATGGAAACAATTCAATAGTGAATTATAAATTAGACCCCAATTCTCCGGATGGAGCATATTTTATTATTGATCCAGACAATGGAGTCATATTTTTAAATAAGACAATTGATAAACCGCCCGGGTATAAATTTAAACTGAGCGCTATAGTCACAGACAAAGGCGTTGAGCAACAACAAAGTTCCATAAGTTTAGACATACAAGTTGTCGAATCCAACAAGAAGAGCCCATCATTCATAGAAGTTCCAGACGGACCCATCAGATTAAAAGAAAATTACGCAGATTTCAACACACCAATAGCTACAATAAGGGCGGTTTCCAACATACCGGATGAGAACAAGCTGCAGTTCGAATTAGTTCAAGGCCAAACAGAACAAACGAATAAATGGCATACATTCGTTCTGGAACCCGAAGCCGATACAGCTTACGTTAAATTAGGGAATCACTTGGACTATGAGAAGATAACTGATTACACCCTCACTGTAAGAATACAGAATAATTATAAATTAGCAGCCGAAACAATAATCCAGATCGAAGTGGAAGATGTCAACGACAACATACCAATATTCAGCGAAATCCGTTCCGGTAGTGTATTAGAAAACGAGAATCCTGGCACGCCTGTGATGCAGGTCCGAGCATTCGACGCAGATGGGACCGCAGCCAACAACCAAGTCACTTACGAACTGGGAGACCCCTCAGACCCTTTCGCTATAGACAGCATCACCGGGAACATCACAACCTTAAAGATGTTTGATCGGGAAGAACGAAGCTTTTACAATATTAAGATCATAGCCACCGATAATTCTGAATCAGCCCTTATACCGGGGAAACACAATGCAGGACAGCAAGTTTTCTTGATCGAGATCGCTGATAAGAATGACAATCCACCACATTTCACGCAGCAAACGTATGTTGCGGAGTCGATTGCTGAGAATGCAAATATTAATGAACTCGTCACTGTGGTGAACGCTAGAGACATTGATACAGCTTCCATAGTATCTTACAGCATCGTAGCGGGAAACACTTACGACGCCTTCTTGATAAGAAATTTCACAGGCGAAATCAGAGTGAACAACGAATTGGATTACGAAAATATAACGAGCTATAGACTCGATGTTCGAGCCTGCGACGGCATATACGAAGACAATGCTGTCGTCATTATAAACATTGAGAATTTGAACGACAATCCTCCAGTTTTTGTTACAAATTACACGAAAACCATTGAGGAGGAACGGCTTTACGAAGGGTGTATAGTTAAGGTTGAAGCCTACGACCCAGATATAAAAGATAGAAACGCTCCACAAAACATAATCTATTCCCTTGTGAAGCACGAACAGAAGGAATTCTTGCAAATTGACAATGACGGCTGCCTACGTTTGACCAAACCACTGGACCGGGACCAACCCTCAGGATTCACCAGATGGCAGTTCTTGATTATGGCTGCTGACCACGGAGGCCGATTAGGCTCCGACAGTTTGAGGTCCACAACTGAAGTCATCTTGGAACTGACCGATATAAACGATAACGCGCCTTTCCTGACGAATACTCAGCCGGTCATTTGGTACGAGAATGAGCCACCAGGCCAGGTTGTGGTGCTGACTGCGAAAGATTACGACTCCAACGAGAATGGCCCGCCATTCACATTCGCTTTGAACGAATCTGCGTCTTTTGACATCCGATCCAAATTCCAAATACAAGGGAACATCCTTTCTACATTAGTATCCTTTGATAGAGAGCAAAGAAAAGAATACAAGATACCTGTAGCTATAACCGACTCTGGCACTCCGAGGTTGACGGGTGTTTCGGTGCTACATGTCGTCATAGGTGACAGGAATGATAATCCAATGGGACCAGGCCATAGTGACATCTTCGTTTATAACTATAAGGGCGAGGCACCAGACACGGAGATTGGTAGGGTGTTTGTCGACGACCCCGACGACTGGGATCTACCGGACAAGAGATTCATGTGGCTGCCTTCATACGAGCAGAGGAGCCCGTACTTCGACGTCCACAGCAACACGGGCATGATAACAATGAAAGAGGGAACCCCTAACGGCACCTATTTGTTGAGATTCAATGTAACAGAGGAGAACGAACCCATAGTCGCCTTCCATTGGGTCGAGGCTACAGTCAATGTGACGATCAAGGAAATACCAGAAGAAGCCGTCGACAAATCTGGGTCAATTCGTTTCGTTAACGTCACCGCTGAAGACTTCATCATACCTGAGGAGGATGGTACCAGTAAAAAGGATAAGCTCCATCGTCGTCTAGCCCAGCTGTACAACACTTCCTTGGACAACGTAGACGTCTTCACGGTATTCAGCAAGCCGACTGTGAAAGACATGTTTTTGGATGTGAGGTTCTCGGCTCACGGCTCGCCTTACTACTCACCAGAGAAACTTGACAGCATGGCGGTTGGGATACAGGAGAAGCTGGAAGAAGAACTCCAATCAAGAATATACATGGTGCACATCGATGAGTGTCTGATTGAGAAGGAGCAATGCGAGGACTCATGCCGTAATGTGCTCATAAAGAATAACGTACCGCTTTCCGTGTATACCAACACAACTAGCTTCGTAGGAGTCTCCGCGAGGGTCGAATCCGAGTGCACGTGTGATGTACAGGAGCCACTGATTTGCTTAAACGGAGGTACAGCTTTTGCGGACAAGTGCGAGTGCCCCGAAGGTCTGAACGGACCTCATTGTGAGCAGACATCGATCGGTTTCCATGGCGACGGGTGGGCCATGTATGCACCGCCTCCCGCGTGCCACGAGGGCAGGGTCACCCTGACCGTGACCTCACATTCCAAAAATAGTCTTGTCTTTTACATGGGGCCTCTGAAGCACAATCCGTTGTTGAACGTTCAAGACTTCATGTCTTTGGAGCTGAAGGATGGTCATCTGCTGCTGCTCGTGAACTACGGCTCGGGTATAACGCGACTAAACAACACTGTCGTGGAGGTGGCCGACGGAAAACCTCATTTAATAGAAATAGTGCTCACAAGGAACTCGATCGAGATGTTTGTGGATCGTTGCAAACTGTCCACCTGTATGAGTCTGTCGGCTCCTATAAGGCCCAACGAAATACTTAATGTCAACGGTCCCTTACAACTCGGCGGGGCTAGCATCGATCTGGAAGCTTTGGCTCAATCGTTCGGCTGGTCCATGGTCCCGACTAACCAGAACTTCATCGGATGCATAAGCAATTTCACGTACAATGATTTTATGTACAATCTTGGCCAGCCGTCTATGCACAAGAACGCCGATCCAAGCTGTCAGAGAAGCATGTTCACAGCCGTTACGTTCGGAATAGATGCCAACTTCCTAGTAGCCATATTGGTGTGCATCGCGATTTTAGTCATTTTGCTGTTAGCGGTAGTGGTACACCGGCGTCGCGCCGACGCGTGGGCGGAGAAAGAGCTGGACGATATAAGGGAGAACATCATCGCCTACGAAGACGAGGGCGGTGGCGAAGGAGACGCCGGATACGACCTCCATGTCCTTAGACAAATGTACGACGGACCGCCTCCAGATACCGGCGCTTACCAACAAAGAAGGCTACTATTAGAGACGACACCGGACATATCAGGGTTCCTGGACGATAAGAAGTCGGTGTTGGATCGCGATCCGGACATCATTCCTTACGATGACGTCAGACACTACGCGTACGAAGGCGACGGGAACACCAGCGGGTCCTTGTCTTCGTTGGCCAGCTGTACCGACGACGAAGATCTGAAATTCAACTACCTATCGACATTCGGTCCTCGATTCCGCAAGCTGGCCGACATGTACGGCGACTCCGACGACGAGAGACAACCGCACGAGGAGTCGTGGTGCTAG

