SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04013
Pre Gene Modal
BGIBMGA010114
Annotation
PREDICTED:_uncharacterized_protein_LOC101736683_isoform_X2_[Bombyx_mori]
Location in the cell
Cytoplasmic   Reliability : 2.788
 

Sequence

CDS
ATGTATTTAACGTTGAAACAAAAGCTGTTAGAAGTTCCCGAAGGCACGGCGCAGCAGATACAAATGTTGTACGGCTACGATGAAAGAAAAATGAATGAGGCCGTCGATATTCTGGAGGAATGGCTGAAGAAACAGAATCATTTCCTGAAGAAAGATTTTCCTAGAATATACTTGGAGACGAATATAATAGGAAGCAAAGGATCTATCGAGAGAACTAAATCAAAACTGGACAAGTTGTTCGCTCTCCGGACTGTTCTACGGAAGTTTTATGAATTCAATGATATCAGAAATGAGTTTAAAAACCTGTTCTCGTGTTCATACATATTAGCTATGCCTAAATTGACCAAAGAAAACAATAGACTTTTTGTACTTAAAGTGATTGGAAACGAATTCTTTGATAAAGTTCCATATTTAGATTATTACAAAATTATGATTGCGTATGTAGAATACTTCAGGATGTATGATTACTCGGACGGATACAGAGTAGTTATTGACTACAGGGATATCAACATTATGAATATAATAGCTCGCCTCAACCTGGTAGAGGTCATTTTGCTGGATATTGCCCGGAAAATGCAATTCGACGTGGAACGTTTTCAGCATCAGGATCAGGAGCTTCTTTCTCATCAAGAGATTCGCCTGTACCATCCATTAAGGAGTGTTCCTACTGTAAAGGGACTCGACACACTACAGAAAGATGTTTTAAAAGAATTGCTGACGAACAACACAGTAAAAGAAGACGAAGTTTTGTACCAAAAAGTTAAGCTGGAGAATGGAAGAACCAAGACTCTAAAAGCGGTACCACAATGCTACCAATGGAGTATCATAAATAATTACCACAAAGTTTTAAAACACTTTGGCTGGGAGAAAGCACTCGAAAAACTCAAAGAACACTTTTGGTCTGACAAATTGAGCTCAAAAGTTCGCAGCTTCATAGACAATTGCGTGTCCGGCTACGGTGCGAGGCTCAAAGGAATCCATATAATAAGTACATCGAAAGCAGTCGAGAATTTGCTGAGAATAATAACACCGTTATTCAATCCAAAATTGGTGGCCAGATTCAGAGTTCACGGAACGTTGGAGTCATTACACGAAGTAATATCTCAGGATATGTTACCAAAAGAGCTGGGAGGGACTGGACGATCGCTTAAAGAGATACAAGATGACTGGATCGACCTATTGAGCTCGAAGGAGACCTCAGAATTCTTCCGCGAGATAAACAAAGCACAGGTCAACGAGGCGTATAGAATGGATGATTTGAAGAATGAAGAAATGGGATTGCCGGGAACTTTCAGAACATTAAGTGTTGATTAA
Protein
MYLTLKQKLLEVPEGTAQQIQMLYGYDERKMNEAVDILEEWLKKQNHFLKKDFPRIYLETNIIGSKGSIERTKSKLDKLFALRTVLRKFYEFNDIRNEFKNLFSCSYILAMPKLTKENNRLFVLKVIGNEFFDKVPYLDYYKIMIAYVEYFRMYDYSDGYRVVIDYRDINIMNIIARLNLVEVILLDIARKMQFDVERFQHQDQELLSHQEIRLYHPLRSVPTVKGLDTLQKDVLKELLTNNTVKEDEVLYQKVKLENGRTKTLKAVPQCYQWSIINNYHKVLKHFGWEKALEKLKEHFWSDKLSSKVRSFIDNCVSGYGARLKGIHIISTSKAVENLLRIITPLFNPKLVARFRVHGTLESLHEVISQDMLPKELGGTGRSLKEIQDDWIDLLSSKETSEFFREINKAQVNEAYRMDDLKNEEMGLPGTFRTLSVD

Summary

Pfam
PF00650   CRAL_TRIO
Interpro
IPR036865   CRAL-TRIO_dom_sf        + More
IPR036273   CRAL/TRIO_N_dom_sf       
IPR001251   CRAL-TRIO_dom       
SUPFAM
SSF52087   SSF52087        + More
SSF46938   SSF46938       
Gene 3D
ProteinModelPortal
PDB
3HY5     E-value=0.000403971,     Score=104

Ontologies

Topology

Length:
437
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.02564
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00422
outside
1  -  437
 
 

Population Genetic Test Statistics

Pi
284.271121
Theta
180.997727
Tajima's D
1.86977
CLR
0.222022
CSRT
0.851707414629269
Interpretation
Uncertain

Multiple alignment of Orthologues

 
 

Gene Tree

 
 
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