SGID Silkworm Genome Informatics Database
Gene
KWMTBOMO04009  Validated by peptides from experiments
Pre Gene Modal
BGIBMGA010263
Annotation
PREDICTED:_putative_transcription_factor_capicua_[Bombyx_mori]
Location
Bomo_Chr7(+):8187301-8213739      View in EpiBrowser
Transcription factor
HMG
Location in the cell
Nuclear   Reliability : 4.08
 

Sequence

CDS
ATGCCTTATCAACTTAGATCTCAAGCGGCAACCCCGCACAAATATAAGAAGGGCGATGTCGTATCAACTCCGACCGGTATAAGGAAGAAGTTCAACGGCAAACAGTGGAGGCGGCTGTGTTCGAAGGACGGCTGCACTAAGGAGAGCCAGCGGCGGGGCTTCTGCTCGCGCCACCTGTCGCTGCGGGGCGTCGCGCGCTCCTCCAACACGCCGCTCGCGCAGGGCTCGGCGCACACGCCGCAGCAGAGGAGTAGCAGTAAATCTTTGTCGTCTAGCGGCACGGGCGTCGAGGGAGACGAAACGTCCCGGGAGAGCGACACCACGCCCCCTCACTACAGAGTCACGGGGAGGTTCGACCCCGACGAGACCGAGGCCGCCAACATGCTGGTGTCGCTGGGCAGCTCTCGGTCGGGCAGCCCGGGCGCGTCCCCGGTGGGCGGGGGCGGGTCCCCGGGGCTCCGCAACAACCTGTTCGTGCCCATCTCCTCGCCGCAGCCCCCGCACTCCGCCCCACACACCGCGCTCTACCACCACCATCTCATCAGGCCTGAAGTGAGACCGGGAAGAGTCAGTTCGCCTATCGGAGGAGTGGCCACCAGCGTTATAAGAGTCTCACCCGCCCCGAGCTATCACTATCCGGTTGAAAACCGGAACGGAACATCAGTATTAAACGCTCCTTCGTCGCAGTCAAACGTCGTTGGTGCTCAAAGTGCGGGCCACACCGCCCAGAGCTTGATACAGACGAGTGTGACGGCGCCCTCCGGCGTGTCGCTCAACCTTAACGCCGCGAGCCAAGCCGGCGCCGCCCCCACCGCGCGCCCCGCCGACTTCGCACAGAACCTGGTCGTGCACAGAGCCGTGCCCTCCGCCAACGGCCTCGACCTGGACCATAACATGTACCGCCAGTCGCTGCTGAGGAACGGCATCCACGAGTCGTATCGCCGCGAGACTGATGTGTCGCCGCCCTTGAGCCACGAGAACTTTGGGAAACGGAGGGCCTCCGAGTACGAGGACGACGACCACTCCGTGCCGCAGCGAGACCACAACGTGCTCCGTAGCGTGATGGACAGGCCTCCGGAACTATCAGAGGCTCGAGTGACCGTGGAGGAAAAGAGAATATTGAAGCCTTCGCCACTGCCGGCCAGGTTGCTTCCCGTCGTGCACCCGGAGGTCAAGCAAGAACCGATCAAAACTGTCTATGTGATACCGCAGAATATTATGGACAAAAAGTATTTTTTAATCAAAAACGAACCGCCTGAAACCGTCCATATAGAACAAAAGTTGAATCACATGACTCAGCAATTAAACAAGAACGATTCAGAGACCGAACACAGAAGTTTGGATAATGGTGACCACGTAAACAGTATAAACGTGAACAGCAGTGCCGTGATAGTACATCCGAATCAGTTGTTGCCCGTTCTACCGCCGCCCACGTCACATACGGCCATTATCGTATCGAGCGGAGTATCGTGCGGTGCATTCCCGTGGCAGTCCCTGGTGCCGCTACTGAGCGCCCCCAGCCCCGGGCCCGCCTCCGCGCCGCCCTCCCCGCGCACCCCGCACACCCCTCACACTCCGCACACGCCGCACACACCGCACACTCCTCACACCCCGCACACGCCCGCGCACATCAAGTCTGAAGACCAGATCAAGACTGAGACTAATGACACGGTGACGTCGATGTGTACAGACGAAGATGACGAAGTGTTCGAATGCGACGAGCCGGCTTCGGGCGAGGATTCCAACAAGCGACGCTCTCAAAGCTTATCGGCTTTGAATTCGCCCGCAAGCACCTCTGAAAAGAAAGAGCGCCGCATAAGACGTCCGATGAACGCGTTCATGATATTCTCGAAGCGACATCGGCAAGTCGTCCACCAGATGCATCCGAACCAGGACAACCGCACCGTCAGCAAGATACTCGGCGAGTGGTGGTACTCCCTCAAGCCTGAAGAGAAACAGAAGTACAATGAATTGGCCACCGAGGTGAAAGAAGCTCACTTCAAAGCACATCCGGAATGGAAATGGTGTAACAAAGATCGTAGGAAATCTTCGAGTAGCAAAGATCCCACTGGGTCTATACCGCAGAGTCCTCGTACTCCTTCAGAAGTACCGAGCAGCGCTCTCCCGAGCTCAGTGGACGTTCCAGTTAATATCTCCGCCTACAACCACGTCGGCTCGCCGCAGCTGAGCGACGACGAACCCATGATAACTCAAATGTGTACCGAAACTCCCGCCTCGTCTCAAAACCTTGAGATAGATCTCAAATGCGGTGAGAAGGTCACGGATTCTGATTCCGAGGGTATCGATACGAGGGATTACCTACCTTCGCATCACGATCACACGAGAAGACCTAAACCCATTAAAGCTAGAGCCGGGTCATCCGACAATTTATTGGGCGGCATCACGGCTTCCAGTCCCGGCGGATCTAAAGTGTTCCAACCCACCGGTGGAGCCTTCAAGTCTACACATGCGGATCCGGGCGACGGTCACCGCCAGTGGACTGCGTTCAGCACAGTGAACAAAACGGCTATGCCCAACCAAGTACCTAGCTCTCCTCACGTACCGCAGCCGCCACAGAGCCAGCCAACCGCTAACAGCACGCAGAGCCTCGCCACCAGCGTTCAAGGGATAACACTAAACACGCCCAATCTATCGACGCAAGCCGCTCTCGATAACGCCATAGCGTCGATAATGAACTCCCCCACGGCCACTAGTGGTGTGCAAGTGATATCGAGCGGCATATCGATGCCGAATCAATCGACTCAACAAACTTCGACAACATCAGCTCTGAGTAACGCTCTATTGAGGAGTGTCACATTTGTAAAGAAGACGATCGCTGATAATCCTCTGTGTCCGCTAACGTTGTCGGTGGACGCATCGGGCAACTTGCTGCTGAAGCCGAGCGAGGCCAGCGACGGCGCGCACACCGAGATGCATCAACAGCCTCTGCACTACGTTCACTTGCAGAGACTGTATCTACCGCACTTCAACACGGTAGATACAAGCAGCCCCGCAACTCAGACAAATCAACAGCAACAACAGCAACAGCAGCATCAACAGCAACATCAACAACAGCATCAGCAACAGCACCAGCAGCAACAGCATCAACAACATCAACAACAACAGCAACATATTCAACAACAACAGCAACATATTCAACAACAACAGTATCAGCAACAACAACAACAACATCAGCAGCAACAACAACACCAACAACAGACGCAACTGCAGCATCAATTGAACATGCAAAATGGTCCAACCGTGATCGTCTCTCAGAGCAACAGTCATCCCTTACCCAAACCCATATCTGAGTGGGGGGAAGTGGAGGAAACCCGCCCTTTCCCGCTGGCGCCCACGCCTGCGCAGCTTGGACGGGCGCCTTTGCAAAAGAGACTCAGTCGGGGCACCTCGACGAGCTCATCGAACTCCAACGAGCAGACTGCTCCGCCCCCGGACAGCAGCAACGCGTCGCATCAACTGAATCAGAACATGAACGAGCCCTCGCCCTCGCCGCAGCCGCCCCCCTCCGCCGACAACCTGCCCAGTCCCTCGCACAAGAAGAGCCTCTTCAAGAAAGGCAACGAAGATGGACGTGACAAAGTGCTGGAAACGGTGAATTTCGAGCAGAAATTCAGCACCCTGCCGCAATTCAAGCCGGAGGCGTGCAGCCCTAGCGCGATGGTCGTGCCGCGGAGTCCGCAGCTCTATCTCAGGAAGAAAAAGCTTGGTATAGACGACGAAGGCAATACGATCGTGACGCCTCAAATAGAATCGGAAGTGCTGAACGGGAACGGCATCCCGACCCCGCACACCTCCACCAACAAGCTGGTCGGGAACACGTTTTTCGGACCGGACTTCAATCTAGAGACGTTTCGAGTGTCGGAGAGCGCGGAGGAGATGTCGCCGCGCACGCCGGTGTCGGGCCCGCGCGGCGAGGCCGGCCACCGCAAGGTGTTGGAGCAGCGCCGCCACCTCGTGCTCAAGCTGTTCAAGGACCACGGCATGTTCCCGACGACACAGGCAACGACCAATTTCCAGGCAACTCACATGGACATATTCCCAACAAAAACATCCCTGCAATTGAAGATACGCGAAGTTCGACAAAAGCTGATGGCGCAGTCGAACAACTTGACACCGCATTCGGAGGTCAACACACCGACGAATGTGAATTCGCCACTCGTGTCGGCTCCATTGCATTCCACGTCGACGGCCAGTTAG
Protein
MPYQLRSQAATPHKYKKGDVVSTPTGIRKKFNGKQWRRLCSKDGCTKESQRRGFCSRHLSLRGVARSSNTPLAQGSAHTPQQRSSSKSLSSSGTGVEGDETSRESDTTPPHYRVTGRFDPDETEAANMLVSLGSSRSGSPGASPVGGGGSPGLRNNLFVPISSPQPPHSAPHTALYHHHLIRPEVRPGRVSSPIGGVATSVIRVSPAPSYHYPVENRNGTSVLNAPSSQSNVVGAQSAGHTAQSLIQTSVTAPSGVSLNLNAASQAGAAPTARPADFAQNLVVHRAVPSANGLDLDHNMYRQSLLRNGIHESYRRETDVSPPLSHENFGKRRASEYEDDDHSVPQRDHNVLRSVMDRPPELSEARVTVEEKRILKPSPLPARLLPVVHPEVKQEPIKTVYVIPQNIMDKKYFLIKNEPPETVHIEQKLNHMTQQLNKNDSETEHRSLDNGDHVNSINVNSSAVIVHPNQLLPVLPPPTSHTAIIVSSGVSCGAFPWQSLVPLLSAPSPGPASAPPSPRTPHTPHTPHTPHTPHTPHTPHTPAHIKSEDQIKTETNDTVTSMCTDEDDEVFECDEPASGEDSNKRRSQSLSALNSPASTSEKKERRIRRPMNAFMIFSKRHRQVVHQMHPNQDNRTVSKILGEWWYSLKPEEKQKYNELATEVKEAHFKAHPEWKWCNKDRRKSSSSKDPTGSIPQSPRTPSEVPSSALPSSVDVPVNISAYNHVGSPQLSDDEPMITQMCTETPASSQNLEIDLKCGEKVTDSDSEGIDTRDYLPSHHDHTRRPKPIKARAGSSDNLLGGITASSPGGSKVFQPTGGAFKSTHADPGDGHRQWTAFSTVNKTAMPNQVPSSPHVPQPPQSQPTANSTQSLATSVQGITLNTPNLSTQAALDNAIASIMNSPTATSGVQVISSGISMPNQSTQQTSTTSALSNALLRSVTFVKKTIADNPLCPLTLSVDASGNLLLKPSEASDGAHTEMHQQPLHYVHLQRLYLPHFNTVDTSSPATQTNQQQQQQQQHQQQHQQQHQQQHQQQQHQQHQQQQQHIQQQQQHIQQQQYQQQQQQHQQQQQHQQQTQLQHQLNMQNGPTVIVSQSNSHPLPKPISEWGEVEETRPFPLAPTPAQLGRAPLQKRLSRGTSTSSSNSNEQTAPPPDSSNASHQLNQNMNEPSPSPQPPPSADNLPSPSHKKSLFKKGNEDGRDKVLETVNFEQKFSTLPQFKPEACSPSAMVVPRSPQLYLRKKKLGIDDEGNTIVTPQIESEVLNGNGIPTPHTSTNKLVGNTFFGPDFNLETFRVSESAEEMSPRTPVSGPRGEAGHRKVLEQRRHLVLKLFKDHGMFPTTQATTNFQATHMDIFPTKTSLQLKIREVRQKLMAQSNNLTPHSEVNTPTNVNSPLVSAPLHSTSTAS