Protein

MPIHTAYVPASSPKLAVKDNHKPLFTNCLNYRPTVKEEAPVGTFVFQVHAEDRDPPEMGGTVTYKFVSTPGEKERFHVDPASGNITTADIFDHDEPSREKEAYITVRASDNGQPQLDDACTIKIIIEDINDNPPVFDKVSYSESVPQDLPSGREVMRISATDIDDGNNSIVNYKLDPNSPDGAYFIIDPDNGVIFLNKTIDKPPGYKFKLSAIVTDKGVEQQQSSISLDIQVVESNKKSPSFIEVPDGPIRLKENYADFNTPIATIRAVSNIPDENKLQFELVQGQTEQTNKWHTFVLEPEADTAYVKLGNHLDYEKITDYTLTVRIQNNYKLAAETIIQIEVEDVNDNIPIFSEIRSGSVLENENPGTPVMQVRAFDADGTAANNQVTYELGDPSDPFAIDSITGNITTLKMFDREERSFYNIKIIATDNSESALIPGKHNAGQQVFLIEIADKNDNPPHFTQQTYVAESIAENANINELVTVVNARDIDTASIVSYSIVAGNTYDAFLIRNFTGEIRVNNELDYENITSYRLDVRACDGIYEDNAVVIINIENLNDNPPVFVTNYTKTIEEERLYEGCIVKVEAYDPDIKDRNAPQNIIYSLVKHEQKEFLQIDNDGCLRLTKPLDRDQPSGFTRWQFLIMAADHGGRLGSDSLRSTTEVILELTDINDNAPFLTNTQPVIWYENEPPGQVVVLTAKDYDSNENGPPFTFALNESASFDIRSKFQIQGNILSTLVSFDREQRKEYKIPVAITDSGTPRLTGVSVLHVVIGDRNDNPMGPGHSDIFVYNYKGEAPDTEIGRVFVDDPDDWDLPDKRFMWLPSYEQRSPYFDVHSNTGMITMKEGTPNGTYLLRFNVTEENEPIVAFHWVEATVNVTIKEIPEEAVDKSGSIRFVNVTAEDFIIPEEDGTSKKDKLHRRLAQLYNTSLDNVDVFTVFSKPTVKDMFLDVRFSAHGSPYYSPEKLDSMAVGIQEKLEEELQSRIYMVHIDECLIEKEQCEDSCRNVLIKNNVPLSVYTNTTSFVGVSARVESECTCDVQEPLICLNGGTAFADKCECPEGLNGPHCEQTSIGFHGDGWAMYAPPPACHEGRVTLTVTSHSKNSLVFYMGPLKHNPLLNVQDFMSLELKDGHLLLLVNYGSGITRLNNTVVEVADGKPHLIEIVLTRNSIEMFVDRCKLSTCMSLSAPIRPNEILNVNGPLQLGGASIDLEALAQSFGWSMVPTNQNFIGCISNFTYNDFMYNLGQPSMHKNADPSCQRSMFTAVTFGIDANFLVAILVCIAILVILLLAVVVHRRRADAWAEKELDDIRENIIAYEDEGGGEGDAGYDLHVLRQMYDGPPPDTGAYQQRRLLLETTPDISGFLDDKKSVLDRDPDIIPYDDVRHYAYEGDGNTSGSLSSLASCTDDEDLKFNYLSTFGPRFRKLADMYGDSDDERQPHEESWC

Description

Cadherins are calcium-dependent cell adhesion proteins.

Uniprot

A0A2A4K391   A0A2W1BKM6   A0A2A4K2M1   A0A194PT07   A0A194RM18   M4M3L2   + More
A0A3S2LLK1   A0A212F954   A0A0L7LUU0   A0A1E1WQF0   A0A154PGH2   A0A1B6ELT3   A0A2A3ECC2   A0A0L7QKM9   A0A151IZV8   E0VV40   A0A158NW26   F4WLD0   A0A195FZY2   A0A310S4C8   A0A0C9RAJ8   F4WLC7   A0A151J000   A0A232FFJ2   K7J4N0   A0A195CRQ4   A0A2L1IQ92   A0A151X400   A0A2H8TVR3   A0A0A9ZF43   A0A158P081   A0A195BMX2   A0A195FXG5   A0A088AFH0   A0A067RT64   T1I1G5   A0A2J7QLV2   Q5CCT0   A0A1B6DG36   A0A0J7KLK6   A0A195BMY4   A0A2S2QSP0   A0A2S2PE69   A0A026W5P2   A0A034W4V5   A0A2P8XDI0   A0A0K8V2I4   A0A0L0C394   A0A1I8NET6   T1PGQ5   A0A151X3K3   W8B8R2   A0A0A1XQX8   A0A1Q3EW48   A0A1I8Q1Q2   A0A1Q3EW46   A0A1Q3EW45   A0A1Q3EW51   A0A2S2NFU7   E2C2C1   A0A182XLI6   A0A182I2Q2   Q7PT49   A0A182Q6B1   A0A182WJS4   W8ATM9   A0A182HE16   B4KT35   A0A182JKT2   A0A1S4FWE5   A0A084WER1   B4J8P6   B4LQ80   B5E1G4   B4NN66   Q16M52   A0A146MGX6   A0A336KB97   A0A3B0J584   B3MDW0   A0A1A9WHV6   A0A182LUY5   A0A1B0ARK3   B0WVY0   A0A1A9YJR7   A7URL5   A0A1A9V629   A0A1A9ZRE8   A0A1B0GA45   A0A2M3Z1U1   A0A0M5IYZ5   A0A2M3Z215   A0A182FEI6   A0A2M4B912   W5J5G2   A0A2M4A0R2   A0A2M4A0Y7   A0A2M4A183  

Pubmed

28756777    26354079    22118469    26227816    20566863    21347285    + More
21719571    28648823    20075255    29415259    25401762    24845553    16174032    24508170    25348373    29403074    26108605    25315136    24495485    25830018    20798317    12364791    26483478    17994087    24438588    15632085    17510324    26823975    20920257    23761445   

EMBL

NWSH01000198    PCG78486.1    KZ150115    PZC73280.1    PCG78487.1    KQ459600    + More
KPI94265.1    KQ459995    KPJ18567.1    JQ747493    AGG36450.2    RSAL01000067    RVE49332.1    AGBW02009647    OWR50260.1    JTDY01000044    KOB79205.1    GDQN01001815    JAT89239.1    KQ434892    KZC10564.1    GECZ01030878    JAS38891.1    KZ288287    PBC29385.1    KQ414940    KOC59169.1    KQ980673    KYN14612.1    DS235802    EEB17246.1    ADTU01027767    ADTU01027768    ADTU01027769    ADTU01027770    ADTU01027771    GL888207    EGI65093.1    KQ981169    KYN45359.1    KQ777939    OAD52022.1    GBYB01005300    JAG75067.1    EGI65090.1    KYN14614.1    NNAY01000279    OXU29531.1    AAZX01000457    AAZX01000467    AAZX01010907    AAZX01015076    AAZX01021857    KQ977349    KYN03386.1    MF741660    AVD96943.1    KQ982558    KYQ54999.1    GFXV01006588    MBW18393.1    GBHO01001048    JAG42556.1    ADTU01004553    KQ976433    KYM87338.1    KYN45360.1    KK852478    KDR23009.1    ACPB03005956    NEVH01013241    PNF29557.1    AB190295    BAD91050.1    GEDC01013397    GEDC01012654    JAS23901.1    JAS24644.1    LBMM01005694    KMQ91288.1    KYM87340.1    GGMS01011552    MBY80755.1    GGMR01014869    MBY27488.1    KK107390    EZA51390.1    GAKP01009218    JAC49734.1    PYGN01002724    PSN30050.1    GDHF01019296    JAI33018.1    JRES01000960    KNC26722.1    KA647884    AFP62513.1    KYQ54995.1    GAMC01016995    GAMC01016994    JAB89561.1    GBXI01016791    GBXI01000866    JAC97500.1    JAD13426.1    GFDL01015511    JAV19534.1    GFDL01015508    JAV19537.1    GFDL01015515    JAV19530.1    GFDL01015510    JAV19535.1    GGMR01003406    MBY16025.1    GL452124    EFN77871.1    APCN01000178    AAAB01008807    EAA04514.5    AXCN02000540    GAMC01016993    JAB89562.1    JXUM01035244    JXUM01035245    JXUM01035246    JXUM01035247    JXUM01035248    CH933808    EDW09555.1    ATLV01023245    KE525341    KFB48705.1    CH916367    EDW01313.1    CH940648    EDW61365.2    CM000071    EDY69505.2    CH964282    EDW85805.1    CH477880    EAT35404.1    GDHC01000154    JAQ18475.1    UFQS01000264    UFQT01000264    SSX02184.1    SSX22561.1    OUUW01000001    SPP74853.1    CH902619    EDV36495.1    AXCM01002771    JXJN01002469    DS232134    EDS35812.1    EDO64657.1    CCAG010022307    GGFM01001738    MBW22489.1    CP012524    ALC40498.1    GGFM01001805    MBW22556.1    GGFJ01000351    MBW49492.1    ADMH02002097    ETN59226.1    GGFK01001076    MBW34397.1    GGFK01001084    MBW34405.1    GGFK01001077    MBW34398.1   

Proteomes

UP000218220    UP000053268    UP000053240    UP000283053    UP000007151    UP000037510    + More
UP000076502    UP000242457    UP000053825    UP000078492    UP000009046    UP000005205    UP000007755    UP000078541    UP000215335    UP000002358    UP000078542    UP000075809    UP000078540    UP000005203    UP000027135    UP000015103    UP000235965    UP000036403    UP000053097    UP000245037    UP000037069    UP000095301    UP000095300    UP000008237    UP000076407    UP000075840    UP000007062    UP000075886    UP000075920    UP000069940    UP000009192    UP000075880    UP000030765    UP000001070    UP000008792    UP000001819    UP000007798    UP000008820    UP000268350    UP000007801    UP000091820    UP000075883    UP000092460    UP000002320    UP000092443    UP000078200    UP000092445    UP000092444    UP000092553    UP000069272    UP000000673   

Pfam

PF02210   Laminin_G_2        + More
PF01049   Cadherin_C
PF00028   Cadherin
PF06377   Adipokin_hormo

Interpro

IPR000233   Cadherin_cytoplasmic-dom        + More
IPR001791   Laminin_G       
IPR002126   Cadherin-like_dom       
IPR013032   EGF-like_CS       
IPR027397   Catenin_binding_dom_sf       
IPR020894   Cadherin_CS       
IPR013320   ConA-like_dom_sf       
IPR015919   Cadherin-like_sf       
IPR000742   EGF-like_dom       
IPR002047   Adipokinetic_hormone_CS       
IPR010475   AKH/RPCH_hormone       

SUPFAM

SSF49899   SSF49899        + More
SSF49313   SSF49313       

Gene 3D

4.10.900.10    

ProteinModelPortal

A0A2A4K391   A0A2W1BKM6   A0A2A4K2M1   A0A194PT07   A0A194RM18   M4M3L2   + More
A0A3S2LLK1   A0A212F954   A0A0L7LUU0   A0A1E1WQF0   A0A154PGH2   A0A1B6ELT3   A0A2A3ECC2   A0A0L7QKM9   A0A151IZV8   E0VV40   A0A158NW26   F4WLD0   A0A195FZY2   A0A310S4C8   A0A0C9RAJ8   F4WLC7   A0A151J000   A0A232FFJ2   K7J4N0   A0A195CRQ4   A0A2L1IQ92   A0A151X400   A0A2H8TVR3   A0A0A9ZF43   A0A158P081   A0A195BMX2   A0A195FXG5   A0A088AFH0   A0A067RT64   T1I1G5   A0A2J7QLV2   Q5CCT0   A0A1B6DG36   A0A0J7KLK6   A0A195BMY4   A0A2S2QSP0   A0A2S2PE69   A0A026W5P2   A0A034W4V5   A0A2P8XDI0   A0A0K8V2I4   A0A0L0C394   A0A1I8NET6   T1PGQ5   A0A151X3K3   W8B8R2   A0A0A1XQX8   A0A1Q3EW48   A0A1I8Q1Q2   A0A1Q3EW46   A0A1Q3EW45   A0A1Q3EW51   A0A2S2NFU7   E2C2C1   A0A182XLI6   A0A182I2Q2   Q7PT49   A0A182Q6B1   A0A182WJS4   W8ATM9   A0A182HE16   B4KT35   A0A182JKT2   A0A1S4FWE5   A0A084WER1   B4J8P6   B4LQ80   B5E1G4   B4NN66   Q16M52   A0A146MGX6   A0A336KB97   A0A3B0J584   B3MDW0   A0A1A9WHV6   A0A182LUY5   A0A1B0ARK3   B0WVY0   A0A1A9YJR7   A7URL5   A0A1A9V629   A0A1A9ZRE8   A0A1B0GA45   A0A2M3Z1U1   A0A0M5IYZ5   A0A2M3Z215   A0A182FEI6   A0A2M4B912   W5J5G2   A0A2M4A0R2   A0A2M4A0Y7   A0A2M4A183  

PDB

5SZN     E-value=7.80701e-29,     Score=322

KEGG

100127100    no KO assigned | (RefSeq) 1cad, Bm1cad; 1-cadherin

GO

GO:0005886   GO:0007156   GO:0005509   GO:0016021   GO:0007155   GO:0004022   GO:0005179   GO:0005576   GO:0098609   GO:0017022   GO:0005913   GO:0005938   GO:0016339   GO:0007298   GO:0016318   GO:0030031   GO:0030175   GO:0005914   GO:0035147   GO:0016342   GO:0071907   GO:0035160   GO:0090254   GO:0035019   GO:0044331   GO:0007435   GO:0035099   GO:1903688   GO:0008356   GO:0008354   GO:0008013   GO:0007420   GO:0036099   GO:0001748   GO:0098730   GO:0042060   GO:0042803   GO:0003151   GO:0007370   GO:0035212   GO:0007409   GO:0045186   GO:0007379   GO:0055037   GO:0045176   GO:0050832   GO:0008258   GO:0035262   GO:0043296   GO:0007506   GO:0016020   GO:0006811   GO:0006032   GO:0004672   GO:0048384  

Subcellular location

Cell membrane  
Secreted  

Length:

1442

Number of predicted TMHs:

1

Exp number of AAs in TMHs:

22.73202

Exp number, first 60 AAs:

0

Total prob of N-in:

0.00001

outside

1  -  1268

TMhelix

1269  -  1291

inside

1292  -  1442

 

 

Pi

290.237255

Theta

184.258889

Tajima's D

1.810598

CLR

0.197633

CSRT

0.849157542122894

Interpretation

Uncertain