Summary

Uniprot
A0A194PLE9   A0A2H1VJH6  
Pubmed
26354079   
EMBL
KQ459600    KPI94261.1    ODYU01002639    SOQ40404.1   
Proteomes
UP000053268   
Pfam
PF16090   DUF4819        + More
PF00505   HMG_box
Interpro
IPR036910   HMG_box_dom_sf        + More
IPR009071   HMG_box_dom       
IPR032147   DUF4819       
SUPFAM
SSF47095   SSF47095       
Gene 3D
1.10.30.10    
ProteinModelPortal
A0A194PLE9   A0A2H1VJH6  
PDB
1WZ6     E-value=2.02127e-16,     Score=215

Ontologies

KEGG
101744813    K20225 capicua transcriptional repressor | (RefSeq) putative transcription factor capicua
PATHWAY
04013    MAPK signaling pathway - fly - Bombyx mori (domestic silkworm)
GO
GO:0003677   GO:0005634  

Topology

Length:
1405
Number of predicted TMHs:
0
Exp number of AAs in TMHs:
0.00019
Exp number, first 60 AAs:
0
Total prob of N-in:
0.00002
outside
1  -  1405
 
 

Population Genetic Test Statistics

Pi
233.661048
Theta
166.370525
Tajima's D
1.238918
CLR
0.315141
CSRT
0.725213739313034
Interpretation
Uncertain
